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The map label for this gene is rpoZ

Identifier: 74316490

GI number: 74316490

Start: 495868

End: 496071

Strand: Reverse

Name: rpoZ

Synonym: Tbd_0472

Alternate gene names: 74316490

Gene position: 496071-495868 (Counterclockwise)

Preceding gene: 74316491

Following gene: 74316489

Centisome position: 17.05

GC content: 64.22

Gene sequence:

>204_bases
ATGGCCCGCATCACCGTCGATGATTGCATTGACAACATCCCCAACCGTTTCGAACTCACGCTGGCCGTGACCTACCGCGC
CCGCCAGCTGGCCCAGGGCTCGCAGCCCATGGTCGAATCGAAGGACAAACCCATCGTCACCGCGCTGCGCGAGATCGCGG
CAGGCAAGGTCGGTCGTGAAATCCTCAACCGGGGCCGCGCCTGA

Upstream 100 bases:

>100_bases
CCGCAGCATTCGCCTCGAAGCGCAGCGCCAGCTGAAACGCCACGCCGCCCTTTTCGGGGAATTCCGACGCATTTGAAACG
CCCGAAGCAGGAGTATCCCC

Downstream 100 bases:

>100_bases
AAACTCGCGCACCCGCAAGCCGGCGCCCGCCCCGCGTGCGCCGGCAATGACGCACGGCTTCGACACACTGCGCGAGCATC
TGGCCCACCTCGGGCCGGAA

Product: RNA polymerase, omega subunit

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MARITVDDCIDNIPNRFELTLAVTYRARQLAQGSQPMVESKDKPIVTALREIAAGKVGREILNRGRA

Sequences:

>Translated_67_residues
MARITVDDCIDNIPNRFELTLAVTYRARQLAQGSQPMVESKDKPIVTALREIAAGKVGREILNRGRA
>Mature_66_residues
ARITVDDCIDNIPNRFELTLAVTYRARQLAQGSQPMVESKDKPIVTALREIAAGKVGREILNRGRA

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_THIDA (Q3SLI5)

Other databases:

- EMBL:   CP000116
- RefSeq:   YP_314230.1
- STRING:   Q3SLI5
- GeneID:   3673105
- GenomeReviews:   CP000116_GR
- KEGG:   tbd:Tbd_0472
- NMPDR:   fig|292415.3.peg.32
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   NRFLLVM
- BioCyc:   TDEN292415:TBD_0472-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 7439; Mature: 7308

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARITVDDCIDNIPNRFELTLAVTYRARQLAQGSQPMVESKDKPIVTALREIAAGKVGRE
CCCCCHHHHHCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHH
ILNRGRA
HHHCCCC
>Mature Secondary Structure 
ARITVDDCIDNIPNRFELTLAVTYRARQLAQGSQPMVESKDKPIVTALREIAAGKVGRE
CCCCHHHHHCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHH
ILNRGRA
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA