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The map label for this gene is rnk [H]

Identifier: 74316084

GI number: 74316084

Start: 69293

End: 69709

Strand: Reverse

Name: rnk [H]

Synonym: Tbd_0066

Alternate gene names: 74316084

Gene position: 69709-69293 (Counterclockwise)

Preceding gene: 74316085

Following gene: 74316083

Centisome position: 2.4

GC content: 69.06

Gene sequence:

>417_bases
ATGGAAATCACGACCCGTCCCGCCATCACCGTATCCGAGCGCGACCTCGAGCGCCTCGAAGACATGCTCGCCGGTCTGCC
CGATGACCTTCCGGGCGCCGAGGCATTGCGCGACGAACTCGACCGCGCCGAGATCCTGCGCCCGGAGGCGATGCCCGCCG
ACGTGGTGACGATGAATTCGCGCATCCGCTTCGTGGTCGAGCCGGCTGGCAAGGAAATGGAGATGACGCTCGTCTACCCG
CGCGACTTCACGGGCAGCCCGGACCAGCTCCCGGTGACGACGCCGGCCGGCATCGCCGTGCTCGGCCTCGCGGTCGGCCA
GGAGATCGAGTGGCAGGCGCCGAACGGGCAGAAGGTCGGCGCGCGCATCGTCGATCTCGCCTATCAGCCGGAGCGCGCGG
GCGACTACATGCGCTGA

Upstream 100 bases:

>100_bases
AACGTGACTGGCCGCGCGCCGCGCGCGGTGCTATAGTTTTGCGCAACACCGCCCGCGCTCCGGCCCGGGCGGTTTTCATT
TTGCACAGCAGGAGACCGCC

Downstream 100 bases:

>100_bases
GCCGTCGTGTCGATTCCTGCCGCCTACACGGCGGTCATCGTCATCTGGTCGACCACGCCGCTCGCCATTCAATGGAGCGC
GCAGGGCGCCGGCTTCAGCT

Product: GreA/GreB family elongation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MEITTRPAITVSERDLERLEDMLAGLPDDLPGAEALRDELDRAEILRPEAMPADVVTMNSRIRFVVEPAGKEMEMTLVYP
RDFTGSPDQLPVTTPAGIAVLGLAVGQEIEWQAPNGQKVGARIVDLAYQPERAGDYMR

Sequences:

>Translated_138_residues
MEITTRPAITVSERDLERLEDMLAGLPDDLPGAEALRDELDRAEILRPEAMPADVVTMNSRIRFVVEPAGKEMEMTLVYP
RDFTGSPDQLPVTTPAGIAVLGLAVGQEIEWQAPNGQKVGARIVDLAYQPERAGDYMR
>Mature_138_residues
MEITTRPAITVSERDLERLEDMLAGLPDDLPGAEALRDELDRAEILRPEAMPADVVTMNSRIRFVVEPAGKEMEMTLVYP
RDFTGSPDQLPVTTPAGIAVLGLAVGQEIEWQAPNGQKVGARIVDLAYQPERAGDYMR

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=138, Percent_Identity=46.3768115942029, Blast_Score=114, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 15206; Mature: 15206

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEITTRPAITVSERDLERLEDMLAGLPDDLPGAEALRDELDRAEILRPEAMPADVVTMNS
CCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECC
RIRFVVEPAGKEMEMTLVYPRDFTGSPDQLPVTTPAGIAVLGLAVGQEIEWQAPNGQKVG
EEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEECCCCCCCC
ARIVDLAYQPERAGDYMR
CEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MEITTRPAITVSERDLERLEDMLAGLPDDLPGAEALRDELDRAEILRPEAMPADVVTMNS
CCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECC
RIRFVVEPAGKEMEMTLVYPRDFTGSPDQLPVTTPAGIAVLGLAVGQEIEWQAPNGQKVG
EEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEECCCCCCCC
ARIVDLAYQPERAGDYMR
CEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]