| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is yfgM [C]
Identifier: 74316614
GI number: 74316614
Start: 624993
End: 625634
Strand: Direct
Name: yfgM [C]
Synonym: Tbd_0596
Alternate gene names: 74316614
Gene position: 624993-625634 (Clockwise)
Preceding gene: 74316613
Following gene: 74316615
Centisome position: 21.48
GC content: 66.36
Gene sequence:
>642_bases ATGGCAACCTACGACCTCGATGAACAGGAACGGCTCGACGAACTGAAAGCCTGGTGGAAACGCTGGGGCAGCGTCTCAAT GATCGGGCTGGCGGTGTTGATCGCCGCCGCGGCGGGCTGGCGCTACTGGCAAAACCGCACCGTCACGCAGAGCCTCGAGG CCGCGGCGGTCTACGACCAGCTCGCGCGCTCGGTCGCGGCGAACGAGGTCAAGGGCGCACGCGAAGCCGGCGCGATGCTC ATCGACAAATACAAGGACACGGCCTACGCTCCGCGTGCCGCGCTGCTTCTGGCCAGGCTCAACGTCGGCGCCAAGGACGC GAAGAGCGCGCAGACTCAGCTCGAGTGGGCCGCCAGCCACAGCAAGGAACCGGCGATCAGGGATTTGGCCCGCCTGCGTC TCGCCGCCGTTCAGCTTGACCAAAAGCAATACGACGTCGCGCTGAAGACGCTCGCGGCGCGTCACAGCGACGCCTTCGGC CCGCGCTTCGACGACCTCAGGGGTGACGTGCTCGTCGCACAGAACAAGCCTGCCGACGCGCGCAAGGCGTATCAGGCCGC CCTGGGCGCGATGAGCGCCGACAATCCCTACCGCAACGTGGTCGAACTGAAGCTCGACGGCGTAGGAGGAGAAGCCAAGT GA
Upstream 100 bases:
>100_bases GGCGCAGCAGGTGAGCGTGAAACCGCTGCGCGGCACGGCGGAGCAGACCCGCGTCGAACTCGCGCTCGCAATCGAATATC TGAAAAAGGCATAAGCACCC
Downstream 100 bases:
>100_bases AAATTCGTCTGCTCGTCGTCGCCGGCATCGCGCTGGCCACCTCCGGCTGCACCACGATCGGCGGCTGGTTCGGCTCCGGT CCGTCCCGCCCCGAGCCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 213; Mature: 212
Protein sequence:
>213_residues MATYDLDEQERLDELKAWWKRWGSVSMIGLAVLIAAAAGWRYWQNRTVTQSLEAAAVYDQLARSVAANEVKGAREAGAML IDKYKDTAYAPRAALLLARLNVGAKDAKSAQTQLEWAASHSKEPAIRDLARLRLAAVQLDQKQYDVALKTLAARHSDAFG PRFDDLRGDVLVAQNKPADARKAYQAALGAMSADNPYRNVVELKLDGVGGEAK
Sequences:
>Translated_213_residues MATYDLDEQERLDELKAWWKRWGSVSMIGLAVLIAAAAGWRYWQNRTVTQSLEAAAVYDQLARSVAANEVKGAREAGAML IDKYKDTAYAPRAALLLARLNVGAKDAKSAQTQLEWAASHSKEPAIRDLARLRLAAVQLDQKQYDVALKTLAARHSDAFG PRFDDLRGDVLVAQNKPADARKAYQAALGAMSADNPYRNVVELKLDGVGGEAK >Mature_212_residues ATYDLDEQERLDELKAWWKRWGSVSMIGLAVLIAAAAGWRYWQNRTVTQSLEAAAVYDQLARSVAANEVKGAREAGAMLI DKYKDTAYAPRAALLLARLNVGAKDAKSAQTQLEWAASHSKEPAIRDLARLRLAAVQLDQKQYDVALKTLAARHSDAFGP RFDDLRGDVLVAQNKPADARKAYQAALGAMSADNPYRNVVELKLDGVGGEAK
Specific function: Unknown
COG id: COG2976
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0070 family [H]
Homologues:
Organism=Escherichia coli, GI1788860, Length=188, Percent_Identity=27.1276595744681, Blast_Score=66, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018704 - InterPro: IPR011990 [H]
Pfam domain/function: PF09976 DUF2133 [H]
EC number: NA
Molecular weight: Translated: 23343; Mature: 23211
Theoretical pI: Translated: 9.46; Mature: 9.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATYDLDEQERLDELKAWWKRWGSVSMIGLAVLIAAAAGWRYWQNRTVTQSLEAAAVYDQ CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH LARSVAANEVKGAREAGAMLIDKYKDTAYAPRAALLLARLNVGAKDAKSAQTQLEWAASH HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC SKEPAIRDLARLRLAAVQLDQKQYDVALKTLAARHSDAFGPRFDDLRGDVLVAQNKPADA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHH RKAYQAALGAMSADNPYRNVVELKLDGVGGEAK HHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCC >Mature Secondary Structure ATYDLDEQERLDELKAWWKRWGSVSMIGLAVLIAAAAGWRYWQNRTVTQSLEAAAVYDQ CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH LARSVAANEVKGAREAGAMLIDKYKDTAYAPRAALLLARLNVGAKDAKSAQTQLEWAASH HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC SKEPAIRDLARLRLAAVQLDQKQYDVALKTLAARHSDAFGPRFDDLRGDVLVAQNKPADA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHH RKAYQAALGAMSADNPYRNVVELKLDGVGGEAK HHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]