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The map label for this gene is ytrP [H]

Identifier: 73538085

GI number: 73538085

Start: 911583

End: 912785

Strand: Direct

Name: ytrP [H]

Synonym: Reut_B4255

Alternate gene names: 73538085

Gene position: 911583-912785 (Clockwise)

Preceding gene: 73538084

Following gene: 73538087

Centisome position: 33.44

GC content: 66.58

Gene sequence:

>1203_bases
ATGTCCGTCCCTACCGCGCTGCTTGTGATCACCGCGGCGCTGAGCGCCATGATGCTGGCCATCGTCTGGTCTCTGCGGCG
CTGCGGGCTTCCCGGCGTGCCGGACTGGTGCAACGCCAACCTGCTTGTCACCATCTCGCTGGTGCTGTTCACGCTGCGCG
GCTATGTCAACGACATTTTTTCGCTGGTCATGGCAAACGCTGCGCTGGCCGGCGCGCTGGCGCTGTTCTATGCCGGATGC
GTGCGGTTCTGTGGCGGCCAGCCTCGCTGGGGCAGGCTGGCCGCCGGCCTGCTGGCCACCATGGCTGTGGTGGTGGCCTG
GCGCTATGTCTTCGATGTCTTCACTACGCGCGTGGTCGCGGTCTCCGCCTTTCACGCGGTGCTGTGCGCGCTGACGGGCA
TCACCCTGATCCGCTGGCGGCCCCGTAGTCGCTTTGGCCACTACCATCTGACAACGGCCGGCTTCGCGCTGTTTTTCGCG
CTTGGCCACACCGCGCGAGGGCTGCTGTCGGCGTTCTCGCTGATGGGCGATCCCTACAGCCTGCAGTCGCTTGGCCTGAA
TACCTTCTTCCTGACCCTGGGTGCCCTTGTCATGCCAGCGCTGACCATGGGTGCGGTGCTCATGATCCATGACACCATGG
TGCGCAGGCTGGAGGCCATCGCCAATACCGATGGACTGACGGGCGTGATGTCGCGCAAGGCCTGGGAGGACATGGCTAGC
CGTGCGCTTGCAGCAGGGGCCCGCGGTGGCGTCCCGCCGGCGCTTCTCATCATCGACATCGACCGCTTCAAGGGCGTTAA
TGACACCTACGGGCACGCCGCGGGTGATGCTGTCCTCAAGGGCTTTGCCAGCCTGGCGGGCGCGCAAGTGCGCTCAACTG
ATAGCCTTGGCCGGCTCGGCGGCGAAGAGTTTGCCGTCGTCCTGCCGGCCACGCGCGTCGCCGATGCCGTGGTCATCGCG
GAACGCATCCGCGCAGGCGCGGAGCAGCACGCGGTTCGTATCGGAGAACACGGCACGATTGTTCGCTACACCATCAGCGG
CGGCGTGGCGTGCTTGCGCCCCGGCGAGACCCTCGCCCAGCTTAGCGCGCGTGCCGATGCCGCGTTGTACCGGGCCAAGC
TGGAAGGCCGCAACCGGATCGTTGTGCATGAAGACAGGCAGAGCACCGCAACGGCACCGGCGCGCGAAGCACTGCCCGCC
TGA

Upstream 100 bases:

>100_bases
CCGAACCACGGCACGAAGGGGGGCGGAAGAGCTGGCTTTACCGCACACCGTATCATTACGGCTTTGCCTCAGCGGCTGCC
CTGCTCCTGGATTTCCACCG

Downstream 100 bases:

>100_bases
CTACCCGATCGGCCAGGTGGCAGCCCTAGTCTTCCGCTGCAACGCCGCGATAAGCGCCGGGACGAGACCCCGTCCAGCGT
CGGAACGCGCGGTGGAAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MSVPTALLVITAALSAMMLAIVWSLRRCGLPGVPDWCNANLLVTISLVLFTLRGYVNDIFSLVMANAALAGALALFYAGC
VRFCGGQPRWGRLAAGLLATMAVVVAWRYVFDVFTTRVVAVSAFHAVLCALTGITLIRWRPRSRFGHYHLTTAGFALFFA
LGHTARGLLSAFSLMGDPYSLQSLGLNTFFLTLGALVMPALTMGAVLMIHDTMVRRLEAIANTDGLTGVMSRKAWEDMAS
RALAAGARGGVPPALLIIDIDRFKGVNDTYGHAAGDAVLKGFASLAGAQVRSTDSLGRLGGEEFAVVLPATRVADAVVIA
ERIRAGAEQHAVRIGEHGTIVRYTISGGVACLRPGETLAQLSARADAALYRAKLEGRNRIVVHEDRQSTATAPAREALPA

Sequences:

>Translated_400_residues
MSVPTALLVITAALSAMMLAIVWSLRRCGLPGVPDWCNANLLVTISLVLFTLRGYVNDIFSLVMANAALAGALALFYAGC
VRFCGGQPRWGRLAAGLLATMAVVVAWRYVFDVFTTRVVAVSAFHAVLCALTGITLIRWRPRSRFGHYHLTTAGFALFFA
LGHTARGLLSAFSLMGDPYSLQSLGLNTFFLTLGALVMPALTMGAVLMIHDTMVRRLEAIANTDGLTGVMSRKAWEDMAS
RALAAGARGGVPPALLIIDIDRFKGVNDTYGHAAGDAVLKGFASLAGAQVRSTDSLGRLGGEEFAVVLPATRVADAVVIA
ERIRAGAEQHAVRIGEHGTIVRYTISGGVACLRPGETLAQLSARADAALYRAKLEGRNRIVVHEDRQSTATAPAREALPA
>Mature_399_residues
SVPTALLVITAALSAMMLAIVWSLRRCGLPGVPDWCNANLLVTISLVLFTLRGYVNDIFSLVMANAALAGALALFYAGCV
RFCGGQPRWGRLAAGLLATMAVVVAWRYVFDVFTTRVVAVSAFHAVLCALTGITLIRWRPRSRFGHYHLTTAGFALFFAL
GHTARGLLSAFSLMGDPYSLQSLGLNTFFLTLGALVMPALTMGAVLMIHDTMVRRLEAIANTDGLTGVMSRKAWEDMASR
ALAAGARGGVPPALLIIDIDRFKGVNDTYGHAAGDAVLKGFASLAGAQVRSTDSLGRLGGEEFAVVLPATRVADAVVIAE
RIRAGAEQHAVRIGEHGTIVRYTISGGVACLRPGETLAQLSARADAALYRAKLEGRNRIVVHEDRQSTATAPAREALPA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=206, Percent_Identity=33.9805825242718, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1788381, Length=195, Percent_Identity=37.9487179487179, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1786584, Length=219, Percent_Identity=35.1598173515982, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI145693134, Length=248, Percent_Identity=30.6451612903226, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI87081881, Length=191, Percent_Identity=35.0785340314136, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI87082007, Length=195, Percent_Identity=33.8461538461538, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1787802, Length=212, Percent_Identity=33.0188679245283, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=37.037037037037, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=29.940119760479, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787056, Length=172, Percent_Identity=30.8139534883721, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI87081974, Length=183, Percent_Identity=26.2295081967213, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787541, Length=171, Percent_Identity=33.9181286549708, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 42463; Mature: 42332

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVPTALLVITAALSAMMLAIVWSLRRCGLPGVPDWCNANLLVTISLVLFTLRGYVNDIF
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHH
SLVMANAALAGALALFYAGCVRFCGGQPRWGRLAAGLLATMAVVVAWRYVFDVFTTRVVA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSAFHAVLCALTGITLIRWRPRSRFGHYHLTTAGFALFFALGHTARGLLSAFSLMGDPYS
HHHHHHHHHHHHHHHHEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
LQSLGLNTFFLTLGALVMPALTMGAVLMIHDTMVRRLEAIANTDGLTGVMSRKAWEDMAS
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
RALAAGARGGVPPALLIIDIDRFKGVNDTYGHAAGDAVLKGFASLAGAQVRSTDSLGRLG
HHHHCCCCCCCCCEEEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHCCCHHHHHCC
GEEFAVVLPATRVADAVVIAERIRAGAEQHAVRIGEHGTIVRYTISGGVACLRPGETLAQ
CCCEEEEECHHHHHHHHHHHHHHHCCHHHHHEEECCCCCEEEEEECCCEEEECCCHHHHH
LSARADAALYRAKLEGRNRIVVHEDRQSTATAPAREALPA
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHCCCC
>Mature Secondary Structure 
SVPTALLVITAALSAMMLAIVWSLRRCGLPGVPDWCNANLLVTISLVLFTLRGYVNDIF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHH
SLVMANAALAGALALFYAGCVRFCGGQPRWGRLAAGLLATMAVVVAWRYVFDVFTTRVVA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSAFHAVLCALTGITLIRWRPRSRFGHYHLTTAGFALFFALGHTARGLLSAFSLMGDPYS
HHHHHHHHHHHHHHHHEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
LQSLGLNTFFLTLGALVMPALTMGAVLMIHDTMVRRLEAIANTDGLTGVMSRKAWEDMAS
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
RALAAGARGGVPPALLIIDIDRFKGVNDTYGHAAGDAVLKGFASLAGAQVRSTDSLGRLG
HHHHCCCCCCCCCEEEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHCCCHHHHHCC
GEEFAVVLPATRVADAVVIAERIRAGAEQHAVRIGEHGTIVRYTISGGVACLRPGETLAQ
CCCEEEEECHHHHHHHHHHHHHHHCCHHHHHEEECCCCCEEEEEECCCEEEECCCHHHHH
LSARADAALYRAKLEGRNRIVVHEDRQSTATAPAREALPA
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1699930; 9387221; 9384377 [H]