| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is imuB [H]
Identifier: 74316847
GI number: 74316847
Start: 874154
End: 875557
Strand: Reverse
Name: imuB [H]
Synonym: Tbd_0829
Alternate gene names: 74316847
Gene position: 875557-874154 (Counterclockwise)
Preceding gene: 74316848
Following gene: 74316846
Centisome position: 30.09
GC content: 73.01
Gene sequence:
>1404_bases ATGTTGTGGCTCGCCCTCCATTTCCCGGCGCTTTCCCTCGAAGTCTTCACCCGGGGCAGCGCGTCCGCCCTGCCGCTCGC CGTCGTCGAGAAGCAGGGCAACCGCACCTGGGTGATCGCCCGCAACGACCCGGCCGCCGAGCGCGGCGTGCGCCCCGGGA TGGCCGCTTCCGCCGCGCAGGCGCTGGCGGACGAACTCGTCGTGCGCCAGCGCGACCCCGGGGACGAACAGGCGGCCCTG ACGGGACTTGCAGCCTGGGCGGGGCGATTCACTCCTTCAGTGAGCCTGCAGGCGCCCGACGGCTTGCTGCTCGAAGTCGG CACTTGCCTGACCCTGCACCGCGGCCTCGACAACCTGCGGGCCCGGGTTCGCGAAGGCGTCGACGCCATGGCCTATAGCG CCACTTCCGCCTGCGCGCCGACCGCGCTCGGCGCCTGGCTGCTCGCGCAGGCCGGCGAGGAAACCGCCGTCGACGCAAAC GCACTCGAAGCCAGGCTCGCCCGCCTGCCGGTCGGCCTGCTCGATCTTTCCCCCGACACGCGCGAAAGCCTCGACCTCGT CGGCGCGCACACCCTCGGCGATTGCCTGAAGCTGCCACGGGCCGGTCTCGCGCGCCGCTACGGCCAGGGCCTGCTCGACC AGCTCGACCGGGCGCTCGGCCGCCTGCCCGAACCACGCGCCTTTTTCGCGCCGCCGCCGCGTTTCGAGCGCCGCCTCGAA CTGCCGGCGCCGGTCGAGCACGCCGAAGCCCTGCTCTTCGTCGCGCGCCGCCTGCTGCCGGAGCTCGAAGGCTATCTCGC GCTGCGCCAGGCCGGCGTGCAGGCACTCGAATACGTCTGCCGCCACGAAGGCCGGCCGGATACCGTCCTCAAGCTCGGCT TCGTCAAGCCGGTGCGCGCGGCGAGCCGCATGCTGCTCCTGCTGCGCGAAACGCTCGAACGCACCGTCCTGCCGGCGCCG GTATATGCGGTGCGGCTCAGGGCGCGTCGGCTCCAGCCTTTGCACGGGTCGAGCCCGGACCTGTTCCAGCGCGGCGAGGA AGCCGGCGACGGCGACCTTCTGCTCGAACGCCTGCGCGTCCGCCTCGGCCGCGACGCGGTCTACGGCGTCGAAGCCGTGG CCGACCACCGCCCCGAGCGCGCCTGGCGCCGCTGCGAAGCCGGCACCCGGACGAAGCCTGCCGCGGCCCCCAAGCGTCCG CTGTGGCTGCTGCCGCGTCCCCTCCCCTGCCGCAACGGCGACCTCGTCCTCAAAGGCGCTGTCGAACGCATCGAGAGCGG CTGGTGGGACGGCCGCGACGCAACGCGCGACTACTACGTCGCCCAGGACCGCGCCGGCGCCCGGCTCTGGGTCTACTGCG AACGCGCGACCGGCGAATGGTTCGTGCACGGGTTGTTCGCCTGA
Upstream 100 bases:
>100_bases CCTGCGGCCTGCGGGCAGTGGCCCGGCCTCCACGCTGTCGACAGGCCCTGCACGGAAAACCGCTTCGCACGCTTCCTGAA GCAGGGTGTGAGTAAGTCTC
Downstream 100 bases:
>100_bases GAGGAGGGGTCAGGGGTCGGGATTCAGGGGTCAGGGGAAGTGCGGGCGATGCCCGCGCCTCCCTGATCCCTGATCCCTGA TCCCTGATCCCTGACCCCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 467; Mature: 467
Protein sequence:
>467_residues MLWLALHFPALSLEVFTRGSASALPLAVVEKQGNRTWVIARNDPAAERGVRPGMAASAAQALADELVVRQRDPGDEQAAL TGLAAWAGRFTPSVSLQAPDGLLLEVGTCLTLHRGLDNLRARVREGVDAMAYSATSACAPTALGAWLLAQAGEETAVDAN ALEARLARLPVGLLDLSPDTRESLDLVGAHTLGDCLKLPRAGLARRYGQGLLDQLDRALGRLPEPRAFFAPPPRFERRLE LPAPVEHAEALLFVARRLLPELEGYLALRQAGVQALEYVCRHEGRPDTVLKLGFVKPVRAASRMLLLLRETLERTVLPAP VYAVRLRARRLQPLHGSSPDLFQRGEEAGDGDLLLERLRVRLGRDAVYGVEAVADHRPERAWRRCEAGTRTKPAAAPKRP LWLLPRPLPCRNGDLVLKGAVERIESGWWDGRDATRDYYVAQDRAGARLWVYCERATGEWFVHGLFA
Sequences:
>Translated_467_residues MLWLALHFPALSLEVFTRGSASALPLAVVEKQGNRTWVIARNDPAAERGVRPGMAASAAQALADELVVRQRDPGDEQAAL TGLAAWAGRFTPSVSLQAPDGLLLEVGTCLTLHRGLDNLRARVREGVDAMAYSATSACAPTALGAWLLAQAGEETAVDAN ALEARLARLPVGLLDLSPDTRESLDLVGAHTLGDCLKLPRAGLARRYGQGLLDQLDRALGRLPEPRAFFAPPPRFERRLE LPAPVEHAEALLFVARRLLPELEGYLALRQAGVQALEYVCRHEGRPDTVLKLGFVKPVRAASRMLLLLRETLERTVLPAP VYAVRLRARRLQPLHGSSPDLFQRGEEAGDGDLLLERLRVRLGRDAVYGVEAVADHRPERAWRRCEAGTRTKPAAAPKRP LWLLPRPLPCRNGDLVLKGAVERIESGWWDGRDATRDYYVAQDRAGARLWVYCERATGEWFVHGLFA >Mature_467_residues MLWLALHFPALSLEVFTRGSASALPLAVVEKQGNRTWVIARNDPAAERGVRPGMAASAAQALADELVVRQRDPGDEQAAL TGLAAWAGRFTPSVSLQAPDGLLLEVGTCLTLHRGLDNLRARVREGVDAMAYSATSACAPTALGAWLLAQAGEETAVDAN ALEARLARLPVGLLDLSPDTRESLDLVGAHTLGDCLKLPRAGLARRYGQGLLDQLDRALGRLPEPRAFFAPPPRFERRLE LPAPVEHAEALLFVARRLLPELEGYLALRQAGVQALEYVCRHEGRPDTVLKLGFVKPVRAASRMLLLLRETLERTVLPAP VYAVRLRARRLQPLHGSSPDLFQRGEEAGDGDLLLERLRVRLGRDAVYGVEAVADHRPERAWRRCEAGTRTKPAAAPKRP LWLLPRPLPCRNGDLVLKGAVERIESGWWDGRDATRDYYVAQDRAGARLWVYCERATGEWFVHGLFA
Specific function: Along with dnaE2 and imuA is required for the error- prone processing of DNA lesions [H]
COG id: COG0389
COG function: function code L; Nucleotidyltransferase/DNA polymerase involved in DNA repair
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001126 [H]
Pfam domain/function: PF00817 IMS [H]
EC number: NA
Molecular weight: Translated: 51292; Mature: 51292
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLWLALHFPALSLEVFTRGSASALPLAVVEKQGNRTWVIARNDPAAERGVRPGMAASAAQ CEEEEEECCCEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCHHHHCCCCCHHHHHHH ALADELVVRQRDPGDEQAALTGLAAWAGRFTPSVSLQAPDGLLLEVGTCLTLHRGLDNLR HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCEEHHHHHHHHHHCHHHHH ARVREGVDAMAYSATSACAPTALGAWLLAQAGEETAVDANALEARLARLPVGLLDLSPDT HHHHHCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEECCCCC RESLDLVGAHTLGDCLKLPRAGLARRYGQGLLDQLDRALGRLPEPRAFFAPPPRFERRLE HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCC LPAPVEHAEALLFVARRLLPELEGYLALRQAGVQALEYVCRHEGRPDTVLKLGFVKPVRA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHH ASRMLLLLRETLERTVLPAPVYAVRLRARRLQPLHGSSPDLFQRGEEAGDGDLLLERLRV HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHH RLGRDAVYGVEAVADHRPERAWRRCEAGTRTKPAAAPKRPLWLLPRPLPCRNGDLVLKGA HHCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEHHH VERIESGWWDGRDATRDYYVAQDRAGARLWVYCERATGEWFVHGLFA HHHHHCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEECCC >Mature Secondary Structure MLWLALHFPALSLEVFTRGSASALPLAVVEKQGNRTWVIARNDPAAERGVRPGMAASAAQ CEEEEEECCCEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCHHHHCCCCCHHHHHHH ALADELVVRQRDPGDEQAALTGLAAWAGRFTPSVSLQAPDGLLLEVGTCLTLHRGLDNLR HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCEEHHHHHHHHHHCHHHHH ARVREGVDAMAYSATSACAPTALGAWLLAQAGEETAVDANALEARLARLPVGLLDLSPDT HHHHHCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEECCCCC RESLDLVGAHTLGDCLKLPRAGLARRYGQGLLDQLDRALGRLPEPRAFFAPPPRFERRLE HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCC LPAPVEHAEALLFVARRLLPELEGYLALRQAGVQALEYVCRHEGRPDTVLKLGFVKPVRA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHH ASRMLLLLRETLERTVLPAPVYAVRLRARRLQPLHGSSPDLFQRGEEAGDGDLLLERLRV HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHH RLGRDAVYGVEAVADHRPERAWRRCEAGTRTKPAAAPKRPLWLLPRPLPCRNGDLVLKGA HHCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEHHH VERIESGWWDGRDATRDYYVAQDRAGARLWVYCERATGEWFVHGLFA HHHHHCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA