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The map label for this gene is ydcI [H]

Identifier: 73538851

GI number: 73538851

Start: 1758242

End: 1759219

Strand: Direct

Name: ydcI [H]

Synonym: Reut_B5026

Alternate gene names: 73538851

Gene position: 1758242-1759219 (Clockwise)

Preceding gene: 73538846

Following gene: 73538854

Centisome position: 64.5

GC content: 68.3

Gene sequence:

>978_bases
ATGGAACGGCAAGAGCAGGCCGCGCAGGACATCTTCCGTAACCGCGTGCGGCTGCGGCATCTCTATTGCTTCGTCGCGGT
CTCGCAAACCCAGCATCTGGGCCGCGCCGCGGACCGCCTCGGACTGACACAGCCAGCGGTTTCCAAGACCCTGAGCGAAC
TGGAAGAACTGGCCGGCACGCGGCTGCTCGTACGGCAGCGCGCCGGCACCGAGCTGACCACTGCGGGCACGCGTTTCCTG
CAGCATGCGCTGCGCATCCTGGCCGATATTGACGCCGCCGCCGGCAGCGTCACGGGCGAAAGCGCGAAGACGCATGAACG
TATCCGCCTCGGCGCGCTGCCGAGCGTGGTGCCGGCCGTGCTGACCGATGCCGTGCTGCGCTTTCGCGCCACGTATCCGG
AGGTCGGGCTGGATGTGCGTACCGGCATGAATCGCAACCTGATCGACCAGCTCAAGGCCGACGTGCTCGATCTCGTGATC
GGCCGCATGGACGATCCGGTCGCGATGGAAAGCCTGTGGTTCGAGTCGCTGGGGCCCGATTCGCTGGTGTTGGCGGTGCG
GCCCGGGCATGCGCTGACGAAGGATTCGCGCCCGACGCTGATCGATTGCCTCGCGTGGCCGCTGGTCATTGCTGCCGCGG
GGTCGATTCCGCGGCACAACACCGAAAGCCTGCTGGCTCGCCACGGCCTGCGCCTGCCGGATGGCTGCGTGGAGACGTCC
GATGCGTATCTGGGGCGCCTGCTGGCGGAACAGAGCGACTGCGTCTGGGCCGCACCGATGTCGGCCACGCGACGCGCCAT
GGATGAAGGCGGGCTGGTAGCACTGCCCATCGACACCCTCGGCACCGAAGAGCCGGTTGGCCTGCTGCGGCACAAGGACC
GCACTCTCACGCCGATGGCCGAGGCGCTGGCCGATTGCATCCGGGCGGCGGCGCATCCCGATGCCCCGCGTCGCGGACAA
CCGCTCCCGTCTCAGTGA

Upstream 100 bases:

>100_bases
TGCATGCTTCGTCTCCGTGTTGTAAGGGGGTGGAATGACTTTAAGACACACCCAAAGTCATGTAAATTGAGTTATTGAGC
GATTACGATGAATTTTCGAT

Downstream 100 bases:

>100_bases
GTGGCCACGGGCCGGCCACCCGTCTCGGTGGTCCCTGCCGGACGGCCGCCGAAGTGTTTCACCATCAGCGCAATCGCTGC
CAGGAACGCCGGCACCGCAA

Product: regulatory protein LysR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MERQEQAAQDIFRNRVRLRHLYCFVAVSQTQHLGRAADRLGLTQPAVSKTLSELEELAGTRLLVRQRAGTELTTAGTRFL
QHALRILADIDAAAGSVTGESAKTHERIRLGALPSVVPAVLTDAVLRFRATYPEVGLDVRTGMNRNLIDQLKADVLDLVI
GRMDDPVAMESLWFESLGPDSLVLAVRPGHALTKDSRPTLIDCLAWPLVIAAAGSIPRHNTESLLARHGLRLPDGCVETS
DAYLGRLLAEQSDCVWAAPMSATRRAMDEGGLVALPIDTLGTEEPVGLLRHKDRTLTPMAEALADCIRAAAHPDAPRRGQ
PLPSQ

Sequences:

>Translated_325_residues
MERQEQAAQDIFRNRVRLRHLYCFVAVSQTQHLGRAADRLGLTQPAVSKTLSELEELAGTRLLVRQRAGTELTTAGTRFL
QHALRILADIDAAAGSVTGESAKTHERIRLGALPSVVPAVLTDAVLRFRATYPEVGLDVRTGMNRNLIDQLKADVLDLVI
GRMDDPVAMESLWFESLGPDSLVLAVRPGHALTKDSRPTLIDCLAWPLVIAAAGSIPRHNTESLLARHGLRLPDGCVETS
DAYLGRLLAEQSDCVWAAPMSATRRAMDEGGLVALPIDTLGTEEPVGLLRHKDRTLTPMAEALADCIRAAAHPDAPRRGQ
PLPSQ
>Mature_325_residues
MERQEQAAQDIFRNRVRLRHLYCFVAVSQTQHLGRAADRLGLTQPAVSKTLSELEELAGTRLLVRQRAGTELTTAGTRFL
QHALRILADIDAAAGSVTGESAKTHERIRLGALPSVVPAVLTDAVLRFRATYPEVGLDVRTGMNRNLIDQLKADVLDLVI
GRMDDPVAMESLWFESLGPDSLVLAVRPGHALTKDSRPTLIDCLAWPLVIAAAGSIPRHNTESLLARHGLRLPDGCVETS
DAYLGRLLAEQSDCVWAAPMSATRRAMDEGGLVALPIDTLGTEEPVGLLRHKDRTLTPMAEALADCIRAAAHPDAPRRGQ
PLPSQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=302, Percent_Identity=39.7350993377483, Blast_Score=221, Evalue=4e-59,
Organism=Escherichia coli, GI1787601, Length=296, Percent_Identity=27.027027027027, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787879, Length=197, Percent_Identity=32.48730964467, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1789506, Length=307, Percent_Identity=21.8241042345277, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI145693105, Length=284, Percent_Identity=24.2957746478873, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788887, Length=187, Percent_Identity=29.9465240641711, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI48994962, Length=152, Percent_Identity=32.2368421052632, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI157672245, Length=223, Percent_Identity=27.3542600896861, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788748, Length=312, Percent_Identity=23.7179487179487, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI2367136, Length=184, Percent_Identity=28.804347826087, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787589, Length=272, Percent_Identity=27.9411764705882, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790262, Length=195, Percent_Identity=28.2051282051282, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35294; Mature: 35294

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERQEQAAQDIFRNRVRLRHLYCFVAVSQTQHLGRAADRLGLTQPAVSKTLSELEELAGT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
RLLVRQRAGTELTTAGTRFLQHALRILADIDAAAGSVTGESAKTHERIRLGALPSVVPAV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHH
LTDAVLRFRATYPEVGLDVRTGMNRNLIDQLKADVLDLVIGRMDDPVAMESLWFESLGPD
HHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
SLVLAVRPGHALTKDSRPTLIDCLAWPLVIAAAGSIPRHNTESLLARHGLRLPDGCVETS
CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCHHHHH
DAYLGRLLAEQSDCVWAAPMSATRRAMDEGGLVALPIDTLGTEEPVGLLRHKDRTLTPMA
HHHHHHHHHCCCCCEEECCHHHHHHHHCCCCEEEEECHHCCCCCCHHHHHCCCCCCCHHH
EALADCIRAAAHPDAPRRGQPLPSQ
HHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MERQEQAAQDIFRNRVRLRHLYCFVAVSQTQHLGRAADRLGLTQPAVSKTLSELEELAGT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
RLLVRQRAGTELTTAGTRFLQHALRILADIDAAAGSVTGESAKTHERIRLGALPSVVPAV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHH
LTDAVLRFRATYPEVGLDVRTGMNRNLIDQLKADVLDLVIGRMDDPVAMESLWFESLGPD
HHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
SLVLAVRPGHALTKDSRPTLIDCLAWPLVIAAAGSIPRHNTESLLARHGLRLPDGCVETS
CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCHHHHH
DAYLGRLLAEQSDCVWAAPMSATRRAMDEGGLVALPIDTLGTEEPVGLLRHKDRTLTPMA
HHHHHHHHHCCCCCEEECCHHHHHHHHCCCCEEEEECHHCCCCCCHHHHHCCCCCCCHHH
EALADCIRAAAHPDAPRRGQPLPSQ
HHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]