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The map label for this gene is nodJ [H]

Identifier: 74316294

GI number: 74316294

Start: 294998

End: 295783

Strand: Reverse

Name: nodJ [H]

Synonym: Tbd_0276

Alternate gene names: 74316294

Gene position: 295783-294998 (Counterclockwise)

Preceding gene: 74316295

Following gene: 74316293

Centisome position: 10.17

GC content: 64.89

Gene sequence:

>786_bases
GTGACTAGTCATCTGCGCCTTCCGCGTCTGTCGTGGCGCTTCATTCCGGTATGGCAGCGCAATTACCTGGTCTGGCGAAA
GCTCGCGATTCCGTCGATCCTCGGCAATCTCGCCGACCCGATGCTCTACATGCTCGGCCTCGGCTACGGACTCGGCCGCC
TGCTACCCGACGTCGGCGGCATGCCCTACCTGACCTTCCTCGCCGCCGGCACGGTCGCCTATAGCACGATGAACGCGGCG
ACCTTCGAGGTCTTGTACTCGGGCTTTTCGCGCATGCACGTGCAACGCACCTGGGACGCGATCATGAATGCGCCGCTCAC
GCTCGACGACGTGATGCTCGGCGAGCTGAGCTGGGCGGTGGCAAAAAGTCTGCTGTCCGGCCTCGCGATCCTCGCGGTGA
TCTGGGGCCTGGGCCTTTACGGCCACTTCTGGATGACGCTATGGATCATCCCCGTGGTCGCGCTGGTCGGCTTCTGCTTC
GGCGGCATGGGGCTGGTCATGAACGCGGTCTCGCCGAGCTACGATTTCTTCCTTTATTACTTCACGCTCGTGATCACGCC
GATGGTGCTGCTGTGCGGCGTCTTCTTCCCCGTCTCGCAACTGCCACCGGCGCTGCAGGCGGTGTCGGCTTGGCTGCCGC
TGACCCATGCGATCGACCTCGCGCGCCCGCTCGTGGCCGGCAACCGGCCGGACGACATCGTCCTGCATACGCTCGCGCTG
CTGGGCTACGGCACGGTCGGCTACGTCGTCGCGCTCGCGCTGACACGCCGGCGCCTGCTCAAATAA

Upstream 100 bases:

>100_bases
CGCGTGATCGCCGAACTCAAGCAGGCGCCCGCGCTGCGCTACCTGCACCGCCCCTCGAACCTCGAGGACGTGTTTCTCAA
GCTCACGGGGAGGGATCTGC

Downstream 100 bases:

>100_bases
CTGTCGATCGACAGACGATAGCGACGATTCCAGCACAGGCCTGACTTGCCGTCGCGGCGGCAAAGCCCGGTTTTCCGCGG
CGCACCGCGCCGGGCCGCCT

Product: ABC-2 type transporter, NodJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MTSHLRLPRLSWRFIPVWQRNYLVWRKLAIPSILGNLADPMLYMLGLGYGLGRLLPDVGGMPYLTFLAAGTVAYSTMNAA
TFEVLYSGFSRMHVQRTWDAIMNAPLTLDDVMLGELSWAVAKSLLSGLAILAVIWGLGLYGHFWMTLWIIPVVALVGFCF
GGMGLVMNAVSPSYDFFLYYFTLVITPMVLLCGVFFPVSQLPPALQAVSAWLPLTHAIDLARPLVAGNRPDDIVLHTLAL
LGYGTVGYVVALALTRRRLLK

Sequences:

>Translated_261_residues
MTSHLRLPRLSWRFIPVWQRNYLVWRKLAIPSILGNLADPMLYMLGLGYGLGRLLPDVGGMPYLTFLAAGTVAYSTMNAA
TFEVLYSGFSRMHVQRTWDAIMNAPLTLDDVMLGELSWAVAKSLLSGLAILAVIWGLGLYGHFWMTLWIIPVVALVGFCF
GGMGLVMNAVSPSYDFFLYYFTLVITPMVLLCGVFFPVSQLPPALQAVSAWLPLTHAIDLARPLVAGNRPDDIVLHTLAL
LGYGTVGYVVALALTRRRLLK
>Mature_260_residues
TSHLRLPRLSWRFIPVWQRNYLVWRKLAIPSILGNLADPMLYMLGLGYGLGRLLPDVGGMPYLTFLAAGTVAYSTMNAAT
FEVLYSGFSRMHVQRTWDAIMNAPLTLDDVMLGELSWAVAKSLLSGLAILAVIWGLGLYGHFWMTLWIIPVVALVGFCFG
GMGLVMNAVSPSYDFFLYYFTLVITPMVLLCGVFFPVSQLPPALQAVSAWLPLTHAIDLARPLVAGNRPDDIVLHTLALL
GYGTVGYVVALALTRRRLLK

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 28853; Mature: 28722

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSHLRLPRLSWRFIPVWQRNYLVWRKLAIPSILGNLADPMLYMLGLGYGLGRLLPDVGG
CCCCCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
MPYLTFLAAGTVAYSTMNAATFEVLYSGFSRMHVQRTWDAIMNAPLTLDDVMLGELSWAV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
AKSLLSGLAILAVIWGLGLYGHFWMTLWIIPVVALVGFCFGGMGLVMNAVSPSYDFFLYY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
FTLVITPMVLLCGVFFPVSQLPPALQAVSAWLPLTHAIDLARPLVAGNRPDDIVLHTLAL
HHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LGYGTVGYVVALALTRRRLLK
HHCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]