| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is map [H]
Identifier: 74316802
GI number: 74316802
Start: 827495
End: 828304
Strand: Reverse
Name: map [H]
Synonym: Tbd_0784
Alternate gene names: 74316802
Gene position: 828304-827495 (Counterclockwise)
Preceding gene: 74316819
Following gene: 74316801
Centisome position: 28.47
GC content: 66.17
Gene sequence:
>810_bases ATGACCGTCTCCATCAAAACCGGCGCCGACATCGACAACATGCGCGTCGCCGGCCGCCTCGCCTCCGAAGTGCTCGACTA CATCACGCCCTTCGTCAAACCCGGCGTCACGACCGGCGAACTCGACCGGCTATGCCACGCGTACATGGTCGACGTTCAAG GCACCGTGCCGGCGCCGCTGAACTACGCGCCCTCGGGCCATGCGCCCTACCCCAAATCGATCTGCACTTCGGTGAACAAC CAGGTCTGCCACGGGGTGCCGGGCGACAAGGTGCTGAAGAACGGCGACATCGTCAACCTCGACATCACGGTCATCAAGGA CGGGTGGCACGGCGATACGAGCCGCATGTTCGCGGTCGGTGAGGCGACGATCCAGGCCAGGCGGCTGATCCAGATCACCT ACGAGGCGATGTGGGTCGGCATCGACCGGGTGAAGCCCGGCGCGCGCCTCGGCGACATCGGCCACGCGATCCAGCGTTTC GCCGAGAACCACGGCTACAGCGTGGTGCGCGAGTTCTGCGGCCACGGCATCGGCCGCAATTTCCACGAGGAACCGCAGGT CCTGCATTACGGCAAGGCCGGAACCGGCTTGCTGCTCGAACCCGGCATGACCTTCACGATCGAGCCGATGATCAACGCGG GCCGGCGCGACATCCGGCAGATGCCGGACGGCTGGACGATCGTGACCAAGGACCGCAGCCTGTCCGCGCAATGGGAACAC ACCGTGCTCGTCACCGACAGCGGCTACGAGGTGCTGACCGTGTCGGCGGGCACGCCGGCCGTGCCCGACCGCATACTTCA CCCGGCGTGA
Upstream 100 bases:
>100_bases GTGACGTCGGTGCCCGCCGTTTCTCATCTCCGCCCTGTGGATATGGTTTTTCGCACCGGCGGCGGCGCTAAAATGCGCCT TTGATTCCCATCTGCCTTAC
Downstream 100 bases:
>100_bases GCGCCCGGCCGTTCGCCGATCTGCGCGAGCGGCTGAAGTCCGGCCGCGCGAGCCTGGCAGCGGCGTACCGCGAAAAGCCG CGTGCGGCACACTATCTCGC
Product: methionine aminopeptidase
Products: NA
Alternate protein names: MAP; Peptidase M [H]
Number of amino acids: Translated: 269; Mature: 268
Protein sequence:
>269_residues MTVSIKTGADIDNMRVAGRLASEVLDYITPFVKPGVTTGELDRLCHAYMVDVQGTVPAPLNYAPSGHAPYPKSICTSVNN QVCHGVPGDKVLKNGDIVNLDITVIKDGWHGDTSRMFAVGEATIQARRLIQITYEAMWVGIDRVKPGARLGDIGHAIQRF AENHGYSVVREFCGHGIGRNFHEEPQVLHYGKAGTGLLLEPGMTFTIEPMINAGRRDIRQMPDGWTIVTKDRSLSAQWEH TVLVTDSGYEVLTVSAGTPAVPDRILHPA
Sequences:
>Translated_269_residues MTVSIKTGADIDNMRVAGRLASEVLDYITPFVKPGVTTGELDRLCHAYMVDVQGTVPAPLNYAPSGHAPYPKSICTSVNN QVCHGVPGDKVLKNGDIVNLDITVIKDGWHGDTSRMFAVGEATIQARRLIQITYEAMWVGIDRVKPGARLGDIGHAIQRF AENHGYSVVREFCGHGIGRNFHEEPQVLHYGKAGTGLLLEPGMTFTIEPMINAGRRDIRQMPDGWTIVTKDRSLSAQWEH TVLVTDSGYEVLTVSAGTPAVPDRILHPA >Mature_268_residues TVSIKTGADIDNMRVAGRLASEVLDYITPFVKPGVTTGELDRLCHAYMVDVQGTVPAPLNYAPSGHAPYPKSICTSVNNQ VCHGVPGDKVLKNGDIVNLDITVIKDGWHGDTSRMFAVGEATIQARRLIQITYEAMWVGIDRVKPGARLGDIGHAIQRFA ENHGYSVVREFCGHGIGRNFHEEPQVLHYGKAGTGLLLEPGMTFTIEPMINAGRRDIRQMPDGWTIVTKDRSLSAQWEHT VLVTDSGYEVLTVSAGTPAVPDRILHPA
Specific function: Removes the amino-terminal methionine from nascent proteins [H]
COG id: COG0024
COG function: function code J; Methionine aminopeptidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M24A family [H]
Homologues:
Organism=Homo sapiens, GI164420681, Length=251, Percent_Identity=47.808764940239, Blast_Score=239, Evalue=2e-63, Organism=Homo sapiens, GI40385867, Length=252, Percent_Identity=37.6984126984127, Blast_Score=184, Evalue=5e-47, Organism=Escherichia coli, GI1786364, Length=255, Percent_Identity=62.3529411764706, Blast_Score=338, Evalue=2e-94, Organism=Escherichia coli, GI1788728, Length=214, Percent_Identity=26.1682242990654, Blast_Score=69, Evalue=4e-13, Organism=Caenorhabditis elegans, GI71996291, Length=265, Percent_Identity=42.2641509433962, Blast_Score=216, Evalue=1e-56, Organism=Saccharomyces cerevisiae, GI6323273, Length=254, Percent_Identity=43.3070866141732, Blast_Score=212, Evalue=6e-56, Organism=Drosophila melanogaster, GI21355531, Length=266, Percent_Identity=43.609022556391, Blast_Score=229, Evalue=2e-60, Organism=Drosophila melanogaster, GI24583427, Length=249, Percent_Identity=40.9638554216867, Blast_Score=205, Evalue=2e-53,
Paralogues:
None
Copy number: 3,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001714 - InterPro: IPR000994 - InterPro: IPR002467 [H]
Pfam domain/function: PF00557 Peptidase_M24 [H]
EC number: =3.4.11.18 [H]
Molecular weight: Translated: 29337; Mature: 29206
Theoretical pI: Translated: 6.74; Mature: 6.74
Prosite motif: PS00680 MAP_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVSIKTGADIDNMRVAGRLASEVLDYITPFVKPGVTTGELDRLCHAYMVDVQGTVPAPL CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEECCCCCCCC NYAPSGHAPYPKSICTSVNNQVCHGVPGDKVLKNGDIVNLDITVIKDGWHGDTSRMFAVG CCCCCCCCCCCHHHHHHCCCCEECCCCCCCEECCCCEEEEEEEEEECCCCCCCCEEEEEC EATIQARRLIQITYEAMWVGIDRVKPGARLGDIGHAIQRFAENHGYSVVREFCGHGIGRN HHHHHHHHHHEEEEHHHEEEHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCC FHEEPQVLHYGKAGTGLLLEPGMTFTIEPMINAGRRDIRQMPDGWTIVTKDRSLSAQWEH CCCCCCEEEECCCCCCEEECCCCCEEECHHHCCCHHHHHHCCCCCEEEEECCCCCCCCCE TVLVTDSGYEVLTVSAGTPAVPDRILHPA EEEEECCCCEEEEEECCCCCCCCCCCCCC >Mature Secondary Structure TVSIKTGADIDNMRVAGRLASEVLDYITPFVKPGVTTGELDRLCHAYMVDVQGTVPAPL EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEECCCCCCCC NYAPSGHAPYPKSICTSVNNQVCHGVPGDKVLKNGDIVNLDITVIKDGWHGDTSRMFAVG CCCCCCCCCCCHHHHHHCCCCEECCCCCCCEECCCCEEEEEEEEEECCCCCCCCEEEEEC EATIQARRLIQITYEAMWVGIDRVKPGARLGDIGHAIQRFAENHGYSVVREFCGHGIGRN HHHHHHHHHHEEEEHHHEEEHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCC FHEEPQVLHYGKAGTGLLLEPGMTFTIEPMINAGRRDIRQMPDGWTIVTKDRSLSAQWEH CCCCCCEEEECCCCCCEEECCCCCEEECHHHCCCHHHHHHCCCCCEEEEECCCCCCCCCE TVLVTDSGYEVLTVSAGTPAVPDRILHPA EEEEECCCCEEEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]