| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74316763
Identifier: 74316763
GI number: 74316763
Start: 788923
End: 789993
Strand: Reverse
Name: 74316763
Synonym: Tbd_0745
Alternate gene names: NA
Gene position: 789993-788923 (Counterclockwise)
Preceding gene: 74316765
Following gene: 74316762
Centisome position: 27.15
GC content: 72.46
Gene sequence:
>1071_bases ATGAGCGCGTACCCCGCCCGCGCGACGCCCCCGCGGAACGCGCCGTCCGACCCGCGCGCGAGTGCGCCCGAGGGCCTCAA CTACATCGGCGCCGGCACGCCGGGCATCCGGCGGGTGCGCCGCGGCGCGCGCTTCGTCTACCTCGACCCGGACGGCCGGC GCATCCGGGACCGCGAGGAAATCGCACGCATCGCCCGGCTCGCGATCCCGCCGGCCTACGTCGACGTCTGGATCTGCGCC GATCCGCGCGGGCACCTGCAGGCGACCGGGCGCGACGCGCGGGGACGCAAGCAGTACCGCTACCATCCGGCGTGGATCGC GGCGCGCGGCACCGACAAGTACTGCCGCATGCTCGGCTTCGGCCACGCGCTGCCGAAGCTGCGCGCGGCGATCGCGGCCC ATCTCGACGCGCCGGGGCTGGCGGCCGACAAGGTCATGGCGACCGTCGTCGCCCTGCTCGAACAGACGCTGATCCGGGTC GGCAACCCGCAATACGCGCGCGAGAACGCGTCCTTCGGGCTGACCACGCTGCAGAACCGGCACGTCGCGGTGCGCGGCAG CGCCGTGCAGTTTCGCTTCACCGGCAAGAGCGGCATCAAACATTGCCGCACGCTCGAGCATCCCCGCCTCGCGCGCATCC TCAAGCGTTGCCAGGAGCTGCCCGGGCAGCAGCTTTTTCAATATCTCGACACCGACGGCCACCCGCGGCCGGTGACTTCG AACGACGTCAACGCCTATCTCCGGGCACACGGCGGCGGCGACTACACCGCCAAGGATTACCGCACCTGGGCCGGCAGCGC GCTCGCGCTCGCGCTATTCCGTCGCCTGCCCTGGCAGAGCCGCGGCGAGGCCGAGCGCCGGGTCTCCGGGGTCATCGCCG AGGTCGCCGCGCAGCTCGGCAACACGCCGGCGGTCTGCAGGAAGTGTTACGTCCATCCGGCCATCGTCGAGGCCTTCGTC GCGGGCGAACTCGCGGCCCTCGCCCGTCCGCGGCGCCGCAAGCATCTGAACGCCGACGAGGCCGCGCTGCTCGGCTTTCT CGAAACGCAGCACGAGGCGCGCTGCGCCTGA
Upstream 100 bases:
>100_bases TCACGATCCTTGAACTGTCCCGCATCGGAGAAGCCATGACGCCCTGCGCACGACGCGCTCCGCCCCGTCTCGCGTTGTCG CCGGCGCCGCGCGGCAGCCG
Downstream 100 bases:
>100_bases GCTGCCGCGCAGCGCCGGCCCAGGTATCTGGCCAAGGCACGGCGCTTGCTGGTGCGGAACAGGGACCAAACCGCCCGGCG TTCCGGGCGCCCGCGCAAGG
Product: hypothetical protein
Products: NA
Alternate protein names: DNA poisomerase I; DNA poisomerase Type I; DNA poisomerase IB; Type I poisomerase; DNA poisomerase I Protein; Poisomerase IB; Poisomerase IB-Like Protein; DNA poisomerase I-Like Protein; Viral-Like DNA poisomerase; DNA poisomerase ; Eukaryotic-Like DNA poisomerase I; DNA poisomerasei; -Like DNA poisomerase I; Type I DNA poisomerase
Number of amino acids: Translated: 356; Mature: 355
Protein sequence:
>356_residues MSAYPARATPPRNAPSDPRASAPEGLNYIGAGTPGIRRVRRGARFVYLDPDGRRIRDREEIARIARLAIPPAYVDVWICA DPRGHLQATGRDARGRKQYRYHPAWIAARGTDKYCRMLGFGHALPKLRAAIAAHLDAPGLAADKVMATVVALLEQTLIRV GNPQYARENASFGLTTLQNRHVAVRGSAVQFRFTGKSGIKHCRTLEHPRLARILKRCQELPGQQLFQYLDTDGHPRPVTS NDVNAYLRAHGGGDYTAKDYRTWAGSALALALFRRLPWQSRGEAERRVSGVIAEVAAQLGNTPAVCRKCYVHPAIVEAFV AGELAALARPRRRKHLNADEAALLGFLETQHEARCA
Sequences:
>Translated_356_residues MSAYPARATPPRNAPSDPRASAPEGLNYIGAGTPGIRRVRRGARFVYLDPDGRRIRDREEIARIARLAIPPAYVDVWICA DPRGHLQATGRDARGRKQYRYHPAWIAARGTDKYCRMLGFGHALPKLRAAIAAHLDAPGLAADKVMATVVALLEQTLIRV GNPQYARENASFGLTTLQNRHVAVRGSAVQFRFTGKSGIKHCRTLEHPRLARILKRCQELPGQQLFQYLDTDGHPRPVTS NDVNAYLRAHGGGDYTAKDYRTWAGSALALALFRRLPWQSRGEAERRVSGVIAEVAAQLGNTPAVCRKCYVHPAIVEAFV AGELAALARPRRRKHLNADEAALLGFLETQHEARCA >Mature_355_residues SAYPARATPPRNAPSDPRASAPEGLNYIGAGTPGIRRVRRGARFVYLDPDGRRIRDREEIARIARLAIPPAYVDVWICAD PRGHLQATGRDARGRKQYRYHPAWIAARGTDKYCRMLGFGHALPKLRAAIAAHLDAPGLAADKVMATVVALLEQTLIRVG NPQYARENASFGLTTLQNRHVAVRGSAVQFRFTGKSGIKHCRTLEHPRLARILKRCQELPGQQLFQYLDTDGHPRPVTSN DVNAYLRAHGGGDYTAKDYRTWAGSALALALFRRLPWQSRGEAERRVSGVIAEVAAQLGNTPAVCRKCYVHPAIVEAFVA GELAALARPRRRKHLNADEAALLGFLETQHEARCA
Specific function: Unknown
COG id: COG3569
COG function: function code L; Topoisomerase IB
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39296; Mature: 39165
Theoretical pI: Translated: 10.74; Mature: 10.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAYPARATPPRNAPSDPRASAPEGLNYIGAGTPGIRRVRRGARFVYLDPDGRRIRDREE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCHHH IARIARLAIPPAYVDVWICADPRGHLQATGRDARGRKQYRYHPAWIAARGTDKYCRMLGF HHHHHHHCCCCCCEEEEEEECCCCCCEECCCCCCCCCCEEECCEEEEECCCHHHHHHHHH GHALPKLRAAIAAHLDAPGLAADKVMATVVALLEQTLIRVGNPQYARENASFGLTTLQNR HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEECCC HVAVRGSAVQFRFTGKSGIKHCRTLEHPRLARILKRCQELPGQQLFQYLDTDGHPRPVTS EEEEECCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCC NDVNAYLRAHGGGDYTAKDYRTWAGSALALALFRRLPWQSRGEAERRVSGVIAEVAAQLG CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC NTPAVCRKCYVHPAIVEAFVAGELAALARPRRRKHLNADEAALLGFLETQHEARCA CCHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure SAYPARATPPRNAPSDPRASAPEGLNYIGAGTPGIRRVRRGARFVYLDPDGRRIRDREE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCHHH IARIARLAIPPAYVDVWICADPRGHLQATGRDARGRKQYRYHPAWIAARGTDKYCRMLGF HHHHHHHCCCCCCEEEEEEECCCCCCEECCCCCCCCCCEEECCEEEEECCCHHHHHHHHH GHALPKLRAAIAAHLDAPGLAADKVMATVVALLEQTLIRVGNPQYARENASFGLTTLQNR HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEECCC HVAVRGSAVQFRFTGKSGIKHCRTLEHPRLARILKRCQELPGQQLFQYLDTDGHPRPVTS EEEEECCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCC NDVNAYLRAHGGGDYTAKDYRTWAGSALALALFRRLPWQSRGEAERRVSGVIAEVAAQLG CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC NTPAVCRKCYVHPAIVEAFVAGELAALARPRRRKHLNADEAALLGFLETQHEARCA CCHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA