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The map label for this gene is yijC [C]

Identifier: 74316500

GI number: 74316500

Start: 503804

End: 504445

Strand: Direct

Name: yijC [C]

Synonym: Tbd_0482

Alternate gene names: 74316500

Gene position: 503804-504445 (Clockwise)

Preceding gene: 74316499

Following gene: 74316501

Centisome position: 17.31

GC content: 66.2

Gene sequence:

>642_bases
ATGTATGATCAAGTCATGCATGCCTCCGCCAAGACGCCCGACCTCACGCGCCAGACGCTGCTCGAAGCGGCCTTTGCCGA
GATTCATCGCAACGGCTTCCAGGCTGCGTCGCTCGCGCAGATCCTCGGCGACACGGGGCTGACCAAGGGCGCGCTCTATC
ATCACTTCCCCGACAAGAAAGCCCTTGGCCTCGCGGTCGTCGACGAAGTGATCCGGCCGCACCTCGCGGCGATGATGTTC
GCGCCGCTCGAGGAAACCGACCGGCCGCTCGAGGCGATGCAGGCCTTGCTTGCCGCGAAGGCGGCCGAGGACGACCCCGC
GGTCGTTGCCTTGGGCTGTCCGCTCAACAACCTGATGCAGGAGATGAGCCCGGTCGACGAGGACTTCCGCCTGCGTCTGA
ATCGGGTGTTCGAAGCTTGGGTCGCGGTGCTCGCCGCAGCGCTCGGGCGCGGCCTCGGGGCAGGCCACGTGCGCGCCGAC
GTCGATCCCGCGGCCACCGCATTTTTCATCGTGTCGGCGCTGGAAGGCTGCGTCGGCATGAGCAAGAACACGCAGTCGGT
CGCGGCTTACCGCAACTGCCTCGGGCAGTTGGCCCATTTCCTCGATACGCTGAAACCCGCGACCCATGCACCCGATCGCT
GA

Upstream 100 bases:

>100_bases
ACGAATTGCTGCGCGCGACGAGCCAGCGCGAAGTGCGCTGACAGCCGGCGACGCCGAACCGACCGCACGCCAGCGGTTTG
CTTGACACATACCAACCGGT

Downstream 100 bases:

>100_bases
ATCCATCAGTGGAAGCCGCTACGCCAGTCTGGCCGCAGCGGACGCGGGGACGCCGCTGGCCGCGCTCGAGCAGTTCTATG
CCGCGTTCAACGCGCGCGAC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: ORF3 [H]

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MYDQVMHASAKTPDLTRQTLLEAAFAEIHRNGFQAASLAQILGDTGLTKGALYHHFPDKKALGLAVVDEVIRPHLAAMMF
APLEETDRPLEAMQALLAAKAAEDDPAVVALGCPLNNLMQEMSPVDEDFRLRLNRVFEAWVAVLAAALGRGLGAGHVRAD
VDPAATAFFIVSALEGCVGMSKNTQSVAAYRNCLGQLAHFLDTLKPATHAPDR

Sequences:

>Translated_213_residues
MYDQVMHASAKTPDLTRQTLLEAAFAEIHRNGFQAASLAQILGDTGLTKGALYHHFPDKKALGLAVVDEVIRPHLAAMMF
APLEETDRPLEAMQALLAAKAAEDDPAVVALGCPLNNLMQEMSPVDEDFRLRLNRVFEAWVAVLAAALGRGLGAGHVRAD
VDPAATAFFIVSALEGCVGMSKNTQSVAAYRNCLGQLAHFLDTLKPATHAPDR
>Mature_213_residues
MYDQVMHASAKTPDLTRQTLLEAAFAEIHRNGFQAASLAQILGDTGLTKGALYHHFPDKKALGLAVVDEVIRPHLAAMMF
APLEETDRPLEAMQALLAAKAAEDDPAVVALGCPLNNLMQEMSPVDEDFRLRLNRVFEAWVAVLAAALGRGLGAGHVRAD
VDPAATAFFIVSALEGCVGMSKNTQSVAAYRNCLGQLAHFLDTLKPATHAPDR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22871; Mature: 22871

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYDQVMHASAKTPDLTRQTLLEAAFAEIHRNGFQAASLAQILGDTGLTKGALYHHFPDKK
CCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHCCCCCH
ALGLAVVDEVIRPHLAAMMFAPLEETDRPLEAMQALLAAKAAEDDPAVVALGCPLNNLMQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHH
EMSPVDEDFRLRLNRVFEAWVAVLAAALGRGLGAGHVRADVDPAATAFFIVSALEGCVGM
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
SKNTQSVAAYRNCLGQLAHFLDTLKPATHAPDR
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MYDQVMHASAKTPDLTRQTLLEAAFAEIHRNGFQAASLAQILGDTGLTKGALYHHFPDKK
CCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHCCCCCH
ALGLAVVDEVIRPHLAAMMFAPLEETDRPLEAMQALLAAKAAEDDPAVVALGCPLNNLMQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHH
EMSPVDEDFRLRLNRVFEAWVAVLAAALGRGLGAGHVRADVDPAATAFFIVSALEGCVGM
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
SKNTQSVAAYRNCLGQLAHFLDTLKPATHAPDR
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1339371 [H]