| Definition | Ralstonia eutropha JMP134 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_007348 |
| Length | 2,726,152 |
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The map label for this gene is lcfB [H]
Identifier: 73539398
GI number: 73539398
Start: 2393091
End: 2394650
Strand: Reverse
Name: lcfB [H]
Synonym: Reut_B5576
Alternate gene names: 73539398
Gene position: 2394650-2393091 (Counterclockwise)
Preceding gene: 73539399
Following gene: 73539395
Centisome position: 87.84
GC content: 66.54
Gene sequence:
>1560_bases ATGCAGTCAGAGCAGCAGCGCGCCCTGCGCAATACCATCCCTGACGCCGTCGGCCGCGCCGTCCGGCGCGATCCCGACAA GACTGCCATCCGCTTCGGCGCCCGTAGCTGGACCTTCCGGCAACTGGACGAAGCCGCGGCATGCGTGGCGGGTGCGCTCG CGCAGTGGGGCCTGCGGCCCGGCGACCGCGTCGCGGCCTTCGGCAAAAACTCCGATGCCTACGTGCTGCTGTGGCTCGCG TGCTTGCGATCCGGCCTGATCCACGTACCGGTGAACTTCTCGATGACGCGAAGCGAAGCCGAGTACATCGTCACGCAATC CGGTGCCAGCGCGATCTTTGCCGATCCTGCACTGGCCGAACGCGTGCAAGGGCTACCCTGCCGGGTGAGCGGCACGCTGC ATGGTGGCGGTGATCACGACATCCTGATGGCAGCCGCGCAAGGGCCCGCGGCACCGGTGCTCGCGGAACTGGCCGACGAC ACGCCGGCGCAGATTCTGTACACGTCCGGCACCACTTCCGCACCGAAGGGCGCCGTGCTTACGCATCGCGCGCTGCTGGC CGAGTACGTGAGCACCATCGCGGCATGCGACGTGCGTGCATCGGATTATTCGCTCGCAGCGCTGCCGCTCTACCACTCGG CGCAGATGCACGTATTCCTGATGCCGCTGCTGCTGAGCGGTGGCACCACGCTCATCGCCGACAGCCCCGAGGCCGGCTTC TGCCTGCGCACCATCCACGACGAAGAGATCACGAGCTTCTTTGCGCCGCCCACGGTGTGGATCGCGCTGCTGCGGCATGC CGATTTCGATCCCGCGCGGCTCGGCACGCTGACCAAGGCGTACTACGGCGCCTCGATCATGCCGGTGCCGGTGCTGCTCG AACTGCAGGCGAAGCTGCCGGCGCTGCGCTTCTACAACTGCTACGGCCAGAGCGAGATCGGCCCGCTCGCCACGGTGCTC GGTCCCGACGAGCATGCGGAGCGCCCGGCCTCTGCGGGACGGCCCGTGCTCAATGTGGAAACCCGCATCGTCGACGAGAA GATGAACGACGTCGCGCCCGGCACGCTTGGTGAAATCGTGCACCGCTCGCCTCAGTTGCTGACCGAATACTGGGACAAGC CGGAACAGACCGCCGAGGCATTCGCCGGTGGCTGGTTCCATTCCGGCGACCTCGGCTACATGGATGTCGCGGGCTACCTG TATGTGGTGGACCGCATCAAGGACGTGATCAACTCGGGCGGCGTGCTGGTGTCGAGCCGCGAAGTCGAGGAGTGCCTGTA CACCCATCCCGCTGTGGCCGAGGTGGCGGTGTTCGCGCTGTCGCACCCGAAGTGGGTGGAAGCCGTGACCGCTTGCGTGG TGCTCAAGCGCGATACTGCAGCCACCGAAGAAACACTGGTCGCGCATGCACGCGATGCGCTGGCACCGTTCAAGGTGCCC AAGCGCGTGGTGTTCGTGGCCGACCTGCCGCGCAATACGGCAGGCAAGCTGCTCAAGCGGAAGCTGCGTGAAGACTATGC GGCGCTGTTCAGCGACGAGACAGGCGGAACGGGACGATAG
Upstream 100 bases:
>100_bases GCCGGAGGGGCCCGCCTTGCCACCGGCGTGCGGCACGCCGTATGCTGAGCTGTCGAGCTTCAAGACTTGCTGGATCCAAA CCACGATAACGGAGACCACC
Downstream 100 bases:
>100_bases CGGGACAGTCTGCGGGCAAGGTGTGTCTGGCGGGGCCACTCGCCAGATACGGCGCCCGCCGCATTGACGAGCGCCTGTCT CGGCCTCAATACGGCACGGC
Product: acyl-CoA synthetase
Products: NA
Alternate protein names: Long-chain acyl-CoA synthetase [H]
Number of amino acids: Translated: 519; Mature: 519
Protein sequence:
>519_residues MQSEQQRALRNTIPDAVGRAVRRDPDKTAIRFGARSWTFRQLDEAAACVAGALAQWGLRPGDRVAAFGKNSDAYVLLWLA CLRSGLIHVPVNFSMTRSEAEYIVTQSGASAIFADPALAERVQGLPCRVSGTLHGGGDHDILMAAAQGPAAPVLAELADD TPAQILYTSGTTSAPKGAVLTHRALLAEYVSTIAACDVRASDYSLAALPLYHSAQMHVFLMPLLLSGGTTLIADSPEAGF CLRTIHDEEITSFFAPPTVWIALLRHADFDPARLGTLTKAYYGASIMPVPVLLELQAKLPALRFYNCYGQSEIGPLATVL GPDEHAERPASAGRPVLNVETRIVDEKMNDVAPGTLGEIVHRSPQLLTEYWDKPEQTAEAFAGGWFHSGDLGYMDVAGYL YVVDRIKDVINSGGVLVSSREVEECLYTHPAVAEVAVFALSHPKWVEAVTACVVLKRDTAATEETLVAHARDALAPFKVP KRVVFVADLPRNTAGKLLKRKLREDYAALFSDETGGTGR
Sequences:
>Translated_519_residues MQSEQQRALRNTIPDAVGRAVRRDPDKTAIRFGARSWTFRQLDEAAACVAGALAQWGLRPGDRVAAFGKNSDAYVLLWLA CLRSGLIHVPVNFSMTRSEAEYIVTQSGASAIFADPALAERVQGLPCRVSGTLHGGGDHDILMAAAQGPAAPVLAELADD TPAQILYTSGTTSAPKGAVLTHRALLAEYVSTIAACDVRASDYSLAALPLYHSAQMHVFLMPLLLSGGTTLIADSPEAGF CLRTIHDEEITSFFAPPTVWIALLRHADFDPARLGTLTKAYYGASIMPVPVLLELQAKLPALRFYNCYGQSEIGPLATVL GPDEHAERPASAGRPVLNVETRIVDEKMNDVAPGTLGEIVHRSPQLLTEYWDKPEQTAEAFAGGWFHSGDLGYMDVAGYL YVVDRIKDVINSGGVLVSSREVEECLYTHPAVAEVAVFALSHPKWVEAVTACVVLKRDTAATEETLVAHARDALAPFKVP KRVVFVADLPRNTAGKLLKRKLREDYAALFSDETGGTGR >Mature_519_residues MQSEQQRALRNTIPDAVGRAVRRDPDKTAIRFGARSWTFRQLDEAAACVAGALAQWGLRPGDRVAAFGKNSDAYVLLWLA CLRSGLIHVPVNFSMTRSEAEYIVTQSGASAIFADPALAERVQGLPCRVSGTLHGGGDHDILMAAAQGPAAPVLAELADD TPAQILYTSGTTSAPKGAVLTHRALLAEYVSTIAACDVRASDYSLAALPLYHSAQMHVFLMPLLLSGGTTLIADSPEAGF CLRTIHDEEITSFFAPPTVWIALLRHADFDPARLGTLTKAYYGASIMPVPVLLELQAKLPALRFYNCYGQSEIGPLATVL GPDEHAERPASAGRPVLNVETRIVDEKMNDVAPGTLGEIVHRSPQLLTEYWDKPEQTAEAFAGGWFHSGDLGYMDVAGYL YVVDRIKDVINSGGVLVSSREVEECLYTHPAVAEVAVFALSHPKWVEAVTACVVLKRDTAATEETLVAHARDALAPFKVP KRVVFVADLPRNTAGKLLKRKLREDYAALFSDETGGTGR
Specific function: Involved in the degradation of long-chain fatty acids [H]
COG id: COG0318
COG function: function code IQ; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
Gene ontology:
Cell location: Partially Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI156151445, Length=513, Percent_Identity=29.6296296296296, Blast_Score=185, Evalue=7e-47, Organism=Homo sapiens, GI187761345, Length=530, Percent_Identity=28.6792452830189, Blast_Score=175, Evalue=7e-44, Organism=Homo sapiens, GI187761343, Length=530, Percent_Identity=28.6792452830189, Blast_Score=175, Evalue=7e-44, Organism=Homo sapiens, GI115511026, Length=497, Percent_Identity=27.9678068410463, Blast_Score=160, Evalue=3e-39, Organism=Homo sapiens, GI42544132, Length=496, Percent_Identity=29.4354838709677, Blast_Score=158, Evalue=1e-38, Organism=Homo sapiens, GI122937307, Length=502, Percent_Identity=28.0876494023904, Blast_Score=154, Evalue=3e-37, Organism=Homo sapiens, GI58082049, Length=492, Percent_Identity=28.0487804878049, Blast_Score=151, Evalue=2e-36, Organism=Homo sapiens, GI157311624, Length=497, Percent_Identity=27.7665995975855, Blast_Score=149, Evalue=5e-36, Organism=Homo sapiens, GI157311622, Length=497, Percent_Identity=27.7665995975855, Blast_Score=149, Evalue=5e-36, Organism=Homo sapiens, GI38505220, Length=504, Percent_Identity=27.1825396825397, Blast_Score=147, Evalue=3e-35, Organism=Homo sapiens, GI13375727, Length=568, Percent_Identity=26.5845070422535, Blast_Score=127, Evalue=2e-29, Organism=Homo sapiens, GI28416953, Length=541, Percent_Identity=25.6931608133087, Blast_Score=124, Evalue=2e-28, Organism=Homo sapiens, GI40807357, Length=553, Percent_Identity=25.8589511754069, Blast_Score=108, Evalue=8e-24, Organism=Homo sapiens, GI8923896, Length=538, Percent_Identity=25.092936802974, Blast_Score=97, Evalue=4e-20, Organism=Homo sapiens, GI38524616, Length=553, Percent_Identity=24.5931283905967, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI227499619, Length=527, Percent_Identity=24.4781783681214, Blast_Score=94, Evalue=4e-19, Organism=Homo sapiens, GI253970489, Length=551, Percent_Identity=24.5009074410163, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI195947378, Length=398, Percent_Identity=24.1206030150754, Blast_Score=88, Evalue=2e-17, Organism=Homo sapiens, GI13325057, Length=547, Percent_Identity=24.8628884826325, Blast_Score=83, Evalue=7e-16, Organism=Escherichia coli, GI1788107, Length=536, Percent_Identity=31.3432835820896, Blast_Score=217, Evalue=1e-57, Organism=Escherichia coli, GI145693145, Length=515, Percent_Identity=30.4854368932039, Blast_Score=210, Evalue=2e-55, Organism=Escherichia coli, GI221142682, Length=489, Percent_Identity=27.19836400818, Blast_Score=153, Evalue=2e-38, Organism=Escherichia coli, GI1786810, Length=501, Percent_Identity=27.7445109780439, Blast_Score=145, Evalue=6e-36, Organism=Escherichia coli, GI1790505, Length=563, Percent_Identity=23.9786856127886, Blast_Score=101, Evalue=1e-22, Organism=Escherichia coli, GI1786529, Length=560, Percent_Identity=25, Blast_Score=99, Evalue=7e-22, Organism=Escherichia coli, GI1789201, Length=363, Percent_Identity=27.2727272727273, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1788595, Length=337, Percent_Identity=24.6290801186944, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI1786801, Length=447, Percent_Identity=22.3713646532438, Blast_Score=69, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17558820, Length=488, Percent_Identity=31.1475409836066, Blast_Score=210, Evalue=2e-54, Organism=Caenorhabditis elegans, GI32563687, Length=512, Percent_Identity=30.078125, Blast_Score=206, Evalue=2e-53, Organism=Caenorhabditis elegans, GI71994694, Length=544, Percent_Identity=25.9191176470588, Blast_Score=170, Evalue=2e-42, Organism=Caenorhabditis elegans, GI71994690, Length=544, Percent_Identity=25.9191176470588, Blast_Score=170, Evalue=2e-42, Organism=Caenorhabditis elegans, GI71994703, Length=544, Percent_Identity=25.9191176470588, Blast_Score=170, Evalue=2e-42, Organism=Caenorhabditis elegans, GI17559526, Length=540, Percent_Identity=25.9259259259259, Blast_Score=143, Evalue=3e-34, Organism=Caenorhabditis elegans, GI17560308, Length=544, Percent_Identity=26.2867647058824, Blast_Score=142, Evalue=4e-34, Organism=Caenorhabditis elegans, GI17531443, Length=526, Percent_Identity=24.5247148288973, Blast_Score=139, Evalue=2e-33, Organism=Caenorhabditis elegans, GI71996755, Length=511, Percent_Identity=25.8317025440313, Blast_Score=130, Evalue=2e-30, Organism=Caenorhabditis elegans, GI17560140, Length=491, Percent_Identity=25.2545824847251, Blast_Score=129, Evalue=3e-30, Organism=Caenorhabditis elegans, GI17557194, Length=516, Percent_Identity=25.1937984496124, Blast_Score=126, Evalue=2e-29, Organism=Caenorhabditis elegans, GI17538037, Length=499, Percent_Identity=23.4468937875752, Blast_Score=117, Evalue=1e-26, Organism=Caenorhabditis elegans, GI71985884, Length=432, Percent_Identity=25.2314814814815, Blast_Score=114, Evalue=1e-25, Organism=Caenorhabditis elegans, GI71982997, Length=390, Percent_Identity=25.1282051282051, Blast_Score=65, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71983001, Length=384, Percent_Identity=25, Blast_Score=65, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6319699, Length=351, Percent_Identity=27.9202279202279, Blast_Score=138, Evalue=2e-33, Organism=Saccharomyces cerevisiae, GI6323182, Length=568, Percent_Identity=26.5845070422535, Blast_Score=119, Evalue=1e-27, Organism=Saccharomyces cerevisiae, GI6319264, Length=567, Percent_Identity=25.7495590828924, Blast_Score=111, Evalue=3e-25, Organism=Drosophila melanogaster, GI24581924, Length=516, Percent_Identity=25.1937984496124, Blast_Score=148, Evalue=7e-36, Organism=Drosophila melanogaster, GI21356441, Length=474, Percent_Identity=25.7383966244726, Blast_Score=146, Evalue=4e-35, Organism=Drosophila melanogaster, GI18859661, Length=498, Percent_Identity=27.3092369477912, Blast_Score=142, Evalue=4e-34, Organism=Drosophila melanogaster, GI24648255, Length=509, Percent_Identity=26.3261296660118, Blast_Score=141, Evalue=9e-34, Organism=Drosophila melanogaster, GI24648253, Length=505, Percent_Identity=25.7425742574257, Blast_Score=141, Evalue=1e-33, Organism=Drosophila melanogaster, GI19922652, Length=492, Percent_Identity=27.8455284552846, Blast_Score=136, Evalue=4e-32, Organism=Drosophila melanogaster, GI24648260, Length=469, Percent_Identity=25.5863539445629, Blast_Score=136, Evalue=5e-32, Organism=Drosophila melanogaster, GI21358303, Length=454, Percent_Identity=26.431718061674, Blast_Score=135, Evalue=7e-32, Organism=Drosophila melanogaster, GI21355181, Length=478, Percent_Identity=26.5690376569038, Blast_Score=131, Evalue=1e-30, Organism=Drosophila melanogaster, GI24653035, Length=489, Percent_Identity=26.5848670756646, Blast_Score=130, Evalue=2e-30, Organism=Drosophila melanogaster, GI161076582, Length=495, Percent_Identity=27.2727272727273, Blast_Score=126, Evalue=4e-29, Organism=Drosophila melanogaster, GI281365686, Length=493, Percent_Identity=23.1237322515213, Blast_Score=121, Evalue=1e-27, Organism=Drosophila melanogaster, GI21356947, Length=505, Percent_Identity=25.9405940594059, Blast_Score=121, Evalue=1e-27, Organism=Drosophila melanogaster, GI24648257, Length=513, Percent_Identity=25.7309941520468, Blast_Score=118, Evalue=1e-26, Organism=Drosophila melanogaster, GI24667955, Length=557, Percent_Identity=24.7755834829443, Blast_Score=111, Evalue=1e-24, Organism=Drosophila melanogaster, GI62472339, Length=529, Percent_Identity=24.952741020794, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI24656500, Length=494, Percent_Identity=26.7206477732794, Blast_Score=110, Evalue=3e-24, Organism=Drosophila melanogaster, GI21355225, Length=403, Percent_Identity=27.5434243176179, Blast_Score=99, Evalue=8e-21, Organism=Drosophila melanogaster, GI24667959, Length=364, Percent_Identity=25.2747252747253, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI20130357, Length=462, Percent_Identity=23.1601731601732, Blast_Score=95, Evalue=1e-19, Organism=Drosophila melanogaster, GI45550496, Length=505, Percent_Identity=25.1485148514851, Blast_Score=89, Evalue=8e-18, Organism=Drosophila melanogaster, GI45552801, Length=503, Percent_Identity=25.2485089463221, Blast_Score=88, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020459 - InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.3 [H]
Molecular weight: Translated: 55958; Mature: 55958
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSEQQRALRNTIPDAVGRAVRRDPDKTAIRFGARSWTFRQLDEAAACVAGALAQWGLRP CCCHHHHHHHHCCHHHHHHHHHCCCCHHHHEECCCCCHHHHHHHHHHHHHHHHHHCCCCC GDRVAAFGKNSDAYVLLWLACLRSGLIHVPVNFSMTRSEAEYIVTQSGASAIFADPALAE CCCEEEECCCCCHHHHHHHHHHHCCEEEECCCCEEECCCCCEEEEECCCCEEEECHHHHH RVQGLPCRVSGTLHGGGDHDILMAAAQGPAAPVLAELADDTPAQILYTSGTTSAPKGAVL HHCCCCEEEEEEECCCCCCCEEEEECCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHH THRALLAEYVSTIAACDVRASDYSLAALPLYHSAQMHVFLMPLLLSGGTTLIADSPEAGF HHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCE CLRTIHDEEITSFFAPPTVWIALLRHADFDPARLGTLTKAYYGASIMPVPVLLELQAKLP EEEECCHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHEEHHHCCC ALRFYNCYGQSEIGPLATVLGPDEHAERPASAGRPVLNVETRIVDEKMNDVAPGTLGEIV CEEEEECCCCCCCCCCCEECCCCHHHCCCHHCCCCEEEEHHHHHHHHHHCCCCCHHHHHH HRSPQLLTEYWDKPEQTAEAFAGGWFHSGDLGYMDVAGYLYVVDRIKDVINSGGVLVSSR HCCHHHHHHHCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECH EVEECLYTHPAVAEVAVFALSHPKWVEAVTACVVLKRDTAATEETLVAHARDALAPFKVP HHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCCC KRVVFVADLPRNTAGKLLKRKLREDYAALFSDETGGTGR CEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MQSEQQRALRNTIPDAVGRAVRRDPDKTAIRFGARSWTFRQLDEAAACVAGALAQWGLRP CCCHHHHHHHHCCHHHHHHHHHCCCCHHHHEECCCCCHHHHHHHHHHHHHHHHHHCCCCC GDRVAAFGKNSDAYVLLWLACLRSGLIHVPVNFSMTRSEAEYIVTQSGASAIFADPALAE CCCEEEECCCCCHHHHHHHHHHHCCEEEECCCCEEECCCCCEEEEECCCCEEEECHHHHH RVQGLPCRVSGTLHGGGDHDILMAAAQGPAAPVLAELADDTPAQILYTSGTTSAPKGAVL HHCCCCEEEEEEECCCCCCCEEEEECCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHH THRALLAEYVSTIAACDVRASDYSLAALPLYHSAQMHVFLMPLLLSGGTTLIADSPEAGF HHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCE CLRTIHDEEITSFFAPPTVWIALLRHADFDPARLGTLTKAYYGASIMPVPVLLELQAKLP EEEECCHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHEEHHHCCC ALRFYNCYGQSEIGPLATVLGPDEHAERPASAGRPVLNVETRIVDEKMNDVAPGTLGEIV CEEEEECCCCCCCCCCCEECCCCHHHCCCHHCCCCEEEEHHHHHHHHHHCCCCCHHHHHH HRSPQLLTEYWDKPEQTAEAFAGGWFHSGDLGYMDVAGYLYVVDRIKDVINSGGVLVSSR HCCHHHHHHHCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECH EVEECLYTHPAVAEVAVFALSHPKWVEAVTACVVLKRDTAATEETLVAHARDALAPFKVP HHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCCC KRVVFVADLPRNTAGKLLKRKLREDYAALFSDETGGTGR CEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]