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The map label for this gene is rbsR [C]

Identifier: 73539668

GI number: 73539668

Start: 2686399

End: 2687496

Strand: Reverse

Name: rbsR [C]

Synonym: Reut_B5848

Alternate gene names: 73539668

Gene position: 2687496-2686399 (Counterclockwise)

Preceding gene: 73539669

Following gene: 73539667

Centisome position: 98.58

GC content: 67.12

Gene sequence:

>1098_bases
ATGGCGTATTGCCGATTCCGATCAGCGCCGAGCGCCCACGGCGCCGCCGCCCCGCTTCCCGCCGACATGTCCGAGCGCAA
ACGCCTGACCCTCAAAGACCTCGCCGCCGAAATCAATGTGCATTACTCGACGGTGTCGCGCGTCATGAACCCGGCAACGC
GGCATCTGGTGGCAGACGACGTGGCGGCGCGCGTACTCGCGCTGGCCGACGAGCGCGGCTTCCGCCCGAACCGCATTGCG
GCAGGGCTGCGCACGCAGCGCTCGGGCCTGGTCGGCGTGGTGCTGCCTGATATCGCCAACCCTGTGTTTCCGCCGATCCT
GGCCGGCATTGAATCGGTGCTTTGCCAGCAGGGTTATGTGCCGATCGTGGTCAATGCGGGCACCGACAAGGAACGCCAGC
GCTTCGTGATCGACCAGATGGTCGGGCGCCAGGTCGAGGGCCTGCTGCTGGCCACCGCCGAGCGTGATGATCCGATCCTC
GACTATTGCCTGGCCCAGCGCATTCCCGTGGTCATGGTGAACCGCGGCGAAGACACTGGCCGCGCATCATGCGTGGTCAG
CGACAGCCTGCTGGCCATGCGGCTGACCGTGGACCATCTGATCGGCCTTGGCCACCGCCGCATCGGCCATATCGCAGGCC
CCGCCACGCTGTCGACCGGCTTCCTGCGCCGCGAAGGATTCCTGCGCGCCGTGCGGCACCACCGCCTGCGGCGGGAGCAA
TGGCAGGTCATCGAAGCCCCAAGCTATTCGCGCGAAGCGGGCCGCGAAGCCTGCGCGAAGCTGCTGGCCGAGTTTCCCGG
CATGACGGCCATCGCCGCCGGTAACGACCTGATCGCCATGGGCTGCTATGACTACCTGCGCGAGCGCGGTCTGCGCTGCC
CGGAAGATATCTCGGTGGTCGGCCACAACGACATGCCGTTCGTCGATGCGCTGACACCACCGCTGACCACCGTGCGCATT
GCCGTGCACGAGATGGGCGAAGAAGCCGCAAAGCTGCTGCTCAGGAAGATCAGCGAGCCCGACGCCGATGCCGTGACGGT
CGAGCTCAAACCGGAACTGATTGTGCGCGGATCGACGGCGGCGCCGGCGTCCGCCTGA

Upstream 100 bases:

>100_bases
CGCCGGTGGTGAAACAGTCGGGCGTTCAGGGCGGCCAGTAACGGGGCGGACAGCGCCGCACGGGGCTCGGGTGGCGGCCG
CCCGGGTCCCTTGCCTTAGA

Downstream 100 bases:

>100_bases
AACTGGCTGCCACCCCCGCCAGAAAAACGCGCGGATTCGAAGTCCTTCTATAGTTTCCGTGGCTGCGGAACCCTAGTCTA
CGACCCGAAGATCCGCAGCA

Product: LacI family transcription regulator

Products: NA

Alternate protein names: ORF-S1 [H]

Number of amino acids: Translated: 365; Mature: 364

Protein sequence:

>365_residues
MAYCRFRSAPSAHGAAAPLPADMSERKRLTLKDLAAEINVHYSTVSRVMNPATRHLVADDVAARVLALADERGFRPNRIA
AGLRTQRSGLVGVVLPDIANPVFPPILAGIESVLCQQGYVPIVVNAGTDKERQRFVIDQMVGRQVEGLLLATAERDDPIL
DYCLAQRIPVVMVNRGEDTGRASCVVSDSLLAMRLTVDHLIGLGHRRIGHIAGPATLSTGFLRREGFLRAVRHHRLRREQ
WQVIEAPSYSREAGREACAKLLAEFPGMTAIAAGNDLIAMGCYDYLRERGLRCPEDISVVGHNDMPFVDALTPPLTTVRI
AVHEMGEEAAKLLLRKISEPDADAVTVELKPELIVRGSTAAPASA

Sequences:

>Translated_365_residues
MAYCRFRSAPSAHGAAAPLPADMSERKRLTLKDLAAEINVHYSTVSRVMNPATRHLVADDVAARVLALADERGFRPNRIA
AGLRTQRSGLVGVVLPDIANPVFPPILAGIESVLCQQGYVPIVVNAGTDKERQRFVIDQMVGRQVEGLLLATAERDDPIL
DYCLAQRIPVVMVNRGEDTGRASCVVSDSLLAMRLTVDHLIGLGHRRIGHIAGPATLSTGFLRREGFLRAVRHHRLRREQ
WQVIEAPSYSREAGREACAKLLAEFPGMTAIAAGNDLIAMGCYDYLRERGLRCPEDISVVGHNDMPFVDALTPPLTTVRI
AVHEMGEEAAKLLLRKISEPDADAVTVELKPELIVRGSTAAPASA
>Mature_364_residues
AYCRFRSAPSAHGAAAPLPADMSERKRLTLKDLAAEINVHYSTVSRVMNPATRHLVADDVAARVLALADERGFRPNRIAA
GLRTQRSGLVGVVLPDIANPVFPPILAGIESVLCQQGYVPIVVNAGTDKERQRFVIDQMVGRQVEGLLLATAERDDPILD
YCLAQRIPVVMVNRGEDTGRASCVVSDSLLAMRLTVDHLIGLGHRRIGHIAGPATLSTGFLRREGFLRAVRHHRLRREQW
QVIEAPSYSREAGREACAKLLAEFPGMTAIAAGNDLIAMGCYDYLRERGLRCPEDISVVGHNDMPFVDALTPPLTTVRIA
VHEMGEEAAKLLLRKISEPDADAVTVELKPELIVRGSTAAPASA

Specific function: Putative sugar-binding regulatory protein for the alpha- amylase gene [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=333, Percent_Identity=30.03003003003, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1787948, Length=333, Percent_Identity=30.6306306306306, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1790369, Length=335, Percent_Identity=31.044776119403, Blast_Score=148, Evalue=6e-37,
Organism=Escherichia coli, GI1788474, Length=310, Percent_Identity=29.0322580645161, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1786540, Length=342, Percent_Identity=30.9941520467836, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1789202, Length=334, Percent_Identity=26.6467065868263, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787906, Length=344, Percent_Identity=27.0348837209302, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI48994940, Length=342, Percent_Identity=27.1929824561404, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1790715, Length=337, Percent_Identity=26.4094955489614, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1786268, Length=314, Percent_Identity=24.203821656051, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1787580, Length=328, Percent_Identity=24.390243902439, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789068, Length=306, Percent_Identity=25.8169934640523, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1790689, Length=320, Percent_Identity=26.875, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789456, Length=341, Percent_Identity=26.6862170087977, Blast_Score=85, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 39709; Mature: 39578

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYCRFRSAPSAHGAAAPLPADMSERKRLTLKDLAAEINVHYSTVSRVMNPATRHLVADD
CCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
VAARVLALADERGFRPNRIAAGLRTQRSGLVGVVLPDIANPVFPPILAGIESVLCQQGYV
HHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCHHCCCHHHHHHHHHHHHHHCCCCE
PIVVNAGTDKERQRFVIDQMVGRQVEGLLLATAERDDPILDYCLAQRIPVVMVNRGEDTG
EEEEECCCCHHHHHHHHHHHHCHHHCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCC
RASCVVSDSLLAMRLTVDHLIGLGHRRIGHIAGPATLSTGFLRREGFLRAVRHHRLRREQ
CEEEEECCCHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
WQVIEAPSYSREAGREACAKLLAEFPGMTAIAAGNDLIAMGCYDYLRERGLRCPEDISVV
HHEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEHHHHHHHHHCCCCCCCCCEEE
GHNDMPFVDALTPPLTTVRIAVHEMGEEAAKLLLRKISEPDADAVTVELKPELIVRGSTA
CCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEECCCC
APASA
CCCCC
>Mature Secondary Structure 
AYCRFRSAPSAHGAAAPLPADMSERKRLTLKDLAAEINVHYSTVSRVMNPATRHLVADD
CCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
VAARVLALADERGFRPNRIAAGLRTQRSGLVGVVLPDIANPVFPPILAGIESVLCQQGYV
HHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCHHCCCHHHHHHHHHHHHHHCCCCE
PIVVNAGTDKERQRFVIDQMVGRQVEGLLLATAERDDPILDYCLAQRIPVVMVNRGEDTG
EEEEECCCCHHHHHHHHHHHHCHHHCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCC
RASCVVSDSLLAMRLTVDHLIGLGHRRIGHIAGPATLSTGFLRREGFLRAVRHHRLRREQ
CEEEEECCCHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
WQVIEAPSYSREAGREACAKLLAEFPGMTAIAAGNDLIAMGCYDYLRERGLRCPEDISVV
HHEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEHHHHHHHHHCCCCCCCCCEEE
GHNDMPFVDALTPPLTTVRIAVHEMGEEAAKLLLRKISEPDADAVTVELKPELIVRGSTA
CCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEECCCC
APASA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3500166 [H]