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The map label for this gene is yncD [H]

Identifier: 74316927

GI number: 74316927

Start: 964560

End: 966695

Strand: Direct

Name: yncD [H]

Synonym: Tbd_0909

Alternate gene names: 74316927

Gene position: 964560-966695 (Clockwise)

Preceding gene: 74316926

Following gene: 74316928

Centisome position: 33.15

GC content: 67.42

Gene sequence:

>2136_bases
ATGAAACTCACATCCATCGCGCTCGCGCTCGCGGGCGTCATCGCGGCGCCGGCCGCGTCCGCCGCCGCGCCCGCCGACGC
GGCGCTTCCGGAAATGACCGTGACCGGGACGCGCGAGGGCGAACTCCTGAGCGAGACGCCGGCGACCGTCGGCATCGTCA
AGGACACGACGCTGCGCGAAACGCGGCCGACCCACCCCAAGGAGGTCCTCAATCAGGTGCCGGGCGTCTGGGTCAGCAAT
CTTTCCGGCGAGGGGCACTCGACCGCGATCCGCCAGCCGCTGACGACGAGCGCGGTCTACCTCTACCTTGAGGACGGCAT
TCCGACGCGCTCGACCGGCTTCTTCAACCACAACGCGCTGTACGAGATCAACGTCCCGCAGGCTGGCGGCATGGAAATCA
TGAAAGGCCCGGGCAGCGCGCTCTACGGCTCGGACGCGATCGGCGGCACGATCAACGTGCTGACCCGCACGCCGCCCACC
AAGGCCGAATTCGAGGCCAGCGCCGAAGCCGGCTCGCACGGCTGGGGGCGCGTGCTCGTCGGCGGCGGCAATGCGCACGG
CGACGACGCCTGGCGCGCGAGCCTCAACCTCACGCGCACCGACGGCTGGCAGGACAACGCCGGCTACGACCGCCAGACCG
GCACCGCGCGCTGGGACCGTCTGCTCGGCGACGACGCGCTGCTGAAAACGGTGCTGTCGTTCTCCAAGGTCGACCAGCAG
CACGTCGGCAAGCTGAGCGCGGGCGAACTCGAGGCGACGCCGCGTGCCAACAACGTACCGTTCTCGTACCGCGAGGTCGA
CGCCTTCCGGCTGTCGACCGCCTACGAAAAGGAAACCGCCAACAGCCTGCTGTCGATCACGCCCTACTTCCGCGACAACA
GCATGGACATCCTTCCCAACTGGAGCGTCAGTTACGACCCGAGCCGCTACCTCACGAAGAACAAGTCCTTCGGCTTGCTC
GGCAAATACCGCCGCGACTTCGAGCCGCTGCGCGCTCGGCTCATCGTCGGCCTGGATTTCGACTACAGCCCGGGGTCGCG
CGACGAGGATTCGATTCGTCTCGACAAGACCACCAATGCCTACGGCGGCGTGACCTATAGTCTCAATCCCGCGGCACCCG
TGCAGATCTACGACTACGACGTCAGCTACCGTGGCATTTCGCCCTACGTGCACGGCGAGGCCTCGCTGACCGAACGCCTG
CGCGTCAACGCCGGCCTGCGCTACGACGACATGCGCTACGACTACGAGAATAACTTCAACGGCGGCGTCGCCGGTGCCAC
GCAAGGCGTCGCCGGGCCGTTCCCGGCCGGGGGCTGGTACGGCCACGTCGCCAGCACCGAGGTCGGCTATACACACTGGG
GGCCGAAGCTCGGCGCGACCTATGCGTTCAGCGAGGCGCTGAGCGGCTTCGCGGCCTACAGCAATTCCTTCCGCGCGCCG
TCCGAGAGCCAGGTCTTCCGCGGCAGCCGCGAGTCCACCGCGGCGAAGGCGCAGGCCGCCGCCGAGTCGCTGCTGGATCT
CAAGCCCGTGATCGTCGACAACTACGAACTCGGCCTGCGTGGCAAGGCCGGCACCGTGCGCTACGAGGCCTCGGTCTATC
ACATGGTCAAGAAGGACGACATCGTGAGCTATACCGACCCGGCCACGACGCAGAGAACCGTCGTCAACGCCGGTGAAACG
CTGCACCGCGGCGTCGAGCTCGGACTCGGCCTGCCGCTCGCGCCGGCCTGGCAGCTCGATGCGAGCCTCTCTTATGCCAA
GCACACCTACGAGTCGTGGACCGTGTCGGGAACCGCCGACTACAGCGGCAACGAAATGGAAGCCGCGCCGCGCCTGATCG
CCAACACGCGTCTGAGCTACGCCCCCGGCTTCATGAACGGCGGGCGCGTGCAGCTCGAATGGTTCCGCCTCGGCAGCTAC
TGGCTCGACGCCGCGAACACCGGCAAATACGACGGCCACGACCTTTTCAACCTGCGCGCCAACTACCCGTTCGGCAAGGG
CATGGAAGTGTTCGGCAGCATCACCAACCTGTTCGACAAGCGCTATGCCGAGACCGCCGACGGCACCGGCACCGCGCCGA
CCTATACGGCCGGGCTGCCGCGCTCGGCGGTCGTCGGCGTGCAGGCGAAGTGGTGA

Upstream 100 bases:

>100_bases
CACCAGCGCGAAACCGTCGTCGGCGTGCTGAGCGAAGCGCGCCTGCGCGCCTGGCTCGAACGGAACGTGCCCGAGTGATT
CGAAGAACAGGGGAGACCGC

Downstream 100 bases:

>100_bases
CGGAGGCGGGCGACGGCGCGGCATGAAGGCTTTGCGCATGGACTGGAATCGGGCGATCGGGCTGCTGGTCGTGGTGGGGC
TGCACGGCGGCCTGCTCTAT

Product: putative TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 711; Mature: 711

Protein sequence:

>711_residues
MKLTSIALALAGVIAAPAASAAAPADAALPEMTVTGTREGELLSETPATVGIVKDTTLRETRPTHPKEVLNQVPGVWVSN
LSGEGHSTAIRQPLTTSAVYLYLEDGIPTRSTGFFNHNALYEINVPQAGGMEIMKGPGSALYGSDAIGGTINVLTRTPPT
KAEFEASAEAGSHGWGRVLVGGGNAHGDDAWRASLNLTRTDGWQDNAGYDRQTGTARWDRLLGDDALLKTVLSFSKVDQQ
HVGKLSAGELEATPRANNVPFSYREVDAFRLSTAYEKETANSLLSITPYFRDNSMDILPNWSVSYDPSRYLTKNKSFGLL
GKYRRDFEPLRARLIVGLDFDYSPGSRDEDSIRLDKTTNAYGGVTYSLNPAAPVQIYDYDVSYRGISPYVHGEASLTERL
RVNAGLRYDDMRYDYENNFNGGVAGATQGVAGPFPAGGWYGHVASTEVGYTHWGPKLGATYAFSEALSGFAAYSNSFRAP
SESQVFRGSRESTAAKAQAAAESLLDLKPVIVDNYELGLRGKAGTVRYEASVYHMVKKDDIVSYTDPATTQRTVVNAGET
LHRGVELGLGLPLAPAWQLDASLSYAKHTYESWTVSGTADYSGNEMEAAPRLIANTRLSYAPGFMNGGRVQLEWFRLGSY
WLDAANTGKYDGHDLFNLRANYPFGKGMEVFGSITNLFDKRYAETADGTGTAPTYTAGLPRSAVVGVQAKW

Sequences:

>Translated_711_residues
MKLTSIALALAGVIAAPAASAAAPADAALPEMTVTGTREGELLSETPATVGIVKDTTLRETRPTHPKEVLNQVPGVWVSN
LSGEGHSTAIRQPLTTSAVYLYLEDGIPTRSTGFFNHNALYEINVPQAGGMEIMKGPGSALYGSDAIGGTINVLTRTPPT
KAEFEASAEAGSHGWGRVLVGGGNAHGDDAWRASLNLTRTDGWQDNAGYDRQTGTARWDRLLGDDALLKTVLSFSKVDQQ
HVGKLSAGELEATPRANNVPFSYREVDAFRLSTAYEKETANSLLSITPYFRDNSMDILPNWSVSYDPSRYLTKNKSFGLL
GKYRRDFEPLRARLIVGLDFDYSPGSRDEDSIRLDKTTNAYGGVTYSLNPAAPVQIYDYDVSYRGISPYVHGEASLTERL
RVNAGLRYDDMRYDYENNFNGGVAGATQGVAGPFPAGGWYGHVASTEVGYTHWGPKLGATYAFSEALSGFAAYSNSFRAP
SESQVFRGSRESTAAKAQAAAESLLDLKPVIVDNYELGLRGKAGTVRYEASVYHMVKKDDIVSYTDPATTQRTVVNAGET
LHRGVELGLGLPLAPAWQLDASLSYAKHTYESWTVSGTADYSGNEMEAAPRLIANTRLSYAPGFMNGGRVQLEWFRLGSY
WLDAANTGKYDGHDLFNLRANYPFGKGMEVFGSITNLFDKRYAETADGTGTAPTYTAGLPRSAVVGVQAKW
>Mature_711_residues
MKLTSIALALAGVIAAPAASAAAPADAALPEMTVTGTREGELLSETPATVGIVKDTTLRETRPTHPKEVLNQVPGVWVSN
LSGEGHSTAIRQPLTTSAVYLYLEDGIPTRSTGFFNHNALYEINVPQAGGMEIMKGPGSALYGSDAIGGTINVLTRTPPT
KAEFEASAEAGSHGWGRVLVGGGNAHGDDAWRASLNLTRTDGWQDNAGYDRQTGTARWDRLLGDDALLKTVLSFSKVDQQ
HVGKLSAGELEATPRANNVPFSYREVDAFRLSTAYEKETANSLLSITPYFRDNSMDILPNWSVSYDPSRYLTKNKSFGLL
GKYRRDFEPLRARLIVGLDFDYSPGSRDEDSIRLDKTTNAYGGVTYSLNPAAPVQIYDYDVSYRGISPYVHGEASLTERL
RVNAGLRYDDMRYDYENNFNGGVAGATQGVAGPFPAGGWYGHVASTEVGYTHWGPKLGATYAFSEALSGFAAYSNSFRAP
SESQVFRGSRESTAAKAQAAAESLLDLKPVIVDNYELGLRGKAGTVRYEASVYHMVKKDDIVSYTDPATTQRTVVNAGET
LHRGVELGLGLPLAPAWQLDASLSYAKHTYESWTVSGTADYSGNEMEAAPRLIANTRLSYAPGFMNGGRVQLEWFRLGSY
WLDAANTGKYDGHDLFNLRANYPFGKGMEVFGSITNLFDKRYAETADGTGTAPTYTAGLPRSAVVGVQAKW

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=699, Percent_Identity=23.6051502145923, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1788478, Length=149, Percent_Identity=32.2147651006711, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 76912; Mature: 76912

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTSIALALAGVIAAPAASAAAPADAALPEMTVTGTREGELLSETPATVGIVKDTTLRE
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCHHCCCCEEEEEECCCCCC
TRPTHPKEVLNQVPGVWVSNLSGEGHSTAIRQPLTTSAVYLYLEDGIPTRSTGFFNHNAL
CCCCCHHHHHHHCCCEEEECCCCCCCCHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCEE
YEINVPQAGGMEIMKGPGSALYGSDAIGGTINVLTRTPPTKAEFEASAEAGSHGWGRVLV
EEEECCCCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEE
GGGNAHGDDAWRASLNLTRTDGWQDNAGYDRQTGTARWDRLLGDDALLKTVLSFSKVDQQ
ECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCHH
HVGKLSAGELEATPRANNVPFSYREVDAFRLSTAYEKETANSLLSITPYFRDNSMDILPN
HCCCCCCCCEECCCCCCCCCCCCEECCEEEEHHHHHHHHHCCEEEEECEEECCCCEECCC
WSVSYDPSRYLTKNKSFGLLGKYRRDFEPLRARLIVGLDFDYSPGSRDEDSIRLDKTTNA
CCCCCCCHHHHCCCCCCCCHHHHHHHHHHEEEEEEEEEECCCCCCCCCCCCEEEECCCCC
YGGVTYSLNPAAPVQIYDYDVSYRGISPYVHGEASLTERLRVNAGLRYDDMRYDYENNFN
CCCEEEEECCCCCEEEEEECEEECCCCCEECCCHHHHHHHHHCCCCCCCCCEECCCCCCC
GGVAGATQGVAGPFPAGGWYGHVASTEVGYTHWGPKLGATYAFSEALSGFAAYSNSFRAP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCCC
SESQVFRGSRESTAAKAQAAAESLLDLKPVIVDNYELGLRGKAGTVRYEASVYHMVKKDD
CHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEECCEEECCCCCCCEEEEEHHEEEEECCCC
IVSYTDPATTQRTVVNAGETLHRGVELGLGLPLAPAWQLDASLSYAKHTYESWTVSGTAD
CEECCCCCCCHHHEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCC
YSGNEMEAAPRLIANTRLSYAPGFMNGGRVQLEWFRLGSYWLDAANTGKYDGHDLFNLRA
CCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCEEECCCCCCCCCCCEEEEEEE
NYPFGKGMEVFGSITNLFDKRYAETADGTGTAPTYTAGLPRSAVVGVQAKW
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEECC
>Mature Secondary Structure
MKLTSIALALAGVIAAPAASAAAPADAALPEMTVTGTREGELLSETPATVGIVKDTTLRE
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCHHCCCCEEEEEECCCCCC
TRPTHPKEVLNQVPGVWVSNLSGEGHSTAIRQPLTTSAVYLYLEDGIPTRSTGFFNHNAL
CCCCCHHHHHHHCCCEEEECCCCCCCCHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCEE
YEINVPQAGGMEIMKGPGSALYGSDAIGGTINVLTRTPPTKAEFEASAEAGSHGWGRVLV
EEEECCCCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEE
GGGNAHGDDAWRASLNLTRTDGWQDNAGYDRQTGTARWDRLLGDDALLKTVLSFSKVDQQ
ECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCHH
HVGKLSAGELEATPRANNVPFSYREVDAFRLSTAYEKETANSLLSITPYFRDNSMDILPN
HCCCCCCCCEECCCCCCCCCCCCEECCEEEEHHHHHHHHHCCEEEEECEEECCCCEECCC
WSVSYDPSRYLTKNKSFGLLGKYRRDFEPLRARLIVGLDFDYSPGSRDEDSIRLDKTTNA
CCCCCCCHHHHCCCCCCCCHHHHHHHHHHEEEEEEEEEECCCCCCCCCCCCEEEECCCCC
YGGVTYSLNPAAPVQIYDYDVSYRGISPYVHGEASLTERLRVNAGLRYDDMRYDYENNFN
CCCEEEEECCCCCEEEEEECEEECCCCCEECCCHHHHHHHHHCCCCCCCCCEECCCCCCC
GGVAGATQGVAGPFPAGGWYGHVASTEVGYTHWGPKLGATYAFSEALSGFAAYSNSFRAP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCCC
SESQVFRGSRESTAAKAQAAAESLLDLKPVIVDNYELGLRGKAGTVRYEASVYHMVKKDD
CHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEECCEEECCCCCCCEEEEEHHEEEEECCCC
IVSYTDPATTQRTVVNAGETLHRGVELGLGLPLAPAWQLDASLSYAKHTYESWTVSGTAD
CEECCCCCCCHHHEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCC
YSGNEMEAAPRLIANTRLSYAPGFMNGGRVQLEWFRLGSYWLDAANTGKYDGHDLFNLRA
CCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCEEECCCCCCCCCCCEEEEEEE
NYPFGKGMEVFGSITNLFDKRYAETADGTGTAPTYTAGLPRSAVVGVQAKW
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]