| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74316115
Identifier: 74316115
GI number: 74316115
Start: 103358
End: 104245
Strand: Reverse
Name: 74316115
Synonym: Tbd_0097
Alternate gene names: NA
Gene position: 104245-103358 (Counterclockwise)
Preceding gene: 74316120
Following gene: 74316110
Centisome position: 3.58
GC content: 68.92
Gene sequence:
>888_bases ATGAATAGACTGTCCCTGCTGCCGCCCGGATTGTATCGAATTTGCCCGCGCCTTCCGCGACGGCCTGCGCGCCGGGCTGG ACGATGGGCGAGCAAGCTGCATTCCAGCGTCGCGCTGATCCTGCTCGCGACCGCGCTCCCGGTCGAGGCCGACGTGGCCG ACACGGTCGCCAAGGTCAAGCCCGCCGTCGTCGGCGTCGGCACCTTCCAGCCGACGGGCCGGCCGCGCGCCAACCTGCTC GGCACCGGTTTCGCCGTGCTCGACGGCCGCCACGTCGTGTCGTGCGCGCACATTTTCGCCAAGCCGCTCGACACCGAGAA AAAAGCCGTCCACGCCGTTTTCATCGGCCGCGACCGGCAGATGGCGGTGCGCAGCGCCCGCCTCGTCGCGACCGACAGCG CGCGCGATCTCGCCCTGCTCCGGATCGACGGCGCCCCGCTGCCGACCCTCAAGCTCGGCGACTCGGCGCGCGCACGCGAA GGCTGGCAACTCTACTTCACCGGCTATCCGATCGGTTCCATACTCGGGCTCAACGCCTCGACCCATCGCGCCGGGCTCGC CGCGATCGTTCCGATATTCACGCCGATGCAAAGTGCCGACCAGCTCAATGCGCGCACCCTGAAGCAGGCGCGCGACGCCT ACGAGGTATTCGAGCTCGACGCGATCGCCTACCCCGGAAACAGCGGCAGCCCGGTCTGGCACCCGGAGACGGGGGAGGTG CTCGGCGTGCTCAATTCGGTCTACGTCAAAGGCGCGAAGGAAGCCGCGCTGTCGACGCCGAGCGGCATCAGCTACGCGAT TCCGGTGAGCTACGTGCACGCGCTGCTGAAGCGCGCCGCGCTCGACGCAGCCGAGCCCAACGCATCCGAGCCCAACGCAT CCGAGTAG
Upstream 100 bases:
>100_bases AAACCGACAGTGCGCGTCTTCTTGCCGAATTCCACCGCCAAGGGCAGGCCGACGTAGCCCAGCCCGACAACCGCAACAAC GCTCATGCTTGGATTCCCCT
Downstream 100 bases:
>100_bases TCCGCGCCGTGCGCGCGGCCTACATGCCCTCGGCCAGGCTGAAGCCGAAACCGAGCGACTGTTGGCGGTGGTTGTAGTCG ATCAGCGACTCGCCGTAGCC
Product: serine protease
Products: NA
Alternate protein names: Serine Protease; Peptidase; Trypsin Family Periplasmic Serine Protease; Protease Do
Number of amino acids: Translated: 295; Mature: 295
Protein sequence:
>295_residues MNRLSLLPPGLYRICPRLPRRPARRAGRWASKLHSSVALILLATALPVEADVADTVAKVKPAVVGVGTFQPTGRPRANLL GTGFAVLDGRHVVSCAHIFAKPLDTEKKAVHAVFIGRDRQMAVRSARLVATDSARDLALLRIDGAPLPTLKLGDSARARE GWQLYFTGYPIGSILGLNASTHRAGLAAIVPIFTPMQSADQLNARTLKQARDAYEVFELDAIAYPGNSGSPVWHPETGEV LGVLNSVYVKGAKEAALSTPSGISYAIPVSYVHALLKRAALDAAEPNASEPNASE
Sequences:
>Translated_295_residues MNRLSLLPPGLYRICPRLPRRPARRAGRWASKLHSSVALILLATALPVEADVADTVAKVKPAVVGVGTFQPTGRPRANLL GTGFAVLDGRHVVSCAHIFAKPLDTEKKAVHAVFIGRDRQMAVRSARLVATDSARDLALLRIDGAPLPTLKLGDSARARE GWQLYFTGYPIGSILGLNASTHRAGLAAIVPIFTPMQSADQLNARTLKQARDAYEVFELDAIAYPGNSGSPVWHPETGEV LGVLNSVYVKGAKEAALSTPSGISYAIPVSYVHALLKRAALDAAEPNASEPNASE >Mature_295_residues MNRLSLLPPGLYRICPRLPRRPARRAGRWASKLHSSVALILLATALPVEADVADTVAKVKPAVVGVGTFQPTGRPRANLL GTGFAVLDGRHVVSCAHIFAKPLDTEKKAVHAVFIGRDRQMAVRSARLVATDSARDLALLRIDGAPLPTLKLGDSARARE GWQLYFTGYPIGSILGLNASTHRAGLAAIVPIFTPMQSADQLNARTLKQARDAYEVFELDAIAYPGNSGSPVWHPETGEV LGVLNSVYVKGAKEAALSTPSGISYAIPVSYVHALLKRAALDAAEPNASEPNASE
Specific function: Unknown
COG id: COG0265
COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31405; Mature: 31405
Theoretical pI: Translated: 10.23; Mature: 10.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRLSLLPPGLYRICPRLPRRPARRAGRWASKLHSSVALILLATALPVEADVADTVAKVK CCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC PAVVGVGTFQPTGRPRANLLGTGFAVLDGRHVVSCAHIFAKPLDTEKKAVHAVFIGRDRQ CCEEEECCCCCCCCCCCHHEECCEEEECCCHHHHHHHHHHCCCCCCHHEEEEEEECCCHH MAVRSARLVATDSARDLALLRIDGAPLPTLKLGDSARAREGWQLYFTGYPIGSILGLNAS HHHHHHEEEEECCCCCEEEEEECCCCCCEEECCCCCCCCCCCEEEEECCCHHHEEECCCC THRAGLAAIVPIFTPMQSADQLNARTLKQARDAYEVFELDAIAYPGNSGSPVWHPETGEV CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCHH LGVLNSVYVKGAKEAALSTPSGISYAIPVSYVHALLKRAALDAAEPNASEPNASE HHHHHHHHHCCCHHHHCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MNRLSLLPPGLYRICPRLPRRPARRAGRWASKLHSSVALILLATALPVEADVADTVAKVK CCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC PAVVGVGTFQPTGRPRANLLGTGFAVLDGRHVVSCAHIFAKPLDTEKKAVHAVFIGRDRQ CCEEEECCCCCCCCCCCHHEECCEEEECCCHHHHHHHHHHCCCCCCHHEEEEEEECCCHH MAVRSARLVATDSARDLALLRIDGAPLPTLKLGDSARAREGWQLYFTGYPIGSILGLNAS HHHHHHEEEEECCCCCEEEEEECCCCCCEEECCCCCCCCCCCEEEEECCCHHHEEECCCC THRAGLAAIVPIFTPMQSADQLNARTLKQARDAYEVFELDAIAYPGNSGSPVWHPETGEV CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCHH LGVLNSVYVKGAKEAALSTPSGISYAIPVSYVHALLKRAALDAAEPNASEPNASE HHHHHHHHHCCCHHHHCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA