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The map label for this gene is tdcF [C]

Identifier: 74316488

GI number: 74316488

Start: 493276

End: 493656

Strand: Reverse

Name: tdcF [C]

Synonym: Tbd_0470

Alternate gene names: 74316488

Gene position: 493656-493276 (Counterclockwise)

Preceding gene: 74316489

Following gene: 74316487

Centisome position: 16.97

GC content: 66.67

Gene sequence:

>381_bases
ATGGACAAGCGCATCATCCAGACCGCCGACGCCCCCGCCGCGATCGGTACCTACTCGCAGGCAATCCGCGTGGACAACAC
CGTGTACCTGTCGGGGCAGATCGGGCTCGATCCGTCGACCATGCAACTGGTCGACGGCATCGAAGCGCAGATCCATCAGG
TGTTCAAAAATCTCGCCGCGGTCGCCGCGGCGGCCGGCGGCTCGCTCGCCGACGTGGTGAAGCTCAACGTCTTCCTCACC
GACCTCGGAAACTTTTCGCAGGTCAACGAGATCATGGCGGCCTACTTCAAGGCCCCCTACCCGGCGCGGGCTGCGGTCGG
CGTCGCTGCCCTGCCGCGCGGCGCACTGGTCGAGGCCGACGCCGTCATGGCCCTTGCCTAG

Upstream 100 bases:

>100_bases
TGCGCATGCTGCCCGACGTCGTCCGGATCTTCCGCATCAAGGGCAAGAAAGACGGCCGCGCGGCCCCCCTCCAATAAATT
CTTCTGCTTCAGGATCCAGC

Downstream 100 bases:

>100_bases
ATCGCGCGCTTGAAGACGGCTTCGCCGTTTTCCTTTCCGGTCAGTCCGGCGCTTGCGGCCAAGCTCGCCAAGCTCGGTCT
CAAGCGCGACAGCGACCTGA

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MDKRIIQTADAPAAIGTYSQAIRVDNTVYLSGQIGLDPSTMQLVDGIEAQIHQVFKNLAAVAAAAGGSLADVVKLNVFLT
DLGNFSQVNEIMAAYFKAPYPARAAVGVAALPRGALVEADAVMALA

Sequences:

>Translated_126_residues
MDKRIIQTADAPAAIGTYSQAIRVDNTVYLSGQIGLDPSTMQLVDGIEAQIHQVFKNLAAVAAAAGGSLADVVKLNVFLT
DLGNFSQVNEIMAAYFKAPYPARAAVGVAALPRGALVEADAVMALA
>Mature_126_residues
MDKRIIQTADAPAAIGTYSQAIRVDNTVYLSGQIGLDPSTMQLVDGIEAQIHQVFKNLAAVAAAAGGSLADVVKLNVFLT
DLGNFSQVNEIMAAYFKAPYPARAAVGVAALPRGALVEADAVMALA

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=121, Percent_Identity=52.0661157024793, Blast_Score=129, Evalue=7e-31,
Organism=Escherichia coli, GI87082213, Length=123, Percent_Identity=38.2113821138211, Blast_Score=96, Evalue=5e-22,
Organism=Escherichia coli, GI87082396, Length=122, Percent_Identity=39.344262295082, Blast_Score=91, Evalue=3e-20,
Organism=Escherichia coli, GI1787245, Length=119, Percent_Identity=31.9327731092437, Blast_Score=67, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71982068, Length=120, Percent_Identity=55, Blast_Score=138, Evalue=8e-34,
Organism=Caenorhabditis elegans, GI25148896, Length=120, Percent_Identity=55, Blast_Score=138, Evalue=9e-34,
Organism=Caenorhabditis elegans, GI71982075, Length=120, Percent_Identity=55, Blast_Score=138, Evalue=9e-34,
Organism=Saccharomyces cerevisiae, GI6322138, Length=117, Percent_Identity=39.3162393162393, Blast_Score=97, Evalue=7e-22,
Organism=Saccharomyces cerevisiae, GI6320899, Length=104, Percent_Identity=42.3076923076923, Blast_Score=84, Evalue=6e-18,
Organism=Drosophila melanogaster, GI19921376, Length=121, Percent_Identity=42.1487603305785, Blast_Score=96, Evalue=8e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13061; Mature: 13061

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKRIIQTADAPAAIGTYSQAIRVDNTVYLSGQIGLDPSTMQLVDGIEAQIHQVFKNLAA
CCCCEEECCCCCCHHHHHHHHEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
VAAAAGGSLADVVKLNVFLTDLGNFSQVNEIMAAYFKAPYPARAAVGVAALPRGALVEAD
HHHHCCCCHHHHHHHHHHEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEECCC
AVMALA
CCEECC
>Mature Secondary Structure
MDKRIIQTADAPAAIGTYSQAIRVDNTVYLSGQIGLDPSTMQLVDGIEAQIHQVFKNLAA
CCCCEEECCCCCCHHHHHHHHEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
VAAAAGGSLADVVKLNVFLTDLGNFSQVNEIMAAYFKAPYPARAAVGVAALPRGALVEAD
HHHHCCCCHHHHHHHHHHEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEECCC
AVMALA
CCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2722750 [H]