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The map label for this gene is ydiB [H]

Identifier: 73538854

GI number: 73538854

Start: 1762437

End: 1763270

Strand: Direct

Name: ydiB [H]

Synonym: Reut_B5029

Alternate gene names: 73538854

Gene position: 1762437-1763270 (Clockwise)

Preceding gene: 73538851

Following gene: 73538855

Centisome position: 64.65

GC content: 67.03

Gene sequence:

>834_bases
ATGATCAACGGCAAGACCACCCTCATTGCGCACCTTGGCTTCCCCACGGAATCCTTCAAGGCGCCCATGATCTACAACCC
CTGGTTCGAACAGCAGGGCATCGACGCCGTCGTGGTGCCGATGGGCGTGAAGCCCGACGACTACCCCGTGTTCTTCCGCT
CGCTGTTCCGCCTGAGCAATATCCGCGGGGCGCTGGTCACCATGCCGCACAAGGTCGCCACCGTCGAACTGGTCGACGAA
CTCACGCCGACCGCGCGCATCGCCGGTGCCTGCAACGCCGTGCTGCTGCGCGATGACGGCAAGCTGGTCGGCGACCAGTT
CGACGGCGCGGGCTTCGTGCGCGGCATCCAGCGCAAGGGCTGCCGGCTCGAAGGCGCGCGCGCCATGGTGTCGGGCAGCG
GCGGCGTAGGCAGCGCGATCGCCGCTTCGCTGGCCGCAGCGAGCGTGGCCGAACTGGCACTGTTCGATACACGCGAGGCT
TCCTCGCTCGCACTGCGTGACCGCCTGCTCGCGCACTACCCGGCGCTGCGCGTCACCACCGGTTCGGCCGACCCGGCCGG
CTACGACGTAGTGGTCAACGCCACCCCGCTCGGCATGAACCCCGGCGATGCGCTGCCGTTCGACGTGACCCGCATCGATG
CGGGCGCGATGGTCGGCGAAGTGGTGATGAAGTCCGAATACACGCCGTTCCTGGAAGCCGCCATCGCGCGCGGCTGCAAG
GTCCAGGTCGGCACCGACATGCTGTTCGAAATGATTCCCGCATACCTGGAGTTTTTCGGCTTCGGCACCGCTACGCCGGA
AGCGCTGCGCGCCGTGGCTCGCCTTAAATACTGA

Upstream 100 bases:

>100_bases
CGGCTCACGGGCCACTAATCTCCGGGCATCGAGACATTCCCTCGCCAGGCGAGGACCACGCATCCACGCCGCCCCGGACT
CCTCCGCCCCCAGGAACATC

Downstream 100 bases:

>100_bases
TAGACAGCGCGGGAAGACGCGACGGCCCCGCGCCTGCGCACTCCCGCCACGAACAAGACCGGTTGCCAGCCTGTCCAGGC
GCTACAGGGCATACCGGAAA

Product: shikimate dehydrogenase

Products: NA

Alternate protein names: NAD-dependent shikimate 5-dehydrogenase 2 [H]

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MINGKTTLIAHLGFPTESFKAPMIYNPWFEQQGIDAVVVPMGVKPDDYPVFFRSLFRLSNIRGALVTMPHKVATVELVDE
LTPTARIAGACNAVLLRDDGKLVGDQFDGAGFVRGIQRKGCRLEGARAMVSGSGGVGSAIAASLAAASVAELALFDTREA
SSLALRDRLLAHYPALRVTTGSADPAGYDVVVNATPLGMNPGDALPFDVTRIDAGAMVGEVVMKSEYTPFLEAAIARGCK
VQVGTDMLFEMIPAYLEFFGFGTATPEALRAVARLKY

Sequences:

>Translated_277_residues
MINGKTTLIAHLGFPTESFKAPMIYNPWFEQQGIDAVVVPMGVKPDDYPVFFRSLFRLSNIRGALVTMPHKVATVELVDE
LTPTARIAGACNAVLLRDDGKLVGDQFDGAGFVRGIQRKGCRLEGARAMVSGSGGVGSAIAASLAAASVAELALFDTREA
SSLALRDRLLAHYPALRVTTGSADPAGYDVVVNATPLGMNPGDALPFDVTRIDAGAMVGEVVMKSEYTPFLEAAIARGCK
VQVGTDMLFEMIPAYLEFFGFGTATPEALRAVARLKY
>Mature_277_residues
MINGKTTLIAHLGFPTESFKAPMIYNPWFEQQGIDAVVVPMGVKPDDYPVFFRSLFRLSNIRGALVTMPHKVATVELVDE
LTPTARIAGACNAVLLRDDGKLVGDQFDGAGFVRGIQRKGCRLEGARAMVSGSGGVGSAIAASLAAASVAELALFDTREA
SSLALRDRLLAHYPALRVTTGSADPAGYDVVVNATPLGMNPGDALPFDVTRIDAGAMVGEVVMKSEYTPFLEAAIARGCK
VQVGTDMLFEMIPAYLEFFGFGTATPEALRAVARLKY

Specific function: Aromatic amino acids biosynthesis; shikimate pathway; fourth step. [C]

COG id: COG0169

COG function: function code E; Shikimate 5-dehydrogenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the shikimate dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI1787983, Length=260, Percent_Identity=30.7692307692308, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1789675, Length=234, Percent_Identity=26.9230769230769, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR022872
- InterPro:   IPR013708
- InterPro:   IPR022893
- InterPro:   IPR006151 [H]

Pfam domain/function: PF01488 Shikimate_DH; PF08501 Shikimate_dh_N [H]

EC number: =1.1.1.282 [H]

Molecular weight: Translated: 29463; Mature: 29463

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINGKTTLIAHLGFPTESFKAPMIYNPWFEQQGIDAVVVPMGVKPDDYPVFFRSLFRLSN
CCCCCEEEEEEECCCHHHCCCCEEECCCCHHCCCCEEEEECCCCCCCHHHHHHHHHHHHC
IRGALVTMPHKVATVELVDELTPTARIAGACNAVLLRDDGKLVGDQFDGAGFVRGIQRKG
CCEEEEECCCHHHHHHHHHHCCCHHHHHCCCCEEEEECCCCEECCCCCCCHHHHHHHHCC
CRLEGARAMVSGSGGVGSAIAASLAAASVAELALFDTREASSLALRDRLLAHYPALRVTT
CEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEC
GSADPAGYDVVVNATPLGMNPGDALPFDVTRIDAGAMVGEVVMKSEYTPFLEAAIARGCK
CCCCCCCEEEEEECEECCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCHHHHHHHHCCCE
VQVGTDMLFEMIPAYLEFFGFGTATPEALRAVARLKY
EEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MINGKTTLIAHLGFPTESFKAPMIYNPWFEQQGIDAVVVPMGVKPDDYPVFFRSLFRLSN
CCCCCEEEEEEECCCHHHCCCCEEECCCCHHCCCCEEEEECCCCCCCHHHHHHHHHHHHC
IRGALVTMPHKVATVELVDELTPTARIAGACNAVLLRDDGKLVGDQFDGAGFVRGIQRKG
CCEEEEECCCHHHHHHHHHHCCCHHHHHCCCCEEEEECCCCEECCCCCCCHHHHHHHHCC
CRLEGARAMVSGSGGVGSAIAASLAAASVAELALFDTREASSLALRDRLLAHYPALRVTT
CEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEC
GSADPAGYDVVVNATPLGMNPGDALPFDVTRIDAGAMVGEVVMKSEYTPFLEAAIARGCK
CCCCCCCEEEEEECEECCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCHHHHHHHHCCCE
VQVGTDMLFEMIPAYLEFFGFGTATPEALRAVARLKY
EEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA