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The map label for this gene is ydhC [H]

Identifier: 73538626

GI number: 73538626

Start: 1501242

End: 1502006

Strand: Reverse

Name: ydhC [H]

Synonym: Reut_B4801

Alternate gene names: 73538626

Gene position: 1502006-1501242 (Counterclockwise)

Preceding gene: 73538627

Following gene: 73538616

Centisome position: 55.1

GC content: 68.1

Gene sequence:

>765_bases
ATGACACAGCCAGAAAAGAAAAGCATGGCCGGCGAGATCAAGGCCACGATCCAGCGGGAAATCGAAGCCGGCGACATGCC
GCCTGGCACGCCGCTGGACGAACGCATGCTCGCGGAGCGCTTCGGCGTATCGCGCACGCCCGTGCGCGAGGCACTGCAGC
AGTTGTCCGTGCAGAACATGGTCCGCATCGTGCCGCGCGTCGGCGTGTTTGTCTCGCGGCTGTCGATCACGCAGTTGCGC
GAAACGCTGGAACTGCTCGGAGAACTGGAGGCCGTGGCGGCGAAACTGTCCGCGCGCCGCATGGACGACGAGCAGCGCGT
GCGCCTGAAGGCCGCCCGCACCGAATGCGAACAGGCGCACGCCGAGGACGACGGCAAGCGCTTTGCGAAGGCCAACGCCG
ATTTCCATGACACGGTCTATGCCGGCAGCCACAACGAATACCTGGTCGAGCAGATCCAGAGCATCCGCCGGCTGATGCAG
CGCTACCGCCCGCGCATTTTTCAGACCCCGGCGCGCCGGCAGCGCGTGCTGGAAGACCACCAGAGGCTCGCCGACGCCAT
CCTTAGCGGCGATGAGACCGCCGCGCATGCGGCCATGCTGGAGCACGCGCCGGTCGGCACGACCGGGTTCTCCGAATTCC
TTTCCACCCTGCCCGCGAGCTATCTTGAGGGCGAGGGCGGCGGGGAGGCTGCAGCCACGCGCAGCGCCGCTCCCCGCGGC
GGCGCCAGGCGTGGCCGCAAGCCGGCCGCTTCGAAAGCGGCCTGA

Upstream 100 bases:

>100_bases
GGCACGGAACCGCCAGGCAAGGCTGTGTGTTTTCGGCGACGGCATGCATGCCAGTATCCCGTTTCGGTATACTGTGCGGT
AAAGACCGCGAACCCAGAAC

Downstream 100 bases:

>100_bases
TTCCAACAATCAGAACTTGTGCCGCATACCCATCGCCACGCCGAACTGGTTCTTCTCGTTCGGTGCGATCTGGTAGGCGC
CAGCGGCGCCGTTCAGGCTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MTQPEKKSMAGEIKATIQREIEAGDMPPGTPLDERMLAERFGVSRTPVREALQQLSVQNMVRIVPRVGVFVSRLSITQLR
ETLELLGELEAVAAKLSARRMDDEQRVRLKAARTECEQAHAEDDGKRFAKANADFHDTVYAGSHNEYLVEQIQSIRRLMQ
RYRPRIFQTPARRQRVLEDHQRLADAILSGDETAAHAAMLEHAPVGTTGFSEFLSTLPASYLEGEGGGEAAATRSAAPRG
GARRGRKPAASKAA

Sequences:

>Translated_254_residues
MTQPEKKSMAGEIKATIQREIEAGDMPPGTPLDERMLAERFGVSRTPVREALQQLSVQNMVRIVPRVGVFVSRLSITQLR
ETLELLGELEAVAAKLSARRMDDEQRVRLKAARTECEQAHAEDDGKRFAKANADFHDTVYAGSHNEYLVEQIQSIRRLMQ
RYRPRIFQTPARRQRVLEDHQRLADAILSGDETAAHAAMLEHAPVGTTGFSEFLSTLPASYLEGEGGGEAAATRSAAPRG
GARRGRKPAASKAA
>Mature_253_residues
TQPEKKSMAGEIKATIQREIEAGDMPPGTPLDERMLAERFGVSRTPVREALQQLSVQNMVRIVPRVGVFVSRLSITQLRE
TLELLGELEAVAAKLSARRMDDEQRVRLKAARTECEQAHAEDDGKRFAKANADFHDTVYAGSHNEYLVEQIQSIRRLMQR
YRPRIFQTPARRQRVLEDHQRLADAILSGDETAAHAAMLEHAPVGTTGFSEFLSTLPASYLEGEGGGEAAATRSAAPRGG
ARRGRKPAASKAA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=205, Percent_Identity=25.8536585365854, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 28029; Mature: 27898

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPEKKSMAGEIKATIQREIEAGDMPPGTPLDERMLAERFGVSRTPVREALQQLSVQNM
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
VRIVPRVGVFVSRLSITQLRETLELLGELEAVAAKLSARRMDDEQRVRLKAARTECEQAH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
AEDDGKRFAKANADFHDTVYAGSHNEYLVEQIQSIRRLMQRYRPRIFQTPARRQRVLEDH
CCHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHH
QRLADAILSGDETAAHAAMLEHAPVGTTGFSEFLSTLPASYLEGEGGGEAAATRSAAPRG
HHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHCCCCCCCHHHHHCCCCCC
GARRGRKPAASKAA
CHHCCCCCCCCCCC
>Mature Secondary Structure 
TQPEKKSMAGEIKATIQREIEAGDMPPGTPLDERMLAERFGVSRTPVREALQQLSVQNM
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
VRIVPRVGVFVSRLSITQLRETLELLGELEAVAAKLSARRMDDEQRVRLKAARTECEQAH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
AEDDGKRFAKANADFHDTVYAGSHNEYLVEQIQSIRRLMQRYRPRIFQTPARRQRVLEDH
CCHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHH
QRLADAILSGDETAAHAAMLEHAPVGTTGFSEFLSTLPASYLEGEGGGEAAATRSAAPRG
HHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHCCCCCCCHHHHHCCCCCC
GARRGRKPAASKAA
CHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]