| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is norD [H]
Identifier: 74316886
GI number: 74316886
Start: 917132
End: 919249
Strand: Reverse
Name: norD [H]
Synonym: Tbd_0868
Alternate gene names: 74316886
Gene position: 919249-917132 (Counterclockwise)
Preceding gene: 74316887
Following gene: 74316885
Centisome position: 31.59
GC content: 67.42
Gene sequence:
>2118_bases ATGGCGCGGCCGCCGCTTTCCGCCGCCGACATGGAAGCCAGCCTCCATACCTGGCTGGAAACCGAGTTCACCTACTTCAA GGTCGAGGAGCTGGCCGGCGAACTCGCGGCGCTTGCGCGCGACGACCAGGACTTCATCCTCGGCTGGATCCGGCGGATCG CGTCGACGCACATCACGCTCGCCTGGCAATTCGGACGCCGCGCGCCGGCCCTGTTGCCGCGCATGGAACGGCGCCTGCTC GAGGCATGGGCCGTGCACACCTGCGACGTCTTCGACCGCACCGGCCTGCAGACCGCGCTCCGGGTCATGGAGCAGGTCGA CAGCTTCGACCCGGCGCAGCACAAACACGACGCCGCCGGCGCACTGTTCGAGGATTTTGCGCCGGTCCTCGGCAATTTCG TCTGCGGCCTGTCGGGACGCCGGTTGCGCATCGAGGAAGGCGACAAGGCATGGACCGACGGCGAACGGATCGTGCTGCCG CCGCTCGTCGCCGAATTTTCCGACCGCGACGACAACTTTCAGCTCGCCAAGGTCATGGTCGCGCTCGCCTGGGCGCAGAC CCGCTTCGGCACCTTGCGCGTCGACCATGCGCAGATCGCGGCGGGCTATGCCGACCCCGAGCGCGCGTTGAGCCGGCTCA ACGCGCTCGAGACGCTTCGCTTGAGCGCCCGCATCGCGCGCGACCTGCCGGGACTCCACCGCGAGATGCAGCGTCTGGCG CGCGTCGCCGAGCCTCTGACTCCCGCGTGGCAGGCCTTCGCGGCGCGGCTCACGCGGGACGATGCGAGCATCGACGACAG CCTCGCGCTTCTCGCTGCGGCTTACGCCGAACCTGAGTCTCCGCGCTGGACTGGTCAGCTCGACCTGCGCCCCGACGCCG TCGCCGCGGCCCGCGCGGCACGCCTGGACAAGGAAAAGGCGCGGCTGCGCGTGCGGCTCGCCGAACTCCTCGAGGAGCAG GCCGAAAACCGCGCGTCGGCCGCTTCCCAAGATACGCATCCGCCAGCGGCCGAGGTCGAGCCGCGCGACGAAGGCGGCCA GCTCGACTTCGACATCACGCTCGACGGCGTTCCGCTCGCGCCGCCCGACGACGTCCGCCAACTGCTCACCTCGGTCTACC TCGATTTCGGCGAGATCCCACCCGAATACCTCACGCCGGCCGGCGAGGGCGAATACGATCCCAACCTGGTCTTCGACCGG CCCGAGGACCCCGACGCGGTGTGGCACGGCACCTATCACGAGAAAGGCGCGGAACTGTATCCGGAATGGGATCACGGCCG TCAGCATTACCGCAAGAACTGGTGCGTGATGCGGGAAAAGACCGTGCCGCCGATCCAGGACGATTTCTACCGCCAGACGC TGGTCAAGCATCAAGGCGCGGTCAAGCAGCTGCGCCGGAAATTCGAAGCCCTGCGCGACGAGAACCGGCTCGACCGGCGA CAGACGCAGGGCGACGAGATCGACCTCGACGCGCTGGTCGAGGCCCTCGCCGACGCGAAGGACGGACGCGAAATGAGCGA CCGGCTGTTCGTCCGGCTGCACCGCGCCGAACGCAACATCGCCGTCGCGTTCCTGGTCGACATGAGCGGCTCGACCAAAG GCTGGATCAACGAGGCCGAACGCGAGGCGCTGATCCTGCTGTGCGAAGCCCTCGAACTGCTCGGCGACCGCTACGCGATC TACGGTTTCTCGGGCACCACGCGCAAACGCTGCGAACTCTTCCGGATCAAGACCTTCGACGAGCCCTATGACGACGAGGT GAAGGCGCGCATCTCTGGGATACGCCCGCAGGAATACACGCGCATGGGCTTCGCGCTGCGTCACCTCAGCAAACTGCTCA ACCAGGTCGACGCTCGGACCCGGGTGCTCGTGACGCTTTCGGACGGCCGTCCGGACGATTACTTCGACGTCTACCGCGGC GAGTACGGTGTCGAGGACACGCGCATGGCGCTGCTCGAGGCGAGCCGGACCGGCATCCACCCCTTCTGCATCACGCTCGA CCGCGAGGCGCGCGATTACCTTCCGCACATGTACGGCGCCGCGCGCTACGTCCTTCTCGACGACGTGCGACAATTGCCGC TCAAGGTCACCGACATCTATCGACGCATCACGACATGA
Upstream 100 bases:
>100_bases TCAGCCCGGTTACGGCGTGCAAATCGGCCGTCGCACAAGCGGTGACGGACGACGCGGACATGCTCAAGGCGATTCAGGAA CTCTCCTCGTCCGTCTTCTG
Downstream 100 bases:
>100_bases GCCTGGACGAACTCAAGGTAGGCTGTTTCTACAGCAACGGCGCCTACGGCAGGACCTGGGGCGTGCGTCAGCTCCTCGAA ATCCTGACCGACGATGGCAG
Product: nitric oxide reductase activation protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 705; Mature: 704
Protein sequence:
>705_residues MARPPLSAADMEASLHTWLETEFTYFKVEELAGELAALARDDQDFILGWIRRIASTHITLAWQFGRRAPALLPRMERRLL EAWAVHTCDVFDRTGLQTALRVMEQVDSFDPAQHKHDAAGALFEDFAPVLGNFVCGLSGRRLRIEEGDKAWTDGERIVLP PLVAEFSDRDDNFQLAKVMVALAWAQTRFGTLRVDHAQIAAGYADPERALSRLNALETLRLSARIARDLPGLHREMQRLA RVAEPLTPAWQAFAARLTRDDASIDDSLALLAAAYAEPESPRWTGQLDLRPDAVAAARAARLDKEKARLRVRLAELLEEQ AENRASAASQDTHPPAAEVEPRDEGGQLDFDITLDGVPLAPPDDVRQLLTSVYLDFGEIPPEYLTPAGEGEYDPNLVFDR PEDPDAVWHGTYHEKGAELYPEWDHGRQHYRKNWCVMREKTVPPIQDDFYRQTLVKHQGAVKQLRRKFEALRDENRLDRR QTQGDEIDLDALVEALADAKDGREMSDRLFVRLHRAERNIAVAFLVDMSGSTKGWINEAEREALILLCEALELLGDRYAI YGFSGTTRKRCELFRIKTFDEPYDDEVKARISGIRPQEYTRMGFALRHLSKLLNQVDARTRVLVTLSDGRPDDYFDVYRG EYGVEDTRMALLEASRTGIHPFCITLDREARDYLPHMYGAARYVLLDDVRQLPLKVTDIYRRITT
Sequences:
>Translated_705_residues MARPPLSAADMEASLHTWLETEFTYFKVEELAGELAALARDDQDFILGWIRRIASTHITLAWQFGRRAPALLPRMERRLL EAWAVHTCDVFDRTGLQTALRVMEQVDSFDPAQHKHDAAGALFEDFAPVLGNFVCGLSGRRLRIEEGDKAWTDGERIVLP PLVAEFSDRDDNFQLAKVMVALAWAQTRFGTLRVDHAQIAAGYADPERALSRLNALETLRLSARIARDLPGLHREMQRLA RVAEPLTPAWQAFAARLTRDDASIDDSLALLAAAYAEPESPRWTGQLDLRPDAVAAARAARLDKEKARLRVRLAELLEEQ AENRASAASQDTHPPAAEVEPRDEGGQLDFDITLDGVPLAPPDDVRQLLTSVYLDFGEIPPEYLTPAGEGEYDPNLVFDR PEDPDAVWHGTYHEKGAELYPEWDHGRQHYRKNWCVMREKTVPPIQDDFYRQTLVKHQGAVKQLRRKFEALRDENRLDRR QTQGDEIDLDALVEALADAKDGREMSDRLFVRLHRAERNIAVAFLVDMSGSTKGWINEAEREALILLCEALELLGDRYAI YGFSGTTRKRCELFRIKTFDEPYDDEVKARISGIRPQEYTRMGFALRHLSKLLNQVDARTRVLVTLSDGRPDDYFDVYRG EYGVEDTRMALLEASRTGIHPFCITLDREARDYLPHMYGAARYVLLDDVRQLPLKVTDIYRRITT >Mature_704_residues ARPPLSAADMEASLHTWLETEFTYFKVEELAGELAALARDDQDFILGWIRRIASTHITLAWQFGRRAPALLPRMERRLLE AWAVHTCDVFDRTGLQTALRVMEQVDSFDPAQHKHDAAGALFEDFAPVLGNFVCGLSGRRLRIEEGDKAWTDGERIVLPP LVAEFSDRDDNFQLAKVMVALAWAQTRFGTLRVDHAQIAAGYADPERALSRLNALETLRLSARIARDLPGLHREMQRLAR VAEPLTPAWQAFAARLTRDDASIDDSLALLAAAYAEPESPRWTGQLDLRPDAVAAARAARLDKEKARLRVRLAELLEEQA ENRASAASQDTHPPAAEVEPRDEGGQLDFDITLDGVPLAPPDDVRQLLTSVYLDFGEIPPEYLTPAGEGEYDPNLVFDRP EDPDAVWHGTYHEKGAELYPEWDHGRQHYRKNWCVMREKTVPPIQDDFYRQTLVKHQGAVKQLRRKFEALRDENRLDRRQ TQGDEIDLDALVEALADAKDGREMSDRLFVRLHRAERNIAVAFLVDMSGSTKGWINEAEREALILLCEALELLGDRYAIY GFSGTTRKRCELFRIKTFDEPYDDEVKARISGIRPQEYTRMGFALRHLSKLLNQVDARTRVLVTLSDGRPDDYFDVYRGE YGVEDTRMALLEASRTGIHPFCITLDREARDYLPHMYGAARYVLLDDVRQLPLKVTDIYRRITT
Specific function: Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification) [H]
COG id: COG4548
COG function: function code P; Nitric oxide reductase activation protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 VWFA domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002035 [H]
Pfam domain/function: PF00092 VWA [H]
EC number: NA
Molecular weight: Translated: 80258; Mature: 80126
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARPPLSAADMEASLHTWLETEFTYFKVEELAGELAALARDDQDFILGWIRRIASTHITL CCCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHCEEEE AWQFGRRAPALLPRMERRLLEAWAVHTCDVFDRTGLQTALRVMEQVDSFDPAQHKHDAAG EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHH ALFEDFAPVLGNFVCGLSGRRLRIEEGDKAWTDGERIVLPPLVAEFSDRDDNFQLAKVMV HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEECHHHHHCCCCCCCHHHHHHHH ALAWAQTRFGTLRVDHAQIAAGYADPERALSRLNALETLRLSARIARDLPGLHREMQRLA HHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH RVAEPLTPAWQAFAARLTRDDASIDDSLALLAAAYAEPESPRWTGQLDLRPDAVAAARAA HHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHH RLDKEKARLRVRLAELLEEQAENRASAASQDTHPPAAEVEPRDEGGQLDFDITLDGVPLA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC PPDDVRQLLTSVYLDFGEIPPEYLTPAGEGEYDPNLVFDRPEDPDAVWHGTYHEKGAELY CHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCEEECCCCCCCCEECCCHHCCCCCCC PEWDHGRQHYRKNWCVMREKTVPPIQDDFYRQTLVKHQGAVKQLRRKFEALRDENRLDRR CCHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QTQGDEIDLDALVEALADAKDGREMSDRLFVRLHRAERNIAVAFLVDMSGSTKGWINEAE HCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHH REALILLCEALELLGDRYAIYGFSGTTRKRCELFRIKTFDEPYDDEVKARISGIRPQEYT HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHEEEEECCCCCCCHHHHHHHCCCCCHHHH RMGFALRHLSKLLNQVDARTRVLVTLSDGRPDDYFDVYRGEYGVEDTRMALLEASRTGIH HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCC PFCITLDREARDYLPHMYGAARYVLLDDVRQLPLKVTDIYRRITT EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC >Mature Secondary Structure ARPPLSAADMEASLHTWLETEFTYFKVEELAGELAALARDDQDFILGWIRRIASTHITL CCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHCEEEE AWQFGRRAPALLPRMERRLLEAWAVHTCDVFDRTGLQTALRVMEQVDSFDPAQHKHDAAG EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHH ALFEDFAPVLGNFVCGLSGRRLRIEEGDKAWTDGERIVLPPLVAEFSDRDDNFQLAKVMV HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEECHHHHHCCCCCCCHHHHHHHH ALAWAQTRFGTLRVDHAQIAAGYADPERALSRLNALETLRLSARIARDLPGLHREMQRLA HHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH RVAEPLTPAWQAFAARLTRDDASIDDSLALLAAAYAEPESPRWTGQLDLRPDAVAAARAA HHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHH RLDKEKARLRVRLAELLEEQAENRASAASQDTHPPAAEVEPRDEGGQLDFDITLDGVPLA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC PPDDVRQLLTSVYLDFGEIPPEYLTPAGEGEYDPNLVFDRPEDPDAVWHGTYHEKGAELY CHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCEEECCCCCCCCEECCCHHCCCCCCC PEWDHGRQHYRKNWCVMREKTVPPIQDDFYRQTLVKHQGAVKQLRRKFEALRDENRLDRR CCHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QTQGDEIDLDALVEALADAKDGREMSDRLFVRLHRAERNIAVAFLVDMSGSTKGWINEAE HCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHH REALILLCEALELLGDRYAIYGFSGTTRKRCELFRIKTFDEPYDDEVKARISGIRPQEYT HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHEEEEECCCCCCCHHHHHHHCCCCCHHHH RMGFALRHLSKLLNQVDARTRVLVTLSDGRPDDYFDVYRGEYGVEDTRMALLEASRTGIH HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCC PFCITLDREARDYLPHMYGAARYVLLDDVRQLPLKVTDIYRRITT EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11274111; 7508388 [H]