| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
Click here to switch to the map view.
The map label for this gene is ppc [H]
Identifier: 74316648
GI number: 74316648
Start: 665633
End: 668452
Strand: Direct
Name: ppc [H]
Synonym: Tbd_0630
Alternate gene names: 74316648
Gene position: 665633-668452 (Clockwise)
Preceding gene: 74316647
Following gene: 74316649
Centisome position: 22.88
GC content: 65.43
Gene sequence:
>2820_bases ATGAACGCACCCCAGAATCTCTTGACCGACGACGATCTGCGCGCGCAGGTCAAGCTTCTCGGCACCCTGCTCGGCCAGGT GCTGCTGCAGTTCGCCGGGGAAGACGTGTTCGAGGCGGTGGAAACCCTGCGGCGCGGCTTTGCCGACTTGCAGCAGCAGG AAGACCAGCAGCGGCGCAGCGAACTGATGGCCATGATCGACGCGATGCCGGCCGGCAAGATCGAGCTGGTCGTACGCGCG TTCTCGAGCTATTTCATGCTGGTCAACGTAGCCGAGGAAAGCTTCGCGCACCGCAACCGCCGTCGCATGCTGTCGCACGG CATGACGCTGTGGGAAGGCTCGTTCGACCACACGCTCGCCGATCTCAAGGCGCAGGGCCTGTCGGCGGGCACGCTGCAGG GGCTGATCAACCGCCTGCACTTCGCGCCTGTCTTTACCGCGCATCCGACCGAAGCCCGGCGCCGCGCCGTGATGGAGGCC ATGCGCAGGATATTCCTGATCTGCGACCAGCTCTACAGCCCGAGCCTCGGCGTCAACGACCAGCGCGAGCTCGAGGCGCA GCTCGCGGCCGAGATCCAGATCATGTGGCGCACCGACGAACTGCGCAGCGCCAAGCTCGAGGTGCGCGACGAAGTGCGCA ACGGCCTCTATTACGTGCGCGAGAGCCTGTTCGAGGCGGTGCCCAAGGCCTACAGCTTCTTCGAGCGCGCGCTGCGCAAG CACTACGGCGTGAACGGCGACGGCGCGGCGCCGATCAGCGTGCCGAGCTTCATCCGCTTCGGCTCGTGGATCGGCGGCGA CCGCGACGGCAACCCCTTCGTCACCGCCGACGTGACCGAATGGACCGTGCATACGCAGATGCAGGCGGCGCTCGACGAAT ACCGCGCGCGCGTGCGCGAGTTGCGGCAGACACTCACCCACAGTAGCGGCTGGTGCACGCCGTCCGCGCCGTTTCTCGAG CGCCTGGCCGAATACGAGGCCGAGTTCGGCGAGCAGGTGTTCCGCGGCACCGCGGTGCAGATCTACAGCCGCGAACCTTA CCGCCGCATGGCCGCGATGATGCTCGCGCGGCTCGACGCGAATCTCTCGTACGTGCACCAGTGCCTCGCCGACGTGCCGA GTTTCACCTCGCATCTCGCCTACGAAGACGCAGCGGCCTTCCTCGCCGACCTGTATCTGATCCGCGACTCCCTGATCAGC CACGGCGACCGCATCATCGCGATGCAGGACCTGCAGGCACTGATCCGCCTGGTCGAGAGTTTCGGCTTTCACCTGCTGCA GCTCGACATCCGCCAGGAATCGACGATCCACACGCGGACCGTGGCGGCGGTGCTGCAGCAGATCGACCCCGACTTCGACT ACAAAGGCGCCGATGAAGCCGAGCGTCTGAAGCGCCTGTCGGCGTGGACCGGGCACATCGATCCGATCGAGATCGATGAC AGCCTGCTCGACGACGAGGCGCGCGAGACCGTCGCGGTCTTCCGCCGCATGGCCAAGCTCAAGAGCGAAGTCGGCGACGA AGTCTTCGGCACCTACATCATTTCGATGACCCACAGCGCGTCGCATGTGATGGAAGTCATGTTGCTCGCGCGCCTGGTCG GGCTCTGCGGCCACAACGGCGACGCGTGGTTCTGCCGCATCCTCGTCGCGCCGCTGTTCGAGACCGTCGACGACCTGCAG CGCAGCCAGGCGATCCTCGACGAGTTGCTGTCGAACAAGGTTTATCGTGCGCTGGTCGCGGCCGACGGCAACCGCCAGGA GGTCATGCTCGGCTATTCCGACTCGTGCAAGGACGGCGGCATCCTCGCGTCGAACTGGAACCTCTATCAGGCGCAGCTTT CGATCATCGCACTGACCCGGCGGCATGGCGTCGAGTGCCGGCTGTTCCATGGCCGCGGCGGTACGGTCGGACGCGGCGGC GGCCCGACCCACGAGGCGATCCTGTCGCAGCCGCCGGGTACGGTCAACGGCGAAATCAAGTTCACCGAGCAGGGCGAAAT GCTGTACTACAAATACAGCAACCCCGAGACGGCGAACTACGAAATCGGCATGGGTGTGACGGGTCTGCTGAAGGCCAGCG CCACCCTGCTGAAGAAATGCGAAGTCCGGTATCCGCAGGACTATCTCGACTGGATGCGCGACATCGCGGCGGCGGGCGAG ACGACTTATCGCGCGCTGATCGCGACGCCCGGCTTCATCGATTACTTCTACGAAAACACGCCGGTCACCGAGATCGGCAC GCTCAATATCGGCAGCCGGCCTTCGCATCGCAAGAAGGCCGACCGCTCGCTCGGCTCGATCCGCGCGATTCCCTGGGTGT TCGGCTGGGCGCAGTCGCGGCACACCCTGCCCGCCTGGTATGGCATCGGCAGCGCGCTCAAGTCCTTCGTCGACCAGCAT CCGGAGGGGCTTGCGCACCTGCGCGCGATGTACGCCGAGTGGCCATTCTTCCGCGGCCTGCTGTCGAACGTCCAGATGGC GCTGACCAAGGCCGACATGGAAATCGCCGAGGAATACGCGCGGTTGTGCGACCACCCGGGGACGCCCGACATCTATCGCG CGATCGCCGACGAGTTCGCCCTCACGGTCGCCGGCGTCAAGCAGGTCGCGCAGATCGAAAACCTGCTCGAGGACAACCAG CCGCTGGCCCTCTCGATCTCGCGTCGCCGCCCCTACATCGACCCGATCAACCACATCCAGGTCCGGCTACTCAAGCGCTA TCGTTCCGAGAGCGTGTGGGAATCCGAGCAGGACTCGTGGCTCACGCCGCTCAAGCGCTCGATCAACGCGATCGCAGCGG GTATGCGCAATACGGGCTGA
Upstream 100 bases:
>100_bases CCGCAACGCGCGCCGCGCGGTTGGGTGATCCCCTCGACTATGCGAAAATAGCGGGCTTTGTCGTTTTGAAGCCTGCTGTC CGGGCACCCCTCGATCCGCC
Downstream 100 bases:
>100_bases GAACGAGCCGGCGATGACGCCTCCCGCCCCCCGCCCGCCCAAGCGACGCGCACTGATCGCCTCGATCGCGATCAATGTCG TCCTCGCGCTGCTGGCGGGC
Product: phosphoenolpyruvate carboxylase
Products: NA
Alternate protein names: PEPC; PEPCase [H]
Number of amino acids: Translated: 939; Mature: 939
Protein sequence:
>939_residues MNAPQNLLTDDDLRAQVKLLGTLLGQVLLQFAGEDVFEAVETLRRGFADLQQQEDQQRRSELMAMIDAMPAGKIELVVRA FSSYFMLVNVAEESFAHRNRRRMLSHGMTLWEGSFDHTLADLKAQGLSAGTLQGLINRLHFAPVFTAHPTEARRRAVMEA MRRIFLICDQLYSPSLGVNDQRELEAQLAAEIQIMWRTDELRSAKLEVRDEVRNGLYYVRESLFEAVPKAYSFFERALRK HYGVNGDGAAPISVPSFIRFGSWIGGDRDGNPFVTADVTEWTVHTQMQAALDEYRARVRELRQTLTHSSGWCTPSAPFLE RLAEYEAEFGEQVFRGTAVQIYSREPYRRMAAMMLARLDANLSYVHQCLADVPSFTSHLAYEDAAAFLADLYLIRDSLIS HGDRIIAMQDLQALIRLVESFGFHLLQLDIRQESTIHTRTVAAVLQQIDPDFDYKGADEAERLKRLSAWTGHIDPIEIDD SLLDDEARETVAVFRRMAKLKSEVGDEVFGTYIISMTHSASHVMEVMLLARLVGLCGHNGDAWFCRILVAPLFETVDDLQ RSQAILDELLSNKVYRALVAADGNRQEVMLGYSDSCKDGGILASNWNLYQAQLSIIALTRRHGVECRLFHGRGGTVGRGG GPTHEAILSQPPGTVNGEIKFTEQGEMLYYKYSNPETANYEIGMGVTGLLKASATLLKKCEVRYPQDYLDWMRDIAAAGE TTYRALIATPGFIDYFYENTPVTEIGTLNIGSRPSHRKKADRSLGSIRAIPWVFGWAQSRHTLPAWYGIGSALKSFVDQH PEGLAHLRAMYAEWPFFRGLLSNVQMALTKADMEIAEEYARLCDHPGTPDIYRAIADEFALTVAGVKQVAQIENLLEDNQ PLALSISRRRPYIDPINHIQVRLLKRYRSESVWESEQDSWLTPLKRSINAIAAGMRNTG
Sequences:
>Translated_939_residues MNAPQNLLTDDDLRAQVKLLGTLLGQVLLQFAGEDVFEAVETLRRGFADLQQQEDQQRRSELMAMIDAMPAGKIELVVRA FSSYFMLVNVAEESFAHRNRRRMLSHGMTLWEGSFDHTLADLKAQGLSAGTLQGLINRLHFAPVFTAHPTEARRRAVMEA MRRIFLICDQLYSPSLGVNDQRELEAQLAAEIQIMWRTDELRSAKLEVRDEVRNGLYYVRESLFEAVPKAYSFFERALRK HYGVNGDGAAPISVPSFIRFGSWIGGDRDGNPFVTADVTEWTVHTQMQAALDEYRARVRELRQTLTHSSGWCTPSAPFLE RLAEYEAEFGEQVFRGTAVQIYSREPYRRMAAMMLARLDANLSYVHQCLADVPSFTSHLAYEDAAAFLADLYLIRDSLIS HGDRIIAMQDLQALIRLVESFGFHLLQLDIRQESTIHTRTVAAVLQQIDPDFDYKGADEAERLKRLSAWTGHIDPIEIDD SLLDDEARETVAVFRRMAKLKSEVGDEVFGTYIISMTHSASHVMEVMLLARLVGLCGHNGDAWFCRILVAPLFETVDDLQ RSQAILDELLSNKVYRALVAADGNRQEVMLGYSDSCKDGGILASNWNLYQAQLSIIALTRRHGVECRLFHGRGGTVGRGG GPTHEAILSQPPGTVNGEIKFTEQGEMLYYKYSNPETANYEIGMGVTGLLKASATLLKKCEVRYPQDYLDWMRDIAAAGE TTYRALIATPGFIDYFYENTPVTEIGTLNIGSRPSHRKKADRSLGSIRAIPWVFGWAQSRHTLPAWYGIGSALKSFVDQH PEGLAHLRAMYAEWPFFRGLLSNVQMALTKADMEIAEEYARLCDHPGTPDIYRAIADEFALTVAGVKQVAQIENLLEDNQ PLALSISRRRPYIDPINHIQVRLLKRYRSESVWESEQDSWLTPLKRSINAIAAGMRNTG >Mature_939_residues MNAPQNLLTDDDLRAQVKLLGTLLGQVLLQFAGEDVFEAVETLRRGFADLQQQEDQQRRSELMAMIDAMPAGKIELVVRA FSSYFMLVNVAEESFAHRNRRRMLSHGMTLWEGSFDHTLADLKAQGLSAGTLQGLINRLHFAPVFTAHPTEARRRAVMEA MRRIFLICDQLYSPSLGVNDQRELEAQLAAEIQIMWRTDELRSAKLEVRDEVRNGLYYVRESLFEAVPKAYSFFERALRK HYGVNGDGAAPISVPSFIRFGSWIGGDRDGNPFVTADVTEWTVHTQMQAALDEYRARVRELRQTLTHSSGWCTPSAPFLE RLAEYEAEFGEQVFRGTAVQIYSREPYRRMAAMMLARLDANLSYVHQCLADVPSFTSHLAYEDAAAFLADLYLIRDSLIS HGDRIIAMQDLQALIRLVESFGFHLLQLDIRQESTIHTRTVAAVLQQIDPDFDYKGADEAERLKRLSAWTGHIDPIEIDD SLLDDEARETVAVFRRMAKLKSEVGDEVFGTYIISMTHSASHVMEVMLLARLVGLCGHNGDAWFCRILVAPLFETVDDLQ RSQAILDELLSNKVYRALVAADGNRQEVMLGYSDSCKDGGILASNWNLYQAQLSIIALTRRHGVECRLFHGRGGTVGRGG GPTHEAILSQPPGTVNGEIKFTEQGEMLYYKYSNPETANYEIGMGVTGLLKASATLLKKCEVRYPQDYLDWMRDIAAAGE TTYRALIATPGFIDYFYENTPVTEIGTLNIGSRPSHRKKADRSLGSIRAIPWVFGWAQSRHTLPAWYGIGSALKSFVDQH PEGLAHLRAMYAEWPFFRGLLSNVQMALTKADMEIAEEYARLCDHPGTPDIYRAIADEFALTVAGVKQVAQIENLLEDNQ PLALSISRRRPYIDPINHIQVRLLKRYRSESVWESEQDSWLTPLKRSINAIAAGMRNTG
Specific function: Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle [H]
COG id: COG2352
COG function: function code C; Phosphoenolpyruvate carboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEPCase type 1 family [H]
Homologues:
Organism=Escherichia coli, GI1790393, Length=936, Percent_Identity=33.2264957264957, Blast_Score=392, Evalue=1e-110,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021135 - InterPro: IPR018129 - InterPro: IPR022805 - InterPro: IPR015813 [H]
Pfam domain/function: PF00311 PEPcase [H]
EC number: =4.1.1.31 [H]
Molecular weight: Translated: 105811; Mature: 105811
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: PS00781 PEPCASE_1 ; PS00393 PEPCASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAPQNLLTDDDLRAQVKLLGTLLGQVLLQFAGEDVFEAVETLRRGFADLQQQEDQQRRS CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ELMAMIDAMPAGKIELVVRAFSSYFMLVNVAEESFAHRNRRRMLSHGMTLWEGSFDHTLA HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH DLKAQGLSAGTLQGLINRLHFAPVFTAHPTEARRRAVMEAMRRIFLICDQLYSPSLGVND HHHHCCCCHHHHHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC QRELEAQLAAEIQIMWRTDELRSAKLEVRDEVRNGLYYVRESLFEAVPKAYSFFERALRK HHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HYGVNGDGAAPISVPSFIRFGSWIGGDRDGNPFVTADVTEWTVHTQMQAALDEYRARVRE HCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH LRQTLTHSSGWCTPSAPFLERLAEYEAEFGEQVFRGTAVQIYSREPYRRMAAMMLARLDA HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCC NLSYVHQCLADVPSFTSHLAYEDAAAFLADLYLIRDSLISHGDRIIAMQDLQALIRLVES CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHH FGFHLLQLDIRQESTIHTRTVAAVLQQIDPDFDYKGADEAERLKRLSAWTGHIDPIEIDD HCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCH SLLDDEARETVAVFRRMAKLKSEVGDEVFGTYIISMTHSASHVMEVMLLARLVGLCGHNG HHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC DAWFCRILVAPLFETVDDLQRSQAILDELLSNKVYRALVAADGNRQEVMLGYSDSCKDGG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC ILASNWNLYQAQLSIIALTRRHGVECRLFHGRGGTVGRGGGPTHEAILSQPPGTVNGEIK EEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCCEEE FTEQGEMLYYKYSNPETANYEIGMGVTGLLKASATLLKKCEVRYPQDYLDWMRDIAAAGE EEECCCEEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC TTYRALIATPGFIDYFYENTPVTEIGTLNIGSRPSHRKKADRSLGSIRAIPWVFGWAQSR HHHHHHHCCCCHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCC HTLPAWYGIGSALKSFVDQHPEGLAHLRAMYAEWPFFRGLLSNVQMALTKADMEIAEEYA CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH RLCDHPGTPDIYRAIADEFALTVAGVKQVAQIENLLEDNQPLALSISRRRPYIDPINHIQ HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH VRLLKRYRSESVWESEQDSWLTPLKRSINAIAAGMRNTG HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MNAPQNLLTDDDLRAQVKLLGTLLGQVLLQFAGEDVFEAVETLRRGFADLQQQEDQQRRS CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ELMAMIDAMPAGKIELVVRAFSSYFMLVNVAEESFAHRNRRRMLSHGMTLWEGSFDHTLA HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH DLKAQGLSAGTLQGLINRLHFAPVFTAHPTEARRRAVMEAMRRIFLICDQLYSPSLGVND HHHHCCCCHHHHHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC QRELEAQLAAEIQIMWRTDELRSAKLEVRDEVRNGLYYVRESLFEAVPKAYSFFERALRK HHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HYGVNGDGAAPISVPSFIRFGSWIGGDRDGNPFVTADVTEWTVHTQMQAALDEYRARVRE HCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH LRQTLTHSSGWCTPSAPFLERLAEYEAEFGEQVFRGTAVQIYSREPYRRMAAMMLARLDA HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCC NLSYVHQCLADVPSFTSHLAYEDAAAFLADLYLIRDSLISHGDRIIAMQDLQALIRLVES CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHH FGFHLLQLDIRQESTIHTRTVAAVLQQIDPDFDYKGADEAERLKRLSAWTGHIDPIEIDD HCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCH SLLDDEARETVAVFRRMAKLKSEVGDEVFGTYIISMTHSASHVMEVMLLARLVGLCGHNG HHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC DAWFCRILVAPLFETVDDLQRSQAILDELLSNKVYRALVAADGNRQEVMLGYSDSCKDGG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC ILASNWNLYQAQLSIIALTRRHGVECRLFHGRGGTVGRGGGPTHEAILSQPPGTVNGEIK EEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCCEEE FTEQGEMLYYKYSNPETANYEIGMGVTGLLKASATLLKKCEVRYPQDYLDWMRDIAAAGE EEECCCEEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC TTYRALIATPGFIDYFYENTPVTEIGTLNIGSRPSHRKKADRSLGSIRAIPWVFGWAQSR HHHHHHHCCCCHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCC HTLPAWYGIGSALKSFVDQHPEGLAHLRAMYAEWPFFRGLLSNVQMALTKADMEIAEEYA CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH RLCDHPGTPDIYRAIADEFALTVAGVKQVAQIENLLEDNQPLALSISRRRPYIDPINHIQ HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH VRLLKRYRSESVWESEQDSWLTPLKRSINAIAAGMRNTG HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA