| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317075
Identifier: 74317075
GI number: 74317075
Start: 1120039
End: 1120554
Strand: Reverse
Name: 74317075
Synonym: Tbd_1057
Alternate gene names: NA
Gene position: 1120554-1120039 (Counterclockwise)
Preceding gene: 74317076
Following gene: 74317073
Centisome position: 38.51
GC content: 68.99
Gene sequence:
>516_bases GTGACGCACGCACAGAGCTTCCCGCCGATCGCCGATACGCACGCGCGCGTCCTGATCCTCGGCAGCCTGCCCGGGCAGAC GTCGCTCAGGATGCAGCAGTACTACGCGCAGCCGCAGAATGCGTTCTGGAAGATCATGGGACGCCTCTTCGGTGCCGGCG CGGACGTGCCCTACGCCGAACGCTACCGCAAGCTCGTCAGGAGTGGGGTCGCGCTCTGGGACGTGTGCGCCTCCGCCGAG CGGCCGGGCAGCCTCGATTCGGCGATCGTGACATCGAGCGTGGTGCCGAACGACTTCGCCGCGTTCCTCGCCTCGCACCC GCATATCCATCTCGTCTGCTTCAACGGGGCGAAGGCGGCGGGCCTCTATCGCCGCCTCGTGCTGCCGGATCTGCCCGAGG CGCCGCGGCTCGTCGCCTACCGGACACTGCCGTCGACGAGCCCGGCGCACGCGGGCATGCGCTTCGAGGAAAAACTCGCG CACTGGTCGGTCGTCAAGGAGGCGGCCGGTCACTGA
Upstream 100 bases:
>100_bases CGATAATGACGGCGCGGCGGGATGACACGAGCGCCGCCGACCCGAGCCTTTCCATGCCGCCCGCCTCGCCCTCCCCCAGC TTCGTCGCCCCACCGCGATC
Downstream 100 bases:
>100_bases AAAATGCCGGCGGTTCGCACAGTCCCGCCATTTTTCTGCCGCATTATGTCAACGGCGATTGACGCTGATCCGGCCCGGCC CCATCAGGAGCAACGCGATC
Product: hypothetical protein
Products: NA
Alternate protein names: Uracil-DNA Glycosylase Superfamily Protein; Uracil-DNA Glycosylase Superfamily; Mug GT/U Mismatch-Specific DNA Glycosylase; T/U Mismatch-Specific DNA Glycosylase; G/U Mismatch-Specific DNA Glycosylase; GT/U Mismatch-Specific DNA Glycosylase-Like Protein; DNA Glycosylase; G/U Mismatch-Specific Uracil-DNA Glycosylase; Uracil DNA Glycosylase Superfamily; G-T/U Mismatch-Specific DNA Glycosylase-Like; YjeF-Like Protein; GT/U Mismatch-Specific Uracil/Thymine DNA-Glycosylase
Number of amino acids: Translated: 171; Mature: 170
Protein sequence:
>171_residues MTHAQSFPPIADTHARVLILGSLPGQTSLRMQQYYAQPQNAFWKIMGRLFGAGADVPYAERYRKLVRSGVALWDVCASAE RPGSLDSAIVTSSVVPNDFAAFLASHPHIHLVCFNGAKAAGLYRRLVLPDLPEAPRLVAYRTLPSTSPAHAGMRFEEKLA HWSVVKEAAGH
Sequences:
>Translated_171_residues MTHAQSFPPIADTHARVLILGSLPGQTSLRMQQYYAQPQNAFWKIMGRLFGAGADVPYAERYRKLVRSGVALWDVCASAE RPGSLDSAIVTSSVVPNDFAAFLASHPHIHLVCFNGAKAAGLYRRLVLPDLPEAPRLVAYRTLPSTSPAHAGMRFEEKLA HWSVVKEAAGH >Mature_170_residues THAQSFPPIADTHARVLILGSLPGQTSLRMQQYYAQPQNAFWKIMGRLFGAGADVPYAERYRKLVRSGVALWDVCASAER PGSLDSAIVTSSVVPNDFAAFLASHPHIHLVCFNGAKAAGLYRRLVLPDLPEAPRLVAYRTLPSTSPAHAGMRFEEKLAH WSVVKEAAGH
Specific function: Unknown
COG id: COG3663
COG function: function code L; G:T/U mismatch-specific DNA glycosylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18690; Mature: 18558
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHAQSFPPIADTHARVLILGSLPGQTSLRMQQYYAQPQNAFWKIMGRLFGAGADVPYAE CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHH RYRKLVRSGVALWDVCASAERPGSLDSAIVTSSVVPNDFAAFLASHPHIHLVCFNGAKAA HHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCHH GLYRRLVLPDLPEAPRLVAYRTLPSTSPAHAGMRFEEKLAHWSVVKEAAGH HHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure THAQSFPPIADTHARVLILGSLPGQTSLRMQQYYAQPQNAFWKIMGRLFGAGADVPYAE CCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHH RYRKLVRSGVALWDVCASAERPGSLDSAIVTSSVVPNDFAAFLASHPHIHLVCFNGAKAA HHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCHH GLYRRLVLPDLPEAPRLVAYRTLPSTSPAHAGMRFEEKLAHWSVVKEAAGH HHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA