| Definition | Ralstonia eutropha JMP134 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_007348 |
| Length | 2,726,152 |
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The map label for this gene is cyoB [H]
Identifier: 73538716
GI number: 73538716
Start: 1613808
End: 1615811
Strand: Direct
Name: cyoB [H]
Synonym: Reut_B4891
Alternate gene names: 73538716
Gene position: 1613808-1615811 (Clockwise)
Preceding gene: 73538715
Following gene: 73538717
Centisome position: 59.2
GC content: 62.72
Gene sequence:
>2004_bases ATGCAGGAGCGATCCGAACTCGCCACGCTTATCTTCGGCCGCCTGAGCTGGGAGGCCATACCGCTGCACGAGCCGATCCT GCTGGGCACCTTCATCGTCGTGGTCATCGGCGGACTCGCGTTGCTGGGCGCGGTGACCTATTTCCGCCTGTGGGGCTATC TGTGGCGCGAGTGGTTCACCAGCATCGACCACAAGAAGATAGGCATCATGTACGTGATCCTGGGGATCATCATGCTGCTG CGGGGTTTTGCCGACGCCGTCATGATGCGCATGCAGCAGTCGGTGGCCTTTGGCGATAACCTCGGCTTCCTGCCGCCCCA CCACTACGACCAGATCTTCACCGCGCACGGCGTGATCATGATCTTCTTCGTGGCCATGCCGCTGGTGACGGGGCTGATGA ACTTCGTGGTGCCACTGCAGATTGGCGCGCGCGACGTGGCCTTCCCCTTCCTCAATAACTTCAGCTTCTGGATGACCACC GGCGGCGCCGTGCTGGTGATGATGTCGCTGTTCGTCGGCGAGTTCGCGCGCACCGGGTGGCTCGCATATCCGCCGCTGTC GGGCATCGTCCATAGCCCGGATGTTGGCGTCGACTATTACCTCTGGTCATTGCAGGTGGCGGGGGTCGGGACCGTGCTGT CCGGCATCAACCTGATGGTCACCATCATCAAGATGCGCGCGCCCGGCATGACGCTGATGCGCATGCCGATCTTCACGTGG ACCGCACTGTGCGCCAACGTGCTGATCGTGGCCGCGTTCCCCGTGCTGACCGCGGCACTGGCCATGCTGGCGCTCGACCG CTACCTCGGCATGAATTTCTTCACGGCCGATCTTGGTGGCAGCGCCATGATGTACGTGAACCTGATCTGGATCTGGGGGC ACCCGGAGGTGTACATCCTGGTCCTGCCAGTATTCGGCGTGTTTTCCGAGGTGGTTTCCACGTTCTGCCAGAAGCGGCTG TTCGGCTACGCGTCGATGGTCTATGCCACGGTCGTGATTACCGTGCTGTCCTACCTGGTCTGGCTGCACCACTTCTTCAC GATGGGGTCGGGGGCGAGCGTCAACTCGTTCTTCGGCATCACGACGATGATCATCTCGATCCCGACCGGGGCGAAGCTGT TTAACTGGCTGTTCACGATGTACCACGGCCGCATCCGCTTCGAGGTGCCGATGCTGTGGACCGTCGGCTTCATGGTCACC TTCGTGATTGGCGGCATGACCGGCGTGCTGCTGGCCGTCCCGCCCGCCGACTTCTCGCTGCACAACAGCCTGTTCCTGAT TGCCCATTTCCACAACGTGATCATCGGCGGCGTGCTGTTCGGGCTGATGGCCGGGATCACGTACTGGTTCCCGAAGGCCT TCGGCTACAAGCTCGAGCCGTTCTGGGGCAAGTGCTCGTTCTGGCTCTGGCTGGTGGGCTTCTACTTCGCGTTCATGCCG CTGTACGTGCTTGGCATGAAGGGCGTGACCCGCCGCATGAGCCATTTCGAAGACCCGTCGCTGCAGGTCTGGTTCCTGCT CGCGGCGTTCGGCGCGTTCCTGATCGCGCTCGGTATCGGCTGCTTCCTGATCCAGCTGGTGGTCAGCTTCATCAACCGCG AAGCGCTGCGCGACGTCACCGGCGATCCGTGGGATGGCCGCACGCTGGAATGGTCCACGTCATCGCCACCGCCTGCCTAC AACTTCGCCTTCACGCCGATCGTCCATGACACCGACGCATGGTGGCAGATGAAGGCGCATGGCTACGAGCGTCCGGCGCA GGGCTTCATACCGATCCACATGCCCAAGAATACGGGCGCCGGCATCATCCTGGCGGGGCTTGCCACGGTCTGCGGGTTCG CGCTGATCTGGCACATCTGGTGGCTGGTGGTGCTGGCGTTCGGCGCCACGATTGTCTCGGCGCTCGTGCACACCTTCAAC TACAAGCGCGACTACTACATCCCGGCCGATACGGTCGGCAACACGGAGGCGGCGCGCTCGGCGCTGCTGACCCGCCATGC CTGA
Upstream 100 bases:
>100_bases GCTCCGTACAGTGAACGCAGCGCGGTGGCGCTGCAGTAGCACATAGCAGAACCGGGTTGCAACCGCCCCGAGAGACCTAC ACCTGGCCCTGGAGGACAAC
Downstream 100 bases:
>100_bases TACGACTGCCCCGTTCCCCGCTGGCCGCGCGCAGGCCGCACCGCCCGCCCCGCCCCACGCCGTGCCATCCGGCCATGGCA TCGACGAGGGCGAACTGCGC
Product: cytochrome-c oxidase
Products: NA
Alternate protein names: Cytochrome o subunit 1; Cytochrome o ubiquinol oxidase subunit 1; Oxidase BO(3) subunit 1; Ubiquinol oxidase chain A; Ubiquinol oxidase polypeptide I [H]
Number of amino acids: Translated: 667; Mature: 667
Protein sequence:
>667_residues MQERSELATLIFGRLSWEAIPLHEPILLGTFIVVVIGGLALLGAVTYFRLWGYLWREWFTSIDHKKIGIMYVILGIIMLL RGFADAVMMRMQQSVAFGDNLGFLPPHHYDQIFTAHGVIMIFFVAMPLVTGLMNFVVPLQIGARDVAFPFLNNFSFWMTT GGAVLVMMSLFVGEFARTGWLAYPPLSGIVHSPDVGVDYYLWSLQVAGVGTVLSGINLMVTIIKMRAPGMTLMRMPIFTW TALCANVLIVAAFPVLTAALAMLALDRYLGMNFFTADLGGSAMMYVNLIWIWGHPEVYILVLPVFGVFSEVVSTFCQKRL FGYASMVYATVVITVLSYLVWLHHFFTMGSGASVNSFFGITTMIISIPTGAKLFNWLFTMYHGRIRFEVPMLWTVGFMVT FVIGGMTGVLLAVPPADFSLHNSLFLIAHFHNVIIGGVLFGLMAGITYWFPKAFGYKLEPFWGKCSFWLWLVGFYFAFMP LYVLGMKGVTRRMSHFEDPSLQVWFLLAAFGAFLIALGIGCFLIQLVVSFINREALRDVTGDPWDGRTLEWSTSSPPPAY NFAFTPIVHDTDAWWQMKAHGYERPAQGFIPIHMPKNTGAGIILAGLATVCGFALIWHIWWLVVLAFGATIVSALVHTFN YKRDYYIPADTVGNTEAARSALLTRHA
Sequences:
>Translated_667_residues MQERSELATLIFGRLSWEAIPLHEPILLGTFIVVVIGGLALLGAVTYFRLWGYLWREWFTSIDHKKIGIMYVILGIIMLL RGFADAVMMRMQQSVAFGDNLGFLPPHHYDQIFTAHGVIMIFFVAMPLVTGLMNFVVPLQIGARDVAFPFLNNFSFWMTT GGAVLVMMSLFVGEFARTGWLAYPPLSGIVHSPDVGVDYYLWSLQVAGVGTVLSGINLMVTIIKMRAPGMTLMRMPIFTW TALCANVLIVAAFPVLTAALAMLALDRYLGMNFFTADLGGSAMMYVNLIWIWGHPEVYILVLPVFGVFSEVVSTFCQKRL FGYASMVYATVVITVLSYLVWLHHFFTMGSGASVNSFFGITTMIISIPTGAKLFNWLFTMYHGRIRFEVPMLWTVGFMVT FVIGGMTGVLLAVPPADFSLHNSLFLIAHFHNVIIGGVLFGLMAGITYWFPKAFGYKLEPFWGKCSFWLWLVGFYFAFMP LYVLGMKGVTRRMSHFEDPSLQVWFLLAAFGAFLIALGIGCFLIQLVVSFINREALRDVTGDPWDGRTLEWSTSSPPPAY NFAFTPIVHDTDAWWQMKAHGYERPAQGFIPIHMPKNTGAGIILAGLATVCGFALIWHIWWLVVLAFGATIVSALVHTFN YKRDYYIPADTVGNTEAARSALLTRHA >Mature_667_residues MQERSELATLIFGRLSWEAIPLHEPILLGTFIVVVIGGLALLGAVTYFRLWGYLWREWFTSIDHKKIGIMYVILGIIMLL RGFADAVMMRMQQSVAFGDNLGFLPPHHYDQIFTAHGVIMIFFVAMPLVTGLMNFVVPLQIGARDVAFPFLNNFSFWMTT GGAVLVMMSLFVGEFARTGWLAYPPLSGIVHSPDVGVDYYLWSLQVAGVGTVLSGINLMVTIIKMRAPGMTLMRMPIFTW TALCANVLIVAAFPVLTAALAMLALDRYLGMNFFTADLGGSAMMYVNLIWIWGHPEVYILVLPVFGVFSEVVSTFCQKRL FGYASMVYATVVITVLSYLVWLHHFFTMGSGASVNSFFGITTMIISIPTGAKLFNWLFTMYHGRIRFEVPMLWTVGFMVT FVIGGMTGVLLAVPPADFSLHNSLFLIAHFHNVIIGGVLFGLMAGITYWFPKAFGYKLEPFWGKCSFWLWLVGFYFAFMP LYVLGMKGVTRRMSHFEDPSLQVWFLLAAFGAFLIALGIGCFLIQLVVSFINREALRDVTGDPWDGRTLEWSTSSPPPAY NFAFTPIVHDTDAWWQMKAHGYERPAQGFIPIHMPKNTGAGIILAGLATVCGFALIWHIWWLVVLAFGATIVSALVHTFN YKRDYYIPADTVGNTEAARSALLTRHA
Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration. This ubiquinol oxidase shows proton pump activity across the membrane in addition to the electron transfer [H]
COG id: COG0843
COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 1
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the heme-copper respiratory oxidase family [H]
Homologues:
Organism=Homo sapiens, GI251831109, Length=509, Percent_Identity=38.1139489194499, Blast_Score=331, Evalue=1e-90, Organism=Escherichia coli, GI1786634, Length=657, Percent_Identity=65.6012176560122, Blast_Score=910, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6226519, Length=539, Percent_Identity=35.8070500927644, Blast_Score=330, Evalue=4e-91, Organism=Saccharomyces cerevisiae, GI6226524, Length=329, Percent_Identity=39.8176291793313, Blast_Score=233, Evalue=1e-61, Organism=Saccharomyces cerevisiae, GI6226523, Length=253, Percent_Identity=33.201581027668, Blast_Score=130, Evalue=6e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000883 - InterPro: IPR014207 [H]
Pfam domain/function: PF00115 COX1 [H]
EC number: 1.10.3.-
Molecular weight: Translated: 74570; Mature: 74570
Theoretical pI: Translated: 8.23; Mature: 8.23
Prosite motif: PS50855 COX1 ; PS00077 COX1_CUB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQERSELATLIFGRLSWEAIPLHEPILLGTFIVVVIGGLALLGAVTYFRLWGYLWREWFT CCCHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SIDHKKIGIMYVILGIIMLLRGFADAVMMRMQQSVAFGDNLGFLPPHHYDQIFTAHGVIM CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH IFFVAMPLVTGLMNFVVPLQIGARDVAFPFLNNFSFWMTTGGAVLVMMSLFVGEFARTGW HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCC LAYPPLSGIVHSPDVGVDYYLWSLQVAGVGTVLSGINLMVTIIKMRAPGMTLMRMPIFTW EECCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH TALCANVLIVAAFPVLTAALAMLALDRYLGMNFFTADLGGSAMMYVNLIWIWGHPEVYIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEEEEEECCCCEEEE VLPVFGVFSEVVSTFCQKRLFGYASMVYATVVITVLSYLVWLHHFFTMGSGASVNSFFGI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH TTMIISIPTGAKLFNWLFTMYHGRIRFEVPMLWTVGFMVTFVIGGMTGVLLAVPPADFSL HHHEEECCCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHCEEEEECCCCCCC HNSLFLIAHFHNVIIGGVLFGLMAGITYWFPKAFGYKLEPFWGKCSFWLWLVGFYFAFMP CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH LYVLGMKGVTRRMSHFEDPSLQVWFLLAAFGAFLIALGIGCFLIQLVVSFINREALRDVT HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GDPWDGRTLEWSTSSPPPAYNFAFTPIVHDTDAWWQMKAHGYERPAQGFIPIHMPKNTGA CCCCCCCEEEECCCCCCCCCCEEECCEEECCCHHHEEHHCCCCCCCCCCEEEEECCCCCC GIILAGLATVCGFALIWHIWWLVVLAFGATIVSALVHTFNYKRDYYIPADTVGNTEAARS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHH ALLTRHA HHHHCCC >Mature Secondary Structure MQERSELATLIFGRLSWEAIPLHEPILLGTFIVVVIGGLALLGAVTYFRLWGYLWREWFT CCCHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SIDHKKIGIMYVILGIIMLLRGFADAVMMRMQQSVAFGDNLGFLPPHHYDQIFTAHGVIM CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH IFFVAMPLVTGLMNFVVPLQIGARDVAFPFLNNFSFWMTTGGAVLVMMSLFVGEFARTGW HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCC LAYPPLSGIVHSPDVGVDYYLWSLQVAGVGTVLSGINLMVTIIKMRAPGMTLMRMPIFTW EECCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH TALCANVLIVAAFPVLTAALAMLALDRYLGMNFFTADLGGSAMMYVNLIWIWGHPEVYIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEEEEEECCCCEEEE VLPVFGVFSEVVSTFCQKRLFGYASMVYATVVITVLSYLVWLHHFFTMGSGASVNSFFGI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH TTMIISIPTGAKLFNWLFTMYHGRIRFEVPMLWTVGFMVTFVIGGMTGVLLAVPPADFSL HHHEEECCCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHCEEEEECCCCCCC HNSLFLIAHFHNVIIGGVLFGLMAGITYWFPKAFGYKLEPFWGKCSFWLWLVGFYFAFMP CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH LYVLGMKGVTRRMSHFEDPSLQVWFLLAAFGAFLIALGIGCFLIQLVVSFINREALRDVT HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GDPWDGRTLEWSTSSPPPAYNFAFTPIVHDTDAWWQMKAHGYERPAQGFIPIHMPKNTGA CCCCCCCEEEECCCCCCCCCCEEECCEEECCCHHHEEHHCCCCCCCCCCEEEEECCCCCC GIILAGLATVCGFALIWHIWWLVVLAFGATIVSALVHTFNYKRDYYIPADTVGNTEAARS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHH ALLTRHA HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: Protoheme IX (Heme B55 and B562); Copper B. [C]
Metal ions: Fe; Cu [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Oxidoreductases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]