| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74316213
Identifier: 74316213
GI number: 74316213
Start: 206569
End: 209364
Strand: Reverse
Name: 74316213
Synonym: Tbd_0195
Alternate gene names: NA
Gene position: 209364-206569 (Counterclockwise)
Preceding gene: 74316214
Following gene: 74316212
Centisome position: 7.2
GC content: 67.13
Gene sequence:
>2796_bases ATGACTCGACATCCCGCTCCCCTGATTGCGTCGCTGCTGGTCCTGGCCTTTTGCGCGCCGCTCGCCGGCTGCGATCCCAC GGCCGGACTCAGCGCCCAGGAACACGTCCAGCGCGCCAAGGACTTCGAGGACAAGGGCGACCTCAAGGGCAGCGTCATCG AACTGAAGAACGCGATCCAGAAGAATCCCGACAGCGCCGAAGCCCGGCTCCTGCTGGGACAGGTCTACCTCAAGGCGGGC TTCGGCGCCGAAGCGGAAAAGGAACTTCGACAAGCCGAGCGGCTCGGCGTCGGCCGCGCCACCCTCGAGCCCCTGCTCGG GGAAGCCCTGCTGCTGATGGGCGAGTACGCGCGCGTCCTCGACGAAATCCAGCCGGACACGCAGGGACCGAAGGAGCGCC TGTCGCGCATCCTGCAACTGCGTGGCGAGGCCCTGCTGAACCAGCGGAAACTGGAGGAGGCGTGCAATCTGTTCCAGCAG TCCTACGATGCCTCGCCCGGCAACCCGCCCACCTACTGGGGCCTTTCGCGCTGCGCGCTGGCAACGGGTGACGCGGCGAA GGCGCGCGACTGGCTTGAACGCGCGCTCAAGCTCGAGCACAAGCGCGCCCGCACCTGGATTCACCTCGGCAACCTCGAAT TGGCCGGCAAGGATACGGCGAAGGCGCTCGCTGCCTATTCGAAGGCTGTGAAGATCGAACCGAACAATCTGGATGCGCTG CAGAGTCTGGTCGCGATTCACGTCAAGGCGGGAGACACCCAGCGCGCGCGCGAGTACTTGGCCGTGATCAGGAAGCTCGC GCCCAAATCGACCCGCGCACATTACCTCGAGGCGTCGATCGCCTACAGCGAGAAGAAATTCGCCGAGGCAAACGCCGCGA TTCAGGAAGCCCTGAAAGTCTCGCCCGACCATGTTCCGAGCCTGATGCTCGCCGGCATGAGCGCCCATGCGCTCGGCTCC TACCAGGAGGCGGAAACGTATTTCAAGCGCTTTCTGCTGCGGGTTCCCGGCCACGCGGAAGGGCTCAAGATGCTTGCGAC GACGCAAATCAAGTCGAAGCAATTCGACAAGGCGCTCGTCACGCTCGCCCCTTTCCTCGCCCCCGGGGTGCGGGATGCAC AGGGTCTGGCGCTGGCGGGCGAAGCGCAGATGGCCAACGGCAACCCGAGCCAGGCCGCGGCGCTCTTCGAACGCGCGCTC GCGCTCGAACCCGGCAACGTCACGATACGTACGCAGCTCGGCCTGAGTCAGCTCGCCGCCGGGAACACGCAAGACGCCAT CGACGAGTTGACCGATGCCTCACAGCATTCTTCGGGCTCCCAGGCGGACACGCTGCTTGCGGTCGCCTATCTGAGCCGCA AGGATTACGACCGCGCACTCGCCGCGCTTGCGACCCTACAGAAAAAAGGCGACGCCAGCGCGAAAATCCATCACCTGGCC GGGCAGGCCTACCTCGGCAAGAACGACAAGCTTGCCGCCCGCCGTAATTTCGAACAGGCGCTCGCCGCCGACGCGGCGTT CTTCCCCGCGGTCGCCAGCCTCGCGCAGCTCGACGTGGCCGAGAACAAGGCGGACGCGGCCCGCATGCGTCTCGAGCGCG CGCTCGCCCAGGACAAGAACCGGGTCGCCGCGATGCTCGCGCTCTCGCGGATGGCTGCCCGCAATGGTCAGGAGCAGGCC TCGATCGACTGGCTCGAGAAAGCCGCCCGCGCCGACGGCAAGGCGATACAGCCGCGCATCGAACTGGTACGGCATTACCT GGCCCGCAACGAGGGCCAGAAGGCGCTCGCCCTGGCCAACGAGGCGGTCCGCGCCAACCCCGACCACCCTGCCGCGCTCA ACCTGCTCGGCACGGTGCAACTCGCGCTCGACGACAAGGCGAGTTCGGCGAGCACCTTCAGCCGGCTTACCCGGGAGACT AGGCAGTCGCCGGAAGGCTTCGTGCGTCTCGCGCAGGTGCAGCTGGCCGACGGTAAACTCGACGAAGCGCGCCGCAACCT GCTGCACGCGCTGGAACTCGCGCCGGGACATCTCAAAAGCCAGGAGGCATTGATCAAGCTGGAACTCGCCGCCAAGCGCC CCGAGGCCGCGCTTCTCGTCGCGCGCGACATCCAGAAGGGCCACCCCGATTCCGCCGTCGGCTTCGTACGCGAAGGCGAC ATTCTGCTCGCCGAAAAACGCATCGCGCAGGCTGTGCCGGCCTACGTCCGCGCGCTGGAACATGGCGCCGGGCCGGCTGT GCTGGTCCAGTTCCACCGAGCGACCGTCCTCTCGGGGCAGAACCGTGCGGCGGCCGACCGCCGGCTCGAGGACTGGATCC GGCAGCATCCGAAGGACAGCGGCGTCGCCGCATACGCAGCCGGGTACTACCTTGTCACCGGGCAAAGCGCGCGCGCTGCG GAGACTTATCGGCAGATCCTGAAGCACGAACCACGCAACGTCATGATCCTGAACAATCTCGCCAGCCTCTATCTGCAGCA GCGAGACCCGCGCGCGCTCGAGCTCGCGACCCAGGCCAACCGACTCGCGCCGACCAACCCGGCCGTCCAGGACACCCTGG GCTGGGTTCTGGTCGAACAAGGCCAGGCCCGGCGCGGACTCGGGTACCTGCGCAAGGCGATGGCCCAGACACCGAAGAAC GCGAGCCTGCGCTACCACCACGCGGTGGCGCTCGCCCGCACCGGAGACCGCCCAGGTGCGCGCAAGCTGCTCGAGCAGCT GCTCGCCGAAACGCCGCGCTTCGAGGAACGCGCTGCGGCGGAGACCCTACTCAAGAGCCTGCCGGCTGCTTCCTGA
Upstream 100 bases:
>100_bases CGACGCGCTTTCCCCAGGAACAGGAAGCGCGTGAATTGCTCGCCCGGCTGCGCAACAAAAAGAGCTAGACTGCCGCCCAC CCCTCGCCCAAGGTAGCCCC
Downstream 100 bases:
>100_bases GCGCGCGTCGCGGGCCGAAAGCACGCGCGTCGGAAAACTTTACTCGGGCGCTTTCTTTACCCCCTAGGCCTCGCCCCAGC AGGCACACAACGCATTGTTT
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: PEP-CTERM System TPR-Repeat Lipoprotein; Tetratricopeptide TPR_2 Repeat Protein; TPR Domain-Containing Protein; TPR Domain Protein; Tetratricopeptide Repeat Domain Protein; Tetratricopeptide Repeat Family; TPR Repeat Protein; Tetratricopeptide TPR_4 Containing Protein
Number of amino acids: Translated: 931; Mature: 930
Protein sequence:
>931_residues MTRHPAPLIASLLVLAFCAPLAGCDPTAGLSAQEHVQRAKDFEDKGDLKGSVIELKNAIQKNPDSAEARLLLGQVYLKAG FGAEAEKELRQAERLGVGRATLEPLLGEALLLMGEYARVLDEIQPDTQGPKERLSRILQLRGEALLNQRKLEEACNLFQQ SYDASPGNPPTYWGLSRCALATGDAAKARDWLERALKLEHKRARTWIHLGNLELAGKDTAKALAAYSKAVKIEPNNLDAL QSLVAIHVKAGDTQRAREYLAVIRKLAPKSTRAHYLEASIAYSEKKFAEANAAIQEALKVSPDHVPSLMLAGMSAHALGS YQEAETYFKRFLLRVPGHAEGLKMLATTQIKSKQFDKALVTLAPFLAPGVRDAQGLALAGEAQMANGNPSQAAALFERAL ALEPGNVTIRTQLGLSQLAAGNTQDAIDELTDASQHSSGSQADTLLAVAYLSRKDYDRALAALATLQKKGDASAKIHHLA GQAYLGKNDKLAARRNFEQALAADAAFFPAVASLAQLDVAENKADAARMRLERALAQDKNRVAAMLALSRMAARNGQEQA SIDWLEKAARADGKAIQPRIELVRHYLARNEGQKALALANEAVRANPDHPAALNLLGTVQLALDDKASSASTFSRLTRET RQSPEGFVRLAQVQLADGKLDEARRNLLHALELAPGHLKSQEALIKLELAAKRPEAALLVARDIQKGHPDSAVGFVREGD ILLAEKRIAQAVPAYVRALEHGAGPAVLVQFHRATVLSGQNRAAADRRLEDWIRQHPKDSGVAAYAAGYYLVTGQSARAA ETYRQILKHEPRNVMILNNLASLYLQQRDPRALELATQANRLAPTNPAVQDTLGWVLVEQGQARRGLGYLRKAMAQTPKN ASLRYHHAVALARTGDRPGARKLLEQLLAETPRFEERAAAETLLKSLPAAS
Sequences:
>Translated_931_residues MTRHPAPLIASLLVLAFCAPLAGCDPTAGLSAQEHVQRAKDFEDKGDLKGSVIELKNAIQKNPDSAEARLLLGQVYLKAG FGAEAEKELRQAERLGVGRATLEPLLGEALLLMGEYARVLDEIQPDTQGPKERLSRILQLRGEALLNQRKLEEACNLFQQ SYDASPGNPPTYWGLSRCALATGDAAKARDWLERALKLEHKRARTWIHLGNLELAGKDTAKALAAYSKAVKIEPNNLDAL QSLVAIHVKAGDTQRAREYLAVIRKLAPKSTRAHYLEASIAYSEKKFAEANAAIQEALKVSPDHVPSLMLAGMSAHALGS YQEAETYFKRFLLRVPGHAEGLKMLATTQIKSKQFDKALVTLAPFLAPGVRDAQGLALAGEAQMANGNPSQAAALFERAL ALEPGNVTIRTQLGLSQLAAGNTQDAIDELTDASQHSSGSQADTLLAVAYLSRKDYDRALAALATLQKKGDASAKIHHLA GQAYLGKNDKLAARRNFEQALAADAAFFPAVASLAQLDVAENKADAARMRLERALAQDKNRVAAMLALSRMAARNGQEQA SIDWLEKAARADGKAIQPRIELVRHYLARNEGQKALALANEAVRANPDHPAALNLLGTVQLALDDKASSASTFSRLTRET RQSPEGFVRLAQVQLADGKLDEARRNLLHALELAPGHLKSQEALIKLELAAKRPEAALLVARDIQKGHPDSAVGFVREGD ILLAEKRIAQAVPAYVRALEHGAGPAVLVQFHRATVLSGQNRAAADRRLEDWIRQHPKDSGVAAYAAGYYLVTGQSARAA ETYRQILKHEPRNVMILNNLASLYLQQRDPRALELATQANRLAPTNPAVQDTLGWVLVEQGQARRGLGYLRKAMAQTPKN ASLRYHHAVALARTGDRPGARKLLEQLLAETPRFEERAAAETLLKSLPAAS >Mature_930_residues TRHPAPLIASLLVLAFCAPLAGCDPTAGLSAQEHVQRAKDFEDKGDLKGSVIELKNAIQKNPDSAEARLLLGQVYLKAGF GAEAEKELRQAERLGVGRATLEPLLGEALLLMGEYARVLDEIQPDTQGPKERLSRILQLRGEALLNQRKLEEACNLFQQS YDASPGNPPTYWGLSRCALATGDAAKARDWLERALKLEHKRARTWIHLGNLELAGKDTAKALAAYSKAVKIEPNNLDALQ SLVAIHVKAGDTQRAREYLAVIRKLAPKSTRAHYLEASIAYSEKKFAEANAAIQEALKVSPDHVPSLMLAGMSAHALGSY QEAETYFKRFLLRVPGHAEGLKMLATTQIKSKQFDKALVTLAPFLAPGVRDAQGLALAGEAQMANGNPSQAAALFERALA LEPGNVTIRTQLGLSQLAAGNTQDAIDELTDASQHSSGSQADTLLAVAYLSRKDYDRALAALATLQKKGDASAKIHHLAG QAYLGKNDKLAARRNFEQALAADAAFFPAVASLAQLDVAENKADAARMRLERALAQDKNRVAAMLALSRMAARNGQEQAS IDWLEKAARADGKAIQPRIELVRHYLARNEGQKALALANEAVRANPDHPAALNLLGTVQLALDDKASSASTFSRLTRETR QSPEGFVRLAQVQLADGKLDEARRNLLHALELAPGHLKSQEALIKLELAAKRPEAALLVARDIQKGHPDSAVGFVREGDI LLAEKRIAQAVPAYVRALEHGAGPAVLVQFHRATVLSGQNRAAADRRLEDWIRQHPKDSGVAAYAAGYYLVTGQSARAAE TYRQILKHEPRNVMILNNLASLYLQQRDPRALELATQANRLAPTNPAVQDTLGWVLVEQGQARRGLGYLRKAMAQTPKNA SLRYHHAVALARTGDRPGARKLLEQLLAETPRFEERAAAETLLKSLPAAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 100959; Mature: 100828
Theoretical pI: Translated: 9.85; Mature: 9.85
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRHPAPLIASLLVLAFCAPLAGCDPTAGLSAQEHVQRAKDFEDKGDLKGSVIELKNAIQ CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH KNPDSAEARLLLGQVYLKAGFGAEAEKELRQAERLGVGRATLEPLLGEALLLMGEYARVL CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH DEIQPDTQGPKERLSRILQLRGEALLNQRKLEEACNLFQQSYDASPGNPPTYWGLSRCAL HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH ATGDAAKARDWLERALKLEHKRARTWIHLGNLELAGKDTAKALAAYSKAVKIEPNNLDAL CCCCHHHHHHHHHHHHHHHHHHHHHEEEECCEEECCCHHHHHHHHHHHHEEECCCCHHHH QSLVAIHVKAGDTQRAREYLAVIRKLAPKSTRAHYLEASIAYSEKKFAEANAAIQEALKV HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SPDHVPSLMLAGMSAHALGSYQEAETYFKRFLLRVPGHAEGLKMLATTQIKSKQFDKALV CCCHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH TLAPFLAPGVRDAQGLALAGEAQMANGNPSQAAALFERALALEPGNVTIRTQLGLSQLAA HHHHHHCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHC GNTQDAIDELTDASQHSSGSQADTLLAVAYLSRKDYDRALAALATLQKKGDASAKIHHLA CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH GQAYLGKNDKLAARRNFEQALAADAAFFPAVASLAQLDVAENKADAARMRLERALAQDKN CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH RVAAMLALSRMAARNGQEQASIDWLEKAARADGKAIQPRIELVRHYLARNEGQKALALAN HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH EAVRANPDHPAALNLLGTVQLALDDKASSASTFSRLTRETRQSPEGFVRLAQVQLADGKL HHHCCCCCCCHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCH DEARRNLLHALELAPGHLKSQEALIKLELAAKRPEAALLVARDIQKGHPDSAVGFVREGD HHHHHHHHHHHHCCCCCCCCCHHHEEEEECCCCCCHHHHHHHHHHCCCCCCHHCEEECCC ILLAEKRIAQAVPAYVRALEHGAGPAVLVQFHRATVLSGQNRAAADRRLEDWIRQHPKDS EEEHHHHHHHHHHHHHHHHHCCCCCEEEHEEHHHHHHCCCCHHHHHHHHHHHHHHCCCCC GVAAYAAGYYLVTGQSARAAETYRQILKHEPRNVMILNNLASLYLQQRDPRALELATQAN CCEEEECCEEEEECCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHC RLAPTNPAVQDTLGWVLVEQGQARRGLGYLRKAMAQTPKNASLRYHHAVALARTGDRPGA CCCCCCCCHHHHHHHHEECCCCCCCCHHHHHHHHHCCCCCCCEEEHHHEEEEECCCCCCH RKLLEQLLAETPRFEERAAAETLLKSLPAAS HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TRHPAPLIASLLVLAFCAPLAGCDPTAGLSAQEHVQRAKDFEDKGDLKGSVIELKNAIQ CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH KNPDSAEARLLLGQVYLKAGFGAEAEKELRQAERLGVGRATLEPLLGEALLLMGEYARVL CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH DEIQPDTQGPKERLSRILQLRGEALLNQRKLEEACNLFQQSYDASPGNPPTYWGLSRCAL HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH ATGDAAKARDWLERALKLEHKRARTWIHLGNLELAGKDTAKALAAYSKAVKIEPNNLDAL CCCCHHHHHHHHHHHHHHHHHHHHHEEEECCEEECCCHHHHHHHHHHHHEEECCCCHHHH QSLVAIHVKAGDTQRAREYLAVIRKLAPKSTRAHYLEASIAYSEKKFAEANAAIQEALKV HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SPDHVPSLMLAGMSAHALGSYQEAETYFKRFLLRVPGHAEGLKMLATTQIKSKQFDKALV CCCHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH TLAPFLAPGVRDAQGLALAGEAQMANGNPSQAAALFERALALEPGNVTIRTQLGLSQLAA HHHHHHCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHC GNTQDAIDELTDASQHSSGSQADTLLAVAYLSRKDYDRALAALATLQKKGDASAKIHHLA CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH GQAYLGKNDKLAARRNFEQALAADAAFFPAVASLAQLDVAENKADAARMRLERALAQDKN CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH RVAAMLALSRMAARNGQEQASIDWLEKAARADGKAIQPRIELVRHYLARNEGQKALALAN HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH EAVRANPDHPAALNLLGTVQLALDDKASSASTFSRLTRETRQSPEGFVRLAQVQLADGKL HHHCCCCCCCHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCH DEARRNLLHALELAPGHLKSQEALIKLELAAKRPEAALLVARDIQKGHPDSAVGFVREGD HHHHHHHHHHHHCCCCCCCCCHHHEEEEECCCCCCHHHHHHHHHHCCCCCCHHCEEECCC ILLAEKRIAQAVPAYVRALEHGAGPAVLVQFHRATVLSGQNRAAADRRLEDWIRQHPKDS EEEHHHHHHHHHHHHHHHHHCCCCCEEEHEEHHHHHHCCCCHHHHHHHHHHHHHHCCCCC GVAAYAAGYYLVTGQSARAAETYRQILKHEPRNVMILNNLASLYLQQRDPRALELATQAN CCEEEECCEEEEECCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHC RLAPTNPAVQDTLGWVLVEQGQARRGLGYLRKAMAQTPKNASLRYHHAVALARTGDRPGA CCCCCCCCHHHHHHHHEECCCCCCCCHHHHHHHHHCCCCCCCEEEHHHEEEEECCCCCCH RKLLEQLLAETPRFEERAAAETLLKSLPAAS HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA