Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is 74316359

Identifier: 74316359

GI number: 74316359

Start: 359764

End: 360684

Strand: Direct

Name: 74316359

Synonym: Tbd_0341

Alternate gene names: NA

Gene position: 359764-360684 (Clockwise)

Preceding gene: 74316358

Following gene: 74316360

Centisome position: 12.36

GC content: 63.84

Gene sequence:

>921_bases
ATGAGCGAGCAGAAACTACAATCCCAAACCGTACAAACGACTGGTCACGCCTGGGACGGCGACCTGCAGGAATACAACAA
CCCGCTGCCGGTGTGGTGGGTCTACACCTTCTACGCGACGGTGATCTTCGCCATCGTTTACTGGATCATTTATCCGTCGT
GGCCTGTGGGCAAGGACTGGATCGGCGGCGCGTCGCAGATCAGCTACGTCAATAGTGCCGGCGAGACCAAGACGCACAGC
TGGAACACCCGCGCGCTGCTGCTCGAGGATCTGAACCAGGCTGCCGCCGAGCAGAAGCCCTACTTCGACAAGGTTTCGGC
GATGTCGTACGCGCAGATCGCCAAGGATCCGGAAATGAACGGGTTCATCCTGTCCGCAGGCAAGGCCTTGTTCGCCGACA
ACTGCGCGCCCTGCCACCAGGCGGGCGGGCAGGGCGTGCCCGGATTCTTCCCCAACCTCGCCGACGACGACTGGCTCTAC
GGCGGCTCGTTCGACAAGATCCACCAGACCATCACCGGCGGTCGGCGCGGCTACATGCCCACCTTCAACGAGGTCCTGTC
GGGTGAACAGATCGACCAACTGGCCCATTTCGTCGCGAGCCTGTCCGGCACCGAGCACGACGGGGCGAAGGCGACCGCAG
GGCGAGCGCTGTTCCAGGGTGAGGCCGCCGCCTGTTATTTCTGCCACGGGACCGACGCCAAGGGGCGGACCGAAATCGGT
GCACCGAACCTGACCGACAATATCTGGCTGTGGGTCGATGCGCCGGCCGGCACCGGGGCCGCGGCCAAGGTTGGGGCGAT
CCGCAGCGTCATCGCCAACGGCGTCAACAAGGGCGTGATGCCGGCCTGGGGCGACCGTCTGACGCCCGAACAGATCAAGG
TCCTGACGGTCTACGTACACGAGTTGGGCGGAGGTCAGTAA

Upstream 100 bases:

>100_bases
TTCTGATTTACGTCTACGGTAGCCGGAAGCGGAGCAAGCGGCTCGAGTCGTACCGCGACATACCGTTCCTCGACGATCAG
GAAGGGCCGAAGGACAAGCA

Downstream 100 bases:

>100_bases
GACTCAGGCCGATGACGACCAAAGCCCCCGATCTCGGGGGCTTTTGTTTCCAGAGCAGCGAATCGCATACGCCATGCAAA
AAGGTCTAGAAGAACAGGTC

Product: cytochrome c oxidase cbb3-type subunit III

Products: ferricytochrome c; H2O

Alternate protein names: Cbb3-Type Cytochrome C Oxidase Subunit III; Cytochrome C Class I; Cytochrome-C Oxidase FixP Chain; Cytochrome C Oxidase Subunit CcoP; Cb-Type Cytochrome C Oxidase Subunit III; Cytochrome-Cbb3 Oxidase Subunit III; Cytochrome C Oxidase Subunit; Cytochrome C Oxidase; Cytochrome C Oxidase Subunit III; Cytochrome C; Cytochrome-C Oxidase Subunit III; Cytochrome C Mono- And Diheme Variant; Cytochrome C Subfamily; Cytochrome C Oxidase CcoP Subunit; FixP2 Diheme C-Type Cytochrome; Class I Cytochrome C; Cytochrome C Mono- And Diheme Variants; FixP Protein; Cytochrome Oxidase Component Cytochrome C Protein; Cytochrome C Oxidase Cbb3-Type Di-Heme Subunit III; FixP3 Cytochrome C Oxidase Membrane Anchored Subunit; Gluconate 2-Dehydrogenase; Cytochrome Cbb3 Oxidase Diheme Subunit Membrane-Bound CcoP; Cbb3-Type Cytochrome C Oxidase Subunit CcoP; Membrane-Anchored Cbb3 Cytochrome Oxidase Subunit; Cytochrome C Oxidase Transmembrane Protein; Cytochrome C Oxidase Diheme Subunit Membrane-Bound; Cytochrome C Oxidase Protein FixP Chain; Cbb3 Oxidase Subunit III; Cytochrome C Oxidase FixP Chain Protein; Diheme Cytochrome C

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MSEQKLQSQTVQTTGHAWDGDLQEYNNPLPVWWVYTFYATVIFAIVYWIIYPSWPVGKDWIGGASQISYVNSAGETKTHS
WNTRALLLEDLNQAAAEQKPYFDKVSAMSYAQIAKDPEMNGFILSAGKALFADNCAPCHQAGGQGVPGFFPNLADDDWLY
GGSFDKIHQTITGGRRGYMPTFNEVLSGEQIDQLAHFVASLSGTEHDGAKATAGRALFQGEAAACYFCHGTDAKGRTEIG
APNLTDNIWLWVDAPAGTGAAAKVGAIRSVIANGVNKGVMPAWGDRLTPEQIKVLTVYVHELGGGQ

Sequences:

>Translated_306_residues
MSEQKLQSQTVQTTGHAWDGDLQEYNNPLPVWWVYTFYATVIFAIVYWIIYPSWPVGKDWIGGASQISYVNSAGETKTHS
WNTRALLLEDLNQAAAEQKPYFDKVSAMSYAQIAKDPEMNGFILSAGKALFADNCAPCHQAGGQGVPGFFPNLADDDWLY
GGSFDKIHQTITGGRRGYMPTFNEVLSGEQIDQLAHFVASLSGTEHDGAKATAGRALFQGEAAACYFCHGTDAKGRTEIG
APNLTDNIWLWVDAPAGTGAAAKVGAIRSVIANGVNKGVMPAWGDRLTPEQIKVLTVYVHELGGGQ
>Mature_305_residues
SEQKLQSQTVQTTGHAWDGDLQEYNNPLPVWWVYTFYATVIFAIVYWIIYPSWPVGKDWIGGASQISYVNSAGETKTHSW
NTRALLLEDLNQAAAEQKPYFDKVSAMSYAQIAKDPEMNGFILSAGKALFADNCAPCHQAGGQGVPGFFPNLADDDWLYG
GSFDKIHQTITGGRRGYMPTFNEVLSGEQIDQLAHFVASLSGTEHDGAKATAGRALFQGEAAACYFCHGTDAKGRTEIGA
PNLTDNIWLWVDAPAGTGAAAKVGAIRSVIANGVNKGVMPAWGDRLTPEQIKVLTVYVHELGGGQ

Specific function: Unknown

COG id: COG2010

COG function: function code C; Cytochrome c, mono- and diheme variants

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.9.3.1

Molecular weight: Translated: 33126; Mature: 32995

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQKLQSQTVQTTGHAWDGDLQEYNNPLPVWWVYTFYATVIFAIVYWIIYPSWPVGKDW
CCHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
IGGASQISYVNSAGETKTHSWNTRALLLEDLNQAAAEQKPYFDKVSAMSYAQIAKDPEMN
CCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
GFILSAGKALFADNCAPCHQAGGQGVPGFFPNLADDDWLYGGSFDKIHQTITGGRRGYMP
CEEEECCCHHHCCCCCHHHHCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCCCCC
TFNEVLSGEQIDQLAHFVASLSGTEHDGAKATAGRALFQGEAAACYFCHGTDAKGRTEIG
CHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHCHHHCCCCCEEEEEEECCCCCCCCCCC
APNLTDNIWLWVDAPAGTGAAAKVGAIRSVIANGVNKGVMPAWGDRLTPEQIKVLTVYVH
CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHEEEEEEEE
ELGGGQ
CCCCCC
>Mature Secondary Structure 
SEQKLQSQTVQTTGHAWDGDLQEYNNPLPVWWVYTFYATVIFAIVYWIIYPSWPVGKDW
CHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
IGGASQISYVNSAGETKTHSWNTRALLLEDLNQAAAEQKPYFDKVSAMSYAQIAKDPEMN
CCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
GFILSAGKALFADNCAPCHQAGGQGVPGFFPNLADDDWLYGGSFDKIHQTITGGRRGYMP
CEEEECCCHHHCCCCCHHHHCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCCCCC
TFNEVLSGEQIDQLAHFVASLSGTEHDGAKATAGRALFQGEAAACYFCHGTDAKGRTEIG
CHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHCHHHCCCCCEEEEEEECCCCCCCCCCC
APNLTDNIWLWVDAPAGTGAAAKVGAIRSVIANGVNKGVMPAWGDRLTPEQIKVLTVYVH
CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHEEEEEEEE
ELGGGQ
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ferrocytochrome c; O2

Specific reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA