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The map label for this gene is yjcD [H]

Identifier: 73538814

GI number: 73538814

Start: 1716294

End: 1717676

Strand: Direct

Name: yjcD [H]

Synonym: Reut_B4989

Alternate gene names: 73538814

Gene position: 1716294-1717676 (Clockwise)

Preceding gene: 73538813

Following gene: 73538815

Centisome position: 62.96

GC content: 67.32

Gene sequence:

>1383_bases
ATGATCGAACAGCCCTATCCGTCAGTGACGGAAGTCGATTCCGCGCGCCCCGAAGTCAAGAACAAGCTCGACGCCTACTT
CCAGATCACCGCCCGCGGCAGCACGCAGCGGCAGGAACTCGTGGCAGGCGTGACGACCTTCATGGCCATGGTCTACGCCG
TCTTTGTCGTGCCGGGCATGCTCGGCAAGGCCGGCTTCGACACCAGCGCGGTATTCGTGGCGGTGTGCCTGACCACGGCC
TTCGGCTCGCTGCTGATGGGGGTCTGGGCCAAGCTGCCGATCGCGATCGGCTGTGCCATTTCGCTGACCGCGTTCATGGC
CTTTGGCCTGGTGCTCGGGCAGGGGCTGTCGCCGGCCGTGGCACTCGGCGCCGTGTTCCTGATGGGCGTGGTCTTCACCG
CGATCTCCGTGACCGGCGTACGTTCCTGGATCCTGCGCAACCTGCCAGCCGGCGTGGCCCACGGCGCGGGGATCGGCATC
GGCCTGTTCCTGCTGCTGATCGCGTCCAATGATGTCGGCCTCGTGGTCAAGAACAGCGGCGCTGGCCTGCCCGTGGCGCT
GGGCAAGATCACCGCGTTCCCCGTCGTGATGTCGGTGCTGGGGCTGGCCGCCATCTTCGGCCTGGAGCGCCGGCGCGTGC
CGGGCGGCATCCTGCTGGTGATCGTCGCCATCTCGGTGCTGGGCCTGATCTTCGACCCCGCCGTGAAGTTCACTGGCGTC
TTCGCGCTGCCGTCGCTGAGCGCACCGGGCCACCAGTCGCTGATCGGCGCCATGGACATCCGCGGCGCACTGTCCGCCGC
CGTGCTGCCCAGCGTGCTGGCGCTGGTGATGACTGCCGTGTTCGATGCCACCGGCACGATCCGCGCCGTCGCGGGCCAGG
CCGGCCAGCTCGACGCCAATGGCCACATCCGCAACGGCGGACGCGCGCTCACGGCGGACTCGGTCAGTTCGATCTTCTCC
GCCATCTTCGGCGGCGCACCGGCCGCGGCCTACATCGAATCGACCGTCGGCGTTGCCGCCGGCGCCAAGACCGGCCTGAC
CGCAGTGGTAGTCGGCCTGCTGTTCCTCGCAGTGATGTTCTTCTCGCCATTGGCCGGCCTGGTGCCGTCGTACGCCACCG
CACCGGCGCTGATGTACGTGGGCCTGCTGATGCTGTCGAGCGTCTCGCGCCTGCATATGGACGACCTCGTCGATGCACTC
GCCGGTCTGGTCTGCGCGGTATTTATCGTGCTGACCTGCAATATCGTCACCGGCATCATGCTCGGCTTCTGCACGCTGGT
GGTCGGCCGCATCGTTGCGGGCGAATGGCGCAAGCTCAATGTCGGCACCGTAGCGATTGCCGTAGCACTGGCTGCGTTCT
ATGCCGGAGGCTGGGCGATCTGA

Upstream 100 bases:

>100_bases
CGCGAGCGCCACGGCCGATACCTAGAACCACGTGAGACAAAGCCTGTTCGCGGCCCCTTCCCGCCAGCCGTGGCAGCGCC
CAGCAAGGAGACAGATCATC

Downstream 100 bases:

>100_bases
AATCGATATGCCAATCGGACAACTGCTGCCTCTGGCGCGGTTGTCCGCAGTGAATTCAACGATGTCTCCTCTGCCGCCAC
AGCGGTGGATTTATGCCCTG

Product: xanthine/uracil/vitamin C permease:sulfate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 460

Protein sequence:

>460_residues
MIEQPYPSVTEVDSARPEVKNKLDAYFQITARGSTQRQELVAGVTTFMAMVYAVFVVPGMLGKAGFDTSAVFVAVCLTTA
FGSLLMGVWAKLPIAIGCAISLTAFMAFGLVLGQGLSPAVALGAVFLMGVVFTAISVTGVRSWILRNLPAGVAHGAGIGI
GLFLLLIASNDVGLVVKNSGAGLPVALGKITAFPVVMSVLGLAAIFGLERRRVPGGILLVIVAISVLGLIFDPAVKFTGV
FALPSLSAPGHQSLIGAMDIRGALSAAVLPSVLALVMTAVFDATGTIRAVAGQAGQLDANGHIRNGGRALTADSVSSIFS
AIFGGAPAAAYIESTVGVAAGAKTGLTAVVVGLLFLAVMFFSPLAGLVPSYATAPALMYVGLLMLSSVSRLHMDDLVDAL
AGLVCAVFIVLTCNIVTGIMLGFCTLVVGRIVAGEWRKLNVGTVAIAVALAAFYAGGWAI

Sequences:

>Translated_460_residues
MIEQPYPSVTEVDSARPEVKNKLDAYFQITARGSTQRQELVAGVTTFMAMVYAVFVVPGMLGKAGFDTSAVFVAVCLTTA
FGSLLMGVWAKLPIAIGCAISLTAFMAFGLVLGQGLSPAVALGAVFLMGVVFTAISVTGVRSWILRNLPAGVAHGAGIGI
GLFLLLIASNDVGLVVKNSGAGLPVALGKITAFPVVMSVLGLAAIFGLERRRVPGGILLVIVAISVLGLIFDPAVKFTGV
FALPSLSAPGHQSLIGAMDIRGALSAAVLPSVLALVMTAVFDATGTIRAVAGQAGQLDANGHIRNGGRALTADSVSSIFS
AIFGGAPAAAYIESTVGVAAGAKTGLTAVVVGLLFLAVMFFSPLAGLVPSYATAPALMYVGLLMLSSVSRLHMDDLVDAL
AGLVCAVFIVLTCNIVTGIMLGFCTLVVGRIVAGEWRKLNVGTVAIAVALAAFYAGGWAI
>Mature_460_residues
MIEQPYPSVTEVDSARPEVKNKLDAYFQITARGSTQRQELVAGVTTFMAMVYAVFVVPGMLGKAGFDTSAVFVAVCLTTA
FGSLLMGVWAKLPIAIGCAISLTAFMAFGLVLGQGLSPAVALGAVFLMGVVFTAISVTGVRSWILRNLPAGVAHGAGIGI
GLFLLLIASNDVGLVVKNSGAGLPVALGKITAFPVVMSVLGLAAIFGLERRRVPGGILLVIVAISVLGLIFDPAVKFTGV
FALPSLSAPGHQSLIGAMDIRGALSAAVLPSVLALVMTAVFDATGTIRAVAGQAGQLDANGHIRNGGRALTADSVSSIFS
AIFGGAPAAAYIESTVGVAAGAKTGLTAVVVGLLFLAVMFFSPLAGLVPSYATAPALMYVGLLMLSSVSRLHMDDLVDAL
AGLVCAVFIVLTCNIVTGIMLGFCTLVVGRIVAGEWRKLNVGTVAIAVALAAFYAGGWAI

Specific function: Unknown

COG id: COG2252

COG function: function code R; Permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790499, Length=439, Percent_Identity=71.9817767653759, Blast_Score=617, Evalue=1e-178,
Organism=Escherichia coli, GI48994909, Length=444, Percent_Identity=73.6486486486486, Blast_Score=617, Evalue=1e-178,
Organism=Escherichia coli, GI87082309, Length=442, Percent_Identity=39.1402714932127, Blast_Score=293, Evalue=1e-80,
Organism=Escherichia coli, GI1790150, Length=432, Percent_Identity=37.7314814814815, Blast_Score=260, Evalue=1e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 46786; Mature: 46786

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]