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The map label for this gene is ydcN [H]

Identifier: 73538629

GI number: 73538629

Start: 1504343

End: 1504939

Strand: Direct

Name: ydcN [H]

Synonym: Reut_B4804

Alternate gene names: 73538629

Gene position: 1504343-1504939 (Clockwise)

Preceding gene: 73538625

Following gene: 73538630

Centisome position: 55.18

GC content: 65.66

Gene sequence:

>597_bases
ATGACGCAACCCCCGATCCAGAAGCCGCCAGCCGAGGGACCGCCCGCGGTCGGTGCCGCGCTGCAGGCGCTGCGCCAGCA
ACAGCAGCTTTCGCTCGACGACCTGTCGCGCCGCGCCGGCGTGTCCAAGTCGATGCTGTCGCAGATCGAACGCAACCTGA
CCAACCCGACCGTCGCCGTGCTGTGGCGCCTGGCCAATGCGCTTGGCGTGAATCTTGCCGATTTGCTTTCCGCCGAAGCT
GGCGGTCGTCCCGGCAGCGCAATCGCACTGGTCCAGCCGCATGCCATCCCGTCGCTCAAGAGCCCGGATGGGCACTGCGA
ACTGAAGATCCTCGGCCCGATCGAACTGGCCGGACGTTTCGAATGGTACGAACTGACGATTCAGGCGGGCGGCGTGCTCG
CGTCCGAGCCGCACGAAGCTGGCACGCAGGAGCACCTTTCGGTGCTGAGCGGCGCCATGACGGTGCAAGCGGGGTCGGAA
GAAAAGAAGCTGCGGCATGGAGAAACTGCACGCTATGCGGCGGACGTGCCACACGCCGTTCGCAACAGCGGCAAGTCGAC
GGCGGCAGCCTTACTAGTTGTAGTGCACCCGACGTAA

Upstream 100 bases:

>100_bases
GGCACTCGACATGGTTTGACTCCCGATGCTAGGATCTGATCGATAAATTGAACACGTCCGTTATACCGAACGTTTTGTGC
AATATAACGAACCACACTGC

Downstream 100 bases:

>100_bases
CTGCGGCAAGCGCTGAAACGCACCGCAGATGCGGAACCCGGCCGCTGTGACCGCGTCAAAGCCCTTAGTCCCCGGAAAAT
GCAGTGCCGCCGCATTGTCG

Product: helix-hairpin-helix DNA-binding motif-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MTQPPIQKPPAEGPPAVGAALQALRQQQQLSLDDLSRRAGVSKSMLSQIERNLTNPTVAVLWRLANALGVNLADLLSAEA
GGRPGSAIALVQPHAIPSLKSPDGHCELKILGPIELAGRFEWYELTIQAGGVLASEPHEAGTQEHLSVLSGAMTVQAGSE
EKKLRHGETARYAADVPHAVRNSGKSTAAALLVVVHPT

Sequences:

>Translated_198_residues
MTQPPIQKPPAEGPPAVGAALQALRQQQQLSLDDLSRRAGVSKSMLSQIERNLTNPTVAVLWRLANALGVNLADLLSAEA
GGRPGSAIALVQPHAIPSLKSPDGHCELKILGPIELAGRFEWYELTIQAGGVLASEPHEAGTQEHLSVLSGAMTVQAGSE
EKKLRHGETARYAADVPHAVRNSGKSTAAALLVVVHPT
>Mature_197_residues
TQPPIQKPPAEGPPAVGAALQALRQQQQLSLDDLSRRAGVSKSMLSQIERNLTNPTVAVLWRLANALGVNLADLLSAEAG
GRPGSAIALVQPHAIPSLKSPDGHCELKILGPIELAGRFEWYELTIQAGGVLASEPHEAGTQEHLSVLSGAMTVQAGSEE
KKLRHGETARYAADVPHAVRNSGKSTAAALLVVVHPT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=182, Percent_Identity=35.1648351648352, Blast_Score=102, Evalue=1e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 20784; Mature: 20653

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPPIQKPPAEGPPAVGAALQALRQQQQLSLDDLSRRAGVSKSMLSQIERNLTNPTVAV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHH
LWRLANALGVNLADLLSAEAGGRPGSAIALVQPHAIPSLKSPDGHCELKILGPIELAGRF
HHHHHHHHCCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHCCCE
EWYELTIQAGGVLASEPHEAGTQEHLSVLSGAMTVQAGSEEKKLRHGETARYAADVPHAV
EEEEEEEECCCEEECCCCCCCHHHHHHHHHHHHEEECCCHHHHHHCCCCHHHHHCCCHHH
RNSGKSTAAALLVVVHPT
HCCCCCCEEEEEEEEECC
>Mature Secondary Structure 
TQPPIQKPPAEGPPAVGAALQALRQQQQLSLDDLSRRAGVSKSMLSQIERNLTNPTVAV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHH
LWRLANALGVNLADLLSAEAGGRPGSAIALVQPHAIPSLKSPDGHCELKILGPIELAGRF
HHHHHHHHCCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHCCCE
EWYELTIQAGGVLASEPHEAGTQEHLSVLSGAMTVQAGSEEKKLRHGETARYAADVPHAV
EEEEEEEECCCEEECCCCCCCHHHHHHHHHHHHEEECCCHHHHHHCCCCHHHHHCCCHHH
RNSGKSTAAALLVVVHPT
HCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]