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The map label for this gene is intB [H]

Identifier: 74316961

GI number: 74316961

Start: 1003571

End: 1004773

Strand: Reverse

Name: intB [H]

Synonym: Tbd_0943

Alternate gene names: 74316961

Gene position: 1004773-1003571 (Counterclockwise)

Preceding gene: 74316962

Following gene: 74316949

Centisome position: 34.53

GC content: 57.44

Gene sequence:

>1203_bases
GTGCTTACCGACATGAAAGTGCGCCAGGCGAAACCTGGTCCCAACGTCCAGAAACTCTCCGATTCTCAGGGCCTGTTTCT
TCATATATCCCCGTCGGGTGGAAAGTGGTGGCGCCTAGCTTATCGTTACACGGGAAAGCAGAAGCTGCTGTCGCTTGGAA
CCTACCCGGCGGTCTCTCTTGCAGACGCCCGGCAGCGGCGTGATGAAGCCAAAAAGCTGCTCGCCCACGGCGTAGACCCG
GCCGAAAATAGAAAGGCTACAAAGCAGGCTCGGCAGGACCGCGCGAGCAACAGTTTTGAAGCCGTCGCTCGCGAATGGCA
TGCGAAGTTTTCTTCGACATGGAGCGCAAACCATAGCGACCGCATCATCAGGCGCTTGGAAAATGACATTTTTCCGTGGT
TAGGCGATAAGCCGATCGCCGACATTACACCCCCAACCCTTCTCGCAGCCCTACGGCGTATCGAGGAGCGCGGAGCGGTC
GAAACCGCCCATCGCGCCATGCAGAACTGCGGCCAAGTTTTTCGCTACTCAGTAGCGACCGGCCGCGCGGAACGAGACCC
TTCGCAAGACCTGAAAGGCGCCCTCCCGCCTGTTGCCAAGAGCCACTTCAAAAGCATCACCGACCCCGTCCAAATTGGAG
TGCTGCTGCGCAATATAGATGGCTACAGCGGTGGCCCCGTCGTGCGAAGCGCACTTCGTTTGGCACCCTTAATTTTTGTT
CGTCCAGGCGAATTAAGACATGCCGAATGGGCACACTTCGACCTCGGGGCTGCCGAATGGCGCTATACGGTATCCAAGAC
CAATACCGAGCACATAGTCCCTTTGAGCCGTCAAGCCATTTCGGTCTTGGAAGAACTGCAGCCCTTAACAGGGCACAAGC
GCTATGTTTTTCCGGCGAACCGGGGGGAAGGCCGCCCCATGAGCGAGAACACTGTCAACGCTGCGCTGAGGTCGCTTGGC
TACGATAAGGAAACACTAACAGGGCACGGCTTCCGCGCCATGGCGCGGACCCTTCTTGATGAGGTTCTAGGGTTCCGCCC
AGACATCATCGAGCATCAGTTAGCGCACGCCGTCCGCGATCCGCTAGGGCGAGCCTATAACCGCACCACCCACCTTCCGG
AGCGCCGAAAAATGATGCAGGGCTGGGCAGACTACTTAGATGAACTAAAAGCTGGAGCAACGGTTATTCGGCTTTATGGA
TAA

Upstream 100 bases:

>100_bases
TAAAGAAACGTAAAGCAACATAACGCGGGATTGTTGGTAACACCGTTGGTAACTGCTAGACTCGTCCGGGCTGTTACCAA
CAACCCTGGGGTCGATTCCC

Downstream 100 bases:

>100_bases
ATCAGCCTAAGGCCTGAACTGCGCGAGCCGCCCATCACTCTGCCCACCGGTCTCACGCTAACCATATGGTCACTGGCGTC
GCACGTTCGAATATCCCGCC

Product: putative integrase prophage protein

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MLTDMKVRQAKPGPNVQKLSDSQGLFLHISPSGGKWWRLAYRYTGKQKLLSLGTYPAVSLADARQRRDEAKKLLAHGVDP
AENRKATKQARQDRASNSFEAVAREWHAKFSSTWSANHSDRIIRRLENDIFPWLGDKPIADITPPTLLAALRRIEERGAV
ETAHRAMQNCGQVFRYSVATGRAERDPSQDLKGALPPVAKSHFKSITDPVQIGVLLRNIDGYSGGPVVRSALRLAPLIFV
RPGELRHAEWAHFDLGAAEWRYTVSKTNTEHIVPLSRQAISVLEELQPLTGHKRYVFPANRGEGRPMSENTVNAALRSLG
YDKETLTGHGFRAMARTLLDEVLGFRPDIIEHQLAHAVRDPLGRAYNRTTHLPERRKMMQGWADYLDELKAGATVIRLYG

Sequences:

>Translated_400_residues
MLTDMKVRQAKPGPNVQKLSDSQGLFLHISPSGGKWWRLAYRYTGKQKLLSLGTYPAVSLADARQRRDEAKKLLAHGVDP
AENRKATKQARQDRASNSFEAVAREWHAKFSSTWSANHSDRIIRRLENDIFPWLGDKPIADITPPTLLAALRRIEERGAV
ETAHRAMQNCGQVFRYSVATGRAERDPSQDLKGALPPVAKSHFKSITDPVQIGVLLRNIDGYSGGPVVRSALRLAPLIFV
RPGELRHAEWAHFDLGAAEWRYTVSKTNTEHIVPLSRQAISVLEELQPLTGHKRYVFPANRGEGRPMSENTVNAALRSLG
YDKETLTGHGFRAMARTLLDEVLGFRPDIIEHQLAHAVRDPLGRAYNRTTHLPERRKMMQGWADYLDELKAGATVIRLYG
>Mature_400_residues
MLTDMKVRQAKPGPNVQKLSDSQGLFLHISPSGGKWWRLAYRYTGKQKLLSLGTYPAVSLADARQRRDEAKKLLAHGVDP
AENRKATKQARQDRASNSFEAVAREWHAKFSSTWSANHSDRIIRRLENDIFPWLGDKPIADITPPTLLAALRRIEERGAV
ETAHRAMQNCGQVFRYSVATGRAERDPSQDLKGALPPVAKSHFKSITDPVQIGVLLRNIDGYSGGPVVRSALRLAPLIFV
RPGELRHAEWAHFDLGAAEWRYTVSKTNTEHIVPLSRQAISVLEELQPLTGHKRYVFPANRGEGRPMSENTVNAALRSLG
YDKETLTGHGFRAMARTLLDEVLGFRPDIIEHQLAHAVRDPLGRAYNRTTHLPERRKMMQGWADYLDELKAGATVIRLYG

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=409, Percent_Identity=38.1418092909535, Blast_Score=255, Evalue=4e-69,
Organism=Escherichia coli, GI1788690, Length=391, Percent_Identity=34.7826086956522, Blast_Score=235, Evalue=3e-63,
Organism=Escherichia coli, GI145693166, Length=396, Percent_Identity=34.5959595959596, Blast_Score=214, Evalue=6e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44925; Mature: 44925

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTDMKVRQAKPGPNVQKLSDSQGLFLHISPSGGKWWRLAYRYTGKQKLLSLGTYPAVSL
CCCCCCHHCCCCCCCHHHCCCCCCEEEEEECCCCCEEEEEEEECCHHHHHHHCCCCCHHH
ADARQRRDEAKKLLAHGVDPAENRKATKQARQDRASNSFEAVAREWHAKFSSTWSANHSD
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHH
RIIRRLENDIFPWLGDKPIADITPPTLLAALRRIEERGAVETAHRAMQNCGQVFRYSVAT
HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
GRAERDPSQDLKGALPPVAKSHFKSITDPVQIGVLLRNIDGYSGGPVVRSALRLAPLIFV
CCCCCCCCHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCEEEE
RPGELRHAEWAHFDLGAAEWRYTVSKTNTEHIVPLSRQAISVLEELQPLTGHKRYVFPAN
CCCCCCCCCCCCCCCCCHHEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCC
RGEGRPMSENTVNAALRSLGYDKETLTGHGFRAMARTLLDEVLGFRPDIIEHQLAHAVRD
CCCCCCCCHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
PLGRAYNRTTHLPERRKMMQGWADYLDELKAGATVIRLYG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEC
>Mature Secondary Structure
MLTDMKVRQAKPGPNVQKLSDSQGLFLHISPSGGKWWRLAYRYTGKQKLLSLGTYPAVSL
CCCCCCHHCCCCCCCHHHCCCCCCEEEEEECCCCCEEEEEEEECCHHHHHHHCCCCCHHH
ADARQRRDEAKKLLAHGVDPAENRKATKQARQDRASNSFEAVAREWHAKFSSTWSANHSD
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHH
RIIRRLENDIFPWLGDKPIADITPPTLLAALRRIEERGAVETAHRAMQNCGQVFRYSVAT
HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
GRAERDPSQDLKGALPPVAKSHFKSITDPVQIGVLLRNIDGYSGGPVVRSALRLAPLIFV
CCCCCCCCHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCEEEE
RPGELRHAEWAHFDLGAAEWRYTVSKTNTEHIVPLSRQAISVLEELQPLTGHKRYVFPAN
CCCCCCCCCCCCCCCCCHHEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCC
RGEGRPMSENTVNAALRSLGYDKETLTGHGFRAMARTLLDEVLGFRPDIIEHQLAHAVRD
CCCCCCCCHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
PLGRAYNRTTHLPERRKMMQGWADYLDELKAGATVIRLYG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]