| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is pqqL [C]
Identifier: 74316395
GI number: 74316395
Start: 405178
End: 406539
Strand: Direct
Name: pqqL [C]
Synonym: Tbd_0377
Alternate gene names: 74316395
Gene position: 405178-406539 (Clockwise)
Preceding gene: 74316391
Following gene: 74316396
Centisome position: 13.92
GC content: 66.74
Gene sequence:
>1362_bases ATGCATAAGTTATGGGCATTCTGCCTGGCGTTGCTGGCAGGCTCGACACACGCGGCGGCATTGACCGACGTCACGCTGGA CAATGGGATGCGCGTCATCGTCCACGAGGATCATCGCGCGCCCGTCATGGTTTCGCAGGTGTGGTACCGCGCCGGCGCGG TGGACGAATTCAATGGCACGACCGGCGTTGCCCACGTGCTCGAACACATGATGTTCAAAGGCACGCCCACGGTGCCGCCC GGCGAATTCTCGAAGCGGATCGCGGCTGCGGGCGGGCGCGAGAACGCGTTCACGAGCCGCGACTATACCGCCTACTTCCA GCAGATGCAGAAGGATCGGCTGGCGTTGTCGATGGAGCTCGAGGCCGACCGCATGGCCAACCTCGTGATCAGCGACGAAC TGTTCGGCAAGGAGCTGCAGGTCGTGATGGAAGAGCGCCGGCTTCGCACCGAGGACCAGCCGCAGGCCGTGGTCTACGAG CGGCTGATGGCGACCGCCTATCAGGCGCATCCCTACCGCCGCCCTATCATCGGCTGGATGAGCGACCTCCAGAGCATGAC GGCGGCTGACGCGCGCGACTGGTACGCGCGCTGGTACGCGCCGAACAACGCCACCCTCGTGGTCGCCGGCGACGTCGACC CTGACGAGGTGGTCGCGCTGGCGAAACGCCATTTCGGCGCCTTGCCCGCACGCGCGCTTCCCGAGCGCAAGCCGCAGGGC GAGCCCGAGCAGGTCGGCATGAAGCGCATCGTCGTGAAGGCACCGGCGCAGCTGCCTTACCTGCTGATGGCCTGGCACGC GCCGACGCTCAAGGATTGGGAGCGTGACACCACGCCCTACGCGCTGCAGATTCTTGCCGGCGTTCTGTCCGGCAACGACT CGGCGCGACTGCAGAAATCACTCGTCAAGACGCAGCAGCTCGCGGTCAACGCCAGTGCGGGATACGACATGGTCGCGCGC GGCCCGGGACTCTTCATGATCGACGCGACACCCGCACCCGGCAAGTCGGTCGCCGCGCTGGAAAAGGCGATCCGCGCCGA ACTGCTGCGCATCCAGACCAAGGGCATCAGCGACGCCGAGTTGCAGCGCGTCAAGGCGCAGGTCATCGCCGCCGACGTCT ACCAGCGCGACTCGCTTTTCTACCAGGCGATGCAGCTGGGCGAATACGTGAGCACGGGCCTGCCGCCCGAGGCCCTGCTG CGGCGCGTCGAGAAGCTGCGCGCGGTCAGCGCCGAGGACGTCCAGCGCGCGGCGCAGGAGTGGTTGCGCGAAGACCGCCT GAGCGTGGCCGAACTCGACCCCCAGGCGCTCAAACCGCAGCCTGAACGCACGGCCGTGCCGGGAGTACGTCATGTCAATT AA
Upstream 100 bases:
>100_bases GTTTGACGGACTGCGGTATCTTATCATTCGTGCACGCGGCTCCGCTTCGATGCGCGAAGTTCATGAGCGCCGTTCCGGCT CATCCATCAGAGAGGAAGAC
Downstream 100 bases:
>100_bases GCGTTTCTTCGCCGTTCTCGTGCTGATCCTGGCGGCGCCGGTGCAGGCCGGGGTCGACATCCAGCATTGGCAGACCCCCG AGGGCGCGCGGGTCTTCTTC
Product: insulinase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 453; Mature: 453
Protein sequence:
>453_residues MHKLWAFCLALLAGSTHAAALTDVTLDNGMRVIVHEDHRAPVMVSQVWYRAGAVDEFNGTTGVAHVLEHMMFKGTPTVPP GEFSKRIAAAGGRENAFTSRDYTAYFQQMQKDRLALSMELEADRMANLVISDELFGKELQVVMEERRLRTEDQPQAVVYE RLMATAYQAHPYRRPIIGWMSDLQSMTAADARDWYARWYAPNNATLVVAGDVDPDEVVALAKRHFGALPARALPERKPQG EPEQVGMKRIVVKAPAQLPYLLMAWHAPTLKDWERDTTPYALQILAGVLSGNDSARLQKSLVKTQQLAVNASAGYDMVAR GPGLFMIDATPAPGKSVAALEKAIRAELLRIQTKGISDAELQRVKAQVIAADVYQRDSLFYQAMQLGEYVSTGLPPEALL RRVEKLRAVSAEDVQRAAQEWLREDRLSVAELDPQALKPQPERTAVPGVRHVN
Sequences:
>Translated_453_residues MHKLWAFCLALLAGSTHAAALTDVTLDNGMRVIVHEDHRAPVMVSQVWYRAGAVDEFNGTTGVAHVLEHMMFKGTPTVPP GEFSKRIAAAGGRENAFTSRDYTAYFQQMQKDRLALSMELEADRMANLVISDELFGKELQVVMEERRLRTEDQPQAVVYE RLMATAYQAHPYRRPIIGWMSDLQSMTAADARDWYARWYAPNNATLVVAGDVDPDEVVALAKRHFGALPARALPERKPQG EPEQVGMKRIVVKAPAQLPYLLMAWHAPTLKDWERDTTPYALQILAGVLSGNDSARLQKSLVKTQQLAVNASAGYDMVAR GPGLFMIDATPAPGKSVAALEKAIRAELLRIQTKGISDAELQRVKAQVIAADVYQRDSLFYQAMQLGEYVSTGLPPEALL RRVEKLRAVSAEDVQRAAQEWLREDRLSVAELDPQALKPQPERTAVPGVRHVN >Mature_453_residues MHKLWAFCLALLAGSTHAAALTDVTLDNGMRVIVHEDHRAPVMVSQVWYRAGAVDEFNGTTGVAHVLEHMMFKGTPTVPP GEFSKRIAAAGGRENAFTSRDYTAYFQQMQKDRLALSMELEADRMANLVISDELFGKELQVVMEERRLRTEDQPQAVVYE RLMATAYQAHPYRRPIIGWMSDLQSMTAADARDWYARWYAPNNATLVVAGDVDPDEVVALAKRHFGALPARALPERKPQG EPEQVGMKRIVVKAPAQLPYLLMAWHAPTLKDWERDTTPYALQILAGVLSGNDSARLQKSLVKTQQLAVNASAGYDMVAR GPGLFMIDATPAPGKSVAALEKAIRAELLRIQTKGISDAELQRVKAQVIAADVYQRDSLFYQAMQLGEYVSTGLPPEALL RRVEKLRAVSAEDVQRAAQEWLREDRLSVAELDPQALKPQPERTAVPGVRHVN
Specific function: Unknown
COG id: COG0612
COG function: function code R; Predicted Zn-dependent peptidases
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M16 family [H]
Homologues:
Organism=Homo sapiens, GI46593007, Length=226, Percent_Identity=30.0884955752212, Blast_Score=105, Evalue=1e-22, Organism=Homo sapiens, GI94538354, Length=203, Percent_Identity=33.0049261083744, Blast_Score=104, Evalue=2e-22, Organism=Escherichia coli, GI1787770, Length=222, Percent_Identity=33.3333333333333, Blast_Score=101, Evalue=9e-23, Organism=Caenorhabditis elegans, GI71999683, Length=204, Percent_Identity=28.921568627451, Blast_Score=91, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17553678, Length=217, Percent_Identity=28.5714285714286, Blast_Score=85, Evalue=8e-17, Organism=Saccharomyces cerevisiae, GI6323192, Length=438, Percent_Identity=24.2009132420091, Blast_Score=107, Evalue=3e-24, Organism=Saccharomyces cerevisiae, GI6323421, Length=316, Percent_Identity=22.4683544303797, Blast_Score=69, Evalue=1e-12, Organism=Drosophila melanogaster, GI21357875, Length=436, Percent_Identity=26.1467889908257, Blast_Score=118, Evalue=6e-27, Organism=Drosophila melanogaster, GI24646943, Length=436, Percent_Identity=26.1467889908257, Blast_Score=118, Evalue=6e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011249 - InterPro: IPR011237 - InterPro: IPR011765 - InterPro: IPR001431 - InterPro: IPR007863 [H]
Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]
EC number: 3.4.99.- [C]
Molecular weight: Translated: 50345; Mature: 50345
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: PS00143 INSULINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHKLWAFCLALLAGSTHAAALTDVTLDNGMRVIVHEDHRAPVMVSQVWYRAGAVDEFNGT CCHHHHHHHHHHHCCCCHHHEEEEEECCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCC TGVAHVLEHMMFKGTPTVPPGEFSKRIAAAGGRENAFTSRDYTAYFQQMQKDRLALSMEL HHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEE EADRMANLVISDELFGKELQVVMEERRLRTEDQPQAVVYERLMATAYQAHPYRRPIIGWM CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH SDLQSMTAADARDWYARWYAPNNATLVVAGDVDPDEVVALAKRHFGALPARALPERKPQG HHHHHHHHHHHHHHHHEEECCCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHCCCCCCCC EPEQVGMKRIVVKAPAQLPYLLMAWHAPTLKDWERDTTPYALQILAGVLSGNDSARLQKS CHHHHHHHHHEEECCCCCCEEHEEECCCCHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHH LVKTQQLAVNASAGYDMVARGPGLFMIDATPAPGKSVAALEKAIRAELLRIQTKGISDAE HHHHHHHEEECCCCCCEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHH LQRVKAQVIAADVYQRDSLFYQAMQLGEYVSTGLPPEALLRRVEKLRAVSAEDVQRAAQE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHH WLREDRLSVAELDPQALKPQPERTAVPGVRHVN HHHHHCCCHHHCCHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure MHKLWAFCLALLAGSTHAAALTDVTLDNGMRVIVHEDHRAPVMVSQVWYRAGAVDEFNGT CCHHHHHHHHHHHCCCCHHHEEEEEECCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCC TGVAHVLEHMMFKGTPTVPPGEFSKRIAAAGGRENAFTSRDYTAYFQQMQKDRLALSMEL HHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEE EADRMANLVISDELFGKELQVVMEERRLRTEDQPQAVVYERLMATAYQAHPYRRPIIGWM CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH SDLQSMTAADARDWYARWYAPNNATLVVAGDVDPDEVVALAKRHFGALPARALPERKPQG HHHHHHHHHHHHHHHHEEECCCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHCCCCCCCC EPEQVGMKRIVVKAPAQLPYLLMAWHAPTLKDWERDTTPYALQILAGVLSGNDSARLQKS CHHHHHHHHHEEECCCCCCEEHEEECCCCHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHH LVKTQQLAVNASAGYDMVARGPGLFMIDATPAPGKSVAALEKAIRAELLRIQTKGISDAE HHHHHHHEEECCCCCCEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHH LQRVKAQVIAADVYQRDSLFYQAMQLGEYVSTGLPPEALLRRVEKLRAVSAEDVQRAAQE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHH WLREDRLSVAELDPQALKPQPERTAVPGVRHVN HHHHHCCCHHHCCHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Zn [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]