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The map label for this gene is lolB

Identifier: 74316403

GI number: 74316403

Start: 413982

End: 414542

Strand: Direct

Name: lolB

Synonym: Tbd_0385

Alternate gene names: 74316403

Gene position: 413982-414542 (Clockwise)

Preceding gene: 74316402

Following gene: 74316404

Centisome position: 14.23

GC content: 73.44

Gene sequence:

>561_bases
ATGCGACGATTGGCCGTGATCGCGTCCCTCGCGTGGGCGTTGGGCGGTTGCGCGACCGTGGCACCGCCTCCGCAGGCCGC
GATTCCCGTGCCCCTCGCGGACGCCTGGACCCTGCAGGGCCGGCTCGGCGTGCAGACCGAGCGCGAGAGCCTGTCCGGCC
AGATTCGCTGGCAGCACGGCGGCGGCGTCGACCAGGTGCTCCTGACCTCGCCGCTCGGCCAGGGCGTCGCGCGCATCGTG
CGCGACCCTGAAGGCGTCAGCCTCGAACTGCCGGGACAGCCCGTTCGCCGCGCCACTGACGTCGACACGCTCACGCGCGA
CGCCCTGGGGTACGAACTGCCGGTCGCCGGGCTGGCCTGGTGGATCCAGGCGCGCCCCGACCCGCTGCGCGAGGCGGCCG
TCGCGCTCGGCGACGACGGCCGCCCGGCTCGGATCGTCCAGGACGGCTGGACCATCGACTATCTGCAATACGGCGCCGAC
GCCCGGCCTCGCAAGCTCGTCGTGAGCCGTGCGGGCCTCGAAATCCGTCTGGTCGCCGATAGCTGGCAGTCGGCGCCATG
A

Upstream 100 bases:

>100_bases
AGGGCCAGCGTGACGAAGCCGGCAAGCTCTGGCAGGCGAGCCTGCAGACCCATCCGGGCAACGAGGTGCTGCTCGAAACG
CTGCGCCGCCTCAAGCGCTG

Downstream 100 bases:

>100_bases
GCCAGGCGTTTCCCGCGCCGGCGAAGCTCAATCTTTTCCTCCACGTCGTCGGTCGCCGCGACGACGGATACCATCTGCTG
CAGAGCGTGTTTCGTCTGAT

Product: outer membrane lipoprotein LolB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MRRLAVIASLAWALGGCATVAPPPQAAIPVPLADAWTLQGRLGVQTERESLSGQIRWQHGGGVDQVLLTSPLGQGVARIV
RDPEGVSLELPGQPVRRATDVDTLTRDALGYELPVAGLAWWIQARPDPLREAAVALGDDGRPARIVQDGWTIDYLQYGAD
ARPRKLVVSRAGLEIRLVADSWQSAP

Sequences:

>Translated_186_residues
MRRLAVIASLAWALGGCATVAPPPQAAIPVPLADAWTLQGRLGVQTERESLSGQIRWQHGGGVDQVLLTSPLGQGVARIV
RDPEGVSLELPGQPVRRATDVDTLTRDALGYELPVAGLAWWIQARPDPLREAAVALGDDGRPARIVQDGWTIDYLQYGAD
ARPRKLVVSRAGLEIRLVADSWQSAP
>Mature_186_residues
MRRLAVIASLAWALGGCATVAPPPQAAIPVPLADAWTLQGRLGVQTERESLSGQIRWQHGGGVDQVLLTSPLGQGVARIV
RDPEGVSLELPGQPVRRATDVDTLTRDALGYELPVAGLAWWIQARPDPLREAAVALGDDGRPARIVQDGWTIDYLQYGAD
ARPRKLVVSRAGLEIRLVADSWQSAP

Specific function: Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the lolA protein

COG id: COG3017

COG function: function code M; Outer membrane lipoprotein involved in outer membrane biogenesis

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lolB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LOLB_THIDA (Q3SLR7)

Other databases:

- EMBL:   CP000116
- RefSeq:   YP_314143.1
- ProteinModelPortal:   Q3SLR7
- SMR:   Q3SLR7
- STRING:   Q3SLR7
- GeneID:   3671647
- GenomeReviews:   CP000116_GR
- KEGG:   tbd:Tbd_0385
- NMPDR:   fig|292415.3.peg.779
- eggNOG:   COG3017
- HOGENOM:   HBG451855
- OMA:   RIEASNG
- ProtClustDB:   CLSK766418
- BioCyc:   TDEN292415:TBD_0385-MONOMER
- HAMAP:   MF_00233
- InterPro:   IPR004565
- TIGRFAMs:   TIGR00548

Pfam domain/function: PF03550 LolB

EC number: NA

Molecular weight: Translated: 19963; Mature: 19963

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRLAVIASLAWALGGCATVAPPPQAAIPVPLADAWTLQGRLGVQTERESLSGQIRWQHG
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEECC
GGVDQVLLTSPLGQGVARIVRDPEGVSLELPGQPVRRATDVDTLTRDALGYELPVAGLAW
CCCCEEEEECCHHHHHHHHHCCCCCCEEECCCCCCHHHCCHHHHHHHHCCCCCCHHHEEE
WIQARPDPLREAAVALGDDGRPARIVQDGWTIDYLQYGADARPRKLVVSRAGLEIRLVAD
EEECCCCHHHHHHHHCCCCCCCEEEEECCCEEEHHHCCCCCCCCEEEEEECCEEEEEEEC
SWQSAP
CCCCCC
>Mature Secondary Structure
MRRLAVIASLAWALGGCATVAPPPQAAIPVPLADAWTLQGRLGVQTERESLSGQIRWQHG
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEECC
GGVDQVLLTSPLGQGVARIVRDPEGVSLELPGQPVRRATDVDTLTRDALGYELPVAGLAW
CCCCEEEEECCHHHHHHHHHCCCCCCEEECCCCCCHHHCCHHHHHHHHCCCCCCHHHEEE
WIQARPDPLREAAVALGDDGRPARIVQDGWTIDYLQYGADARPRKLVVSRAGLEIRLVAD
EEECCCCHHHHHHHHCCCCCCCEEEEECCCEEEHHHCCCCCCCCEEEEEECCEEEEEEEC
SWQSAP
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA