| Definition | Ralstonia eutropha JMP134 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_007348 |
| Length | 2,726,152 |
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The map label for this gene is icd [H]
Identifier: 73538031
GI number: 73538031
Start: 841140
End: 843383
Strand: Direct
Name: icd [H]
Synonym: Reut_B4201
Alternate gene names: 73538031
Gene position: 841140-843383 (Clockwise)
Preceding gene: 73538022
Following gene: 73538032
Centisome position: 30.85
GC content: 61.76
Gene sequence:
>2244_bases ATGAGTACGCAGCAACCCACCATCATCTACACCCTGACTGACGAAGCCCCCCTGCTGGCGACCAGTGCTTTCCTACCTAT CATCCGCACTTTCACCAAGCCGGCCGATGTCAACGTCGTCACCAGCGATATCTCGGTAGCCGGCCGTATCCTCGGCGAAT TCCCCGAGTTCCTGACCGAAGAACAGCGCGTGCCGGACAACCTGGCCGAACTGGGCAAGCTGACGCAGGACCCTGACACC AACATCATCAAGCTACCGAACATCAGCGCGTCGCTATTCCAGCTGACCAGCGCCATCAAGGAACTGCAATCGAAGGGCTT CAAGGTTCCGGACTATCCGGAAGACCCGAAGACCGATGAGGAAAAGGCGATCCAGAAGCGCTACTCGAAGGTGCTCGGCA GCGCCGTGAACCCGGTCCTGCGCGAAGGCAACTCGGACCGCCGCGCGCCGGCCGCCGTCAAGAACTACGCCCGCAAGCAC CCGCACAGCATGGGCGAGTGGAGCATGGCCTCGCGCACGCACGTGGCCCATATGAAGCACGGCGACTTCTACCATGGCGA AAAGTCGATCACGCTGGACAAGGCGCGTGAAGTGCGCATGGAACTGGCCACCAAGAGCGGCAAGACCATCGTGCTGAAGC CGAAGGTTTCGCTGCAGGACGGCGAGATCATCGACAGCATGTTCATGAGCAAGAAGGCCCTGCTGGCCTTCTACGAAGAC CAGATGGAAGACGCGCGCAAGACCGGCGTCATGCTGAGCCTGCACGTGAAGGCCACCATGATGAAAGTCTCGCACCCGAT CGTGTTCGGCCACGCCGTCAAGGTGTTCTACAAGGACGCCTTCGCCAAGCACCAGAAGCTGTTCGACGAACTCGGCGTGA ACGTCAACAACGGCCTGGTCGACCTGTACACCAAGATCGAGCAGCTGCCCGAGTCGAAGAAGGAAGAAGTCATCCGCGAC ATGCACGCTTGCCACGAGCATCGTCCGGAACTGGCAATGGTCGATTCGGCCAAGGGCATTTCGAACCTGCACGCGCCGAA CGACGTGATCGTCGACGCCTCGATGCCGGCCATGATCCGTATCGGCGGCAAGATGTGGGGTGCCGACGGCCGTACCAAGG ACACCAAGTGCCTGATCCCGGAATCGACCTTCGCCCGCATCTATCAGGAAATCATCAACTTCTGCAAGACCAACGGCGCC TTTGATCCGGTGACGATGGGCACCGTGCCGAACGTTGGCCTGATGGCGCAGAAGGCAGAGGAATACGGTTCGCACGACAA GACCTTCGAGATCGCCGAAGACGGCGAAGCCCGCATCGTCGACAACGCGACCGGCGAAGTCCTGTCCGCGCTCACGCAGA AGGTTGAGCAAGGCGACATCTGGCGCATGTGCCAGGTCAAGGATGCGCCGATCCGCGACTGGGTCAAGCTGGCCGTCACG CGCGCGCGCAACTCGGGCATGCCGGCGGTGTTCTGGCTGGACGCCTATCGTCCGCACGAGGCCGAGCTGATCAAGAAGGT GGAAACGTACCTGAAGGACTACGACACCAAGGGCCTGGATATCCAGATCATGTCGCAGGTCCGCGCAATGCGTTACACGC TCGAGCGCGTGATCCGCGGACTGGACACCATCTCGGTGACCGGCAACATCCTGCGCGACTACCTGACCGACCTGTTCCCG ATCATGGAACTGGGCACCAGCGCCAAGATGCTGTCGATCGTTCCGCTGATGGCCGGTGGCGGCATGTACGAAACCGGCGC TGGCGGTTCGGCACCGAAGCACGTGCAGCAGCTCGTGGAAGAAAACCACCTGCGCTGGGACTCGCTCGGTGAATTCCTGG CGCTGGCTGTGTCGCTGGAAGAGCTGGGCATCAAGTCCGGTAACGCCAAGGCCAAGGTGCTCGCCAAGACGCTGGACGCC GCCACAGGCAAGCTGCTCGACAACGCCAAGAGCCCGTCGCCGAAGACCGGCCAGCTCGACAACCGCGGCAGCCAGTTCTA CCTGGCCATGTACTGGGCCCAGGAACTCGCCGCGCAAACCGAAGATGCCGCCCTGGCTGCCACCTTCGCACCGCTGGCCA AGCAACTGACCGACAACGAGAAGACTATCGTTGGCGAACTGTCCGACGTGCAGGGCAAGCCGGTCGATATCGGCGGCTAC TACATGCCGGACGCCGAGAAGCTGTCCGCCATCATGCGTCCGAGCAAGACGCTGAACGCGGCGCTGGATTCCGTCCAGGG CTGA
Upstream 100 bases:
>100_bases AAAATTCGGTGTTTGCCGGTGGCTGAATGGTCCCAGCCGCCGGCGAGTGGTTCCATTTGTCGTTCTATTCTTTGACATCC CCCCGATCCAGAGGCAAGCA
Downstream 100 bases:
>100_bases CAGGCATTCATTGTGCCGCAGGCGCTTCGGCGCCTGCCTGAAGCCGGAGGTTGGCATTGCTGATGCCGCCTCCGGCTTTT TTATTGGTTGGCACCCTGCT
Product: isocitrate dehydrogenase NADP-dependent, monomeric type
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 747; Mature: 746
Protein sequence:
>747_residues MSTQQPTIIYTLTDEAPLLATSAFLPIIRTFTKPADVNVVTSDISVAGRILGEFPEFLTEEQRVPDNLAELGKLTQDPDT NIIKLPNISASLFQLTSAIKELQSKGFKVPDYPEDPKTDEEKAIQKRYSKVLGSAVNPVLREGNSDRRAPAAVKNYARKH PHSMGEWSMASRTHVAHMKHGDFYHGEKSITLDKAREVRMELATKSGKTIVLKPKVSLQDGEIIDSMFMSKKALLAFYED QMEDARKTGVMLSLHVKATMMKVSHPIVFGHAVKVFYKDAFAKHQKLFDELGVNVNNGLVDLYTKIEQLPESKKEEVIRD MHACHEHRPELAMVDSAKGISNLHAPNDVIVDASMPAMIRIGGKMWGADGRTKDTKCLIPESTFARIYQEIINFCKTNGA FDPVTMGTVPNVGLMAQKAEEYGSHDKTFEIAEDGEARIVDNATGEVLSALTQKVEQGDIWRMCQVKDAPIRDWVKLAVT RARNSGMPAVFWLDAYRPHEAELIKKVETYLKDYDTKGLDIQIMSQVRAMRYTLERVIRGLDTISVTGNILRDYLTDLFP IMELGTSAKMLSIVPLMAGGGMYETGAGGSAPKHVQQLVEENHLRWDSLGEFLALAVSLEELGIKSGNAKAKVLAKTLDA ATGKLLDNAKSPSPKTGQLDNRGSQFYLAMYWAQELAAQTEDAALAATFAPLAKQLTDNEKTIVGELSDVQGKPVDIGGY YMPDAEKLSAIMRPSKTLNAALDSVQG
Sequences:
>Translated_747_residues MSTQQPTIIYTLTDEAPLLATSAFLPIIRTFTKPADVNVVTSDISVAGRILGEFPEFLTEEQRVPDNLAELGKLTQDPDT NIIKLPNISASLFQLTSAIKELQSKGFKVPDYPEDPKTDEEKAIQKRYSKVLGSAVNPVLREGNSDRRAPAAVKNYARKH PHSMGEWSMASRTHVAHMKHGDFYHGEKSITLDKAREVRMELATKSGKTIVLKPKVSLQDGEIIDSMFMSKKALLAFYED QMEDARKTGVMLSLHVKATMMKVSHPIVFGHAVKVFYKDAFAKHQKLFDELGVNVNNGLVDLYTKIEQLPESKKEEVIRD MHACHEHRPELAMVDSAKGISNLHAPNDVIVDASMPAMIRIGGKMWGADGRTKDTKCLIPESTFARIYQEIINFCKTNGA FDPVTMGTVPNVGLMAQKAEEYGSHDKTFEIAEDGEARIVDNATGEVLSALTQKVEQGDIWRMCQVKDAPIRDWVKLAVT RARNSGMPAVFWLDAYRPHEAELIKKVETYLKDYDTKGLDIQIMSQVRAMRYTLERVIRGLDTISVTGNILRDYLTDLFP IMELGTSAKMLSIVPLMAGGGMYETGAGGSAPKHVQQLVEENHLRWDSLGEFLALAVSLEELGIKSGNAKAKVLAKTLDA ATGKLLDNAKSPSPKTGQLDNRGSQFYLAMYWAQELAAQTEDAALAATFAPLAKQLTDNEKTIVGELSDVQGKPVDIGGY YMPDAEKLSAIMRPSKTLNAALDSVQG >Mature_746_residues STQQPTIIYTLTDEAPLLATSAFLPIIRTFTKPADVNVVTSDISVAGRILGEFPEFLTEEQRVPDNLAELGKLTQDPDTN IIKLPNISASLFQLTSAIKELQSKGFKVPDYPEDPKTDEEKAIQKRYSKVLGSAVNPVLREGNSDRRAPAAVKNYARKHP HSMGEWSMASRTHVAHMKHGDFYHGEKSITLDKAREVRMELATKSGKTIVLKPKVSLQDGEIIDSMFMSKKALLAFYEDQ MEDARKTGVMLSLHVKATMMKVSHPIVFGHAVKVFYKDAFAKHQKLFDELGVNVNNGLVDLYTKIEQLPESKKEEVIRDM HACHEHRPELAMVDSAKGISNLHAPNDVIVDASMPAMIRIGGKMWGADGRTKDTKCLIPESTFARIYQEIINFCKTNGAF DPVTMGTVPNVGLMAQKAEEYGSHDKTFEIAEDGEARIVDNATGEVLSALTQKVEQGDIWRMCQVKDAPIRDWVKLAVTR ARNSGMPAVFWLDAYRPHEAELIKKVETYLKDYDTKGLDIQIMSQVRAMRYTLERVIRGLDTISVTGNILRDYLTDLFPI MELGTSAKMLSIVPLMAGGGMYETGAGGSAPKHVQQLVEENHLRWDSLGEFLALAVSLEELGIKSGNAKAKVLAKTLDAA TGKLLDNAKSPSPKTGQLDNRGSQFYLAMYWAQELAAQTEDAALAATFAPLAKQLTDNEKTIVGELSDVQGKPVDIGGYY MPDAEKLSAIMRPSKTLNAALDSVQG
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 82477; Mature: 82345
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTQQPTIIYTLTDEAPLLATSAFLPIIRTFTKPADVNVVTSDISVAGRILGEFPEFLTE CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHH EQRVPDNLAELGKLTQDPDTNIIKLPNISASLFQLTSAIKELQSKGFKVPDYPEDPKTDE HHCCCHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH EKAIQKRYSKVLGSAVNPVLREGNSDRRAPAAVKNYARKHPHSMGEWSMASRTHVAHMKH HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC GDFYHGEKSITLDKAREVRMELATKSGKTIVLKPKVSLQDGEIIDSMFMSKKALLAFYED CCCCCCCCCEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH QMEDARKTGVMLSLHVKATMMKVSHPIVFGHAVKVFYKDAFAKHQKLFDELGVNVNNGLV HHHHHHHCCEEEEEEHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH DLYTKIEQLPESKKEEVIRDMHACHEHRPELAMVDSAKGISNLHAPNDVIVDASMPAMIR HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEECCCCEEEE IGGKMWGADGRTKDTKCLIPESTFARIYQEIINFCKTNGAFDPVTMGTVPNVGLMAQKAE ECCEEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHH EYGSHDKTFEIAEDGEARIVDNATGEVLSALTQKVEQGDIWRMCQVKDAPIRDWVKLAVT HHCCCCCEEEECCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH RARNSGMPAVFWLDAYRPHEAELIKKVETYLKDYDTKGLDIQIMSQVRAMRYTLERVIRG HHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC LDTISVTGNILRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMYETGAGGSAPKHVQQLVE CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHH ENHLRWDSLGEFLALAVSLEELGIKSGNAKAKVLAKTLDAATGKLLDNAKSPSPKTGQLD HCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC NRGSQFYLAMYWAQELAAQTEDAALAATFAPLAKQLTDNEKTIVGELSDVQGKPVDIGGY CCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCEECCCE YMPDAEKLSAIMRPSKTLNAALDSVQG ECCCHHHHHHHHCCCHHHHHHHHHCCC >Mature Secondary Structure STQQPTIIYTLTDEAPLLATSAFLPIIRTFTKPADVNVVTSDISVAGRILGEFPEFLTE CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHH EQRVPDNLAELGKLTQDPDTNIIKLPNISASLFQLTSAIKELQSKGFKVPDYPEDPKTDE HHCCCHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH EKAIQKRYSKVLGSAVNPVLREGNSDRRAPAAVKNYARKHPHSMGEWSMASRTHVAHMKH HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC GDFYHGEKSITLDKAREVRMELATKSGKTIVLKPKVSLQDGEIIDSMFMSKKALLAFYED CCCCCCCCCEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH QMEDARKTGVMLSLHVKATMMKVSHPIVFGHAVKVFYKDAFAKHQKLFDELGVNVNNGLV HHHHHHHCCEEEEEEHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH DLYTKIEQLPESKKEEVIRDMHACHEHRPELAMVDSAKGISNLHAPNDVIVDASMPAMIR HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEECCCCEEEE IGGKMWGADGRTKDTKCLIPESTFARIYQEIINFCKTNGAFDPVTMGTVPNVGLMAQKAE ECCEEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHH EYGSHDKTFEIAEDGEARIVDNATGEVLSALTQKVEQGDIWRMCQVKDAPIRDWVKLAVT HHCCCCCEEEECCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH RARNSGMPAVFWLDAYRPHEAELIKKVETYLKDYDTKGLDIQIMSQVRAMRYTLERVIRG HHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC LDTISVTGNILRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMYETGAGGSAPKHVQQLVE CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHH ENHLRWDSLGEFLALAVSLEELGIKSGNAKAKVLAKTLDAATGKLLDNAKSPSPKTGQLD HCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC NRGSQFYLAMYWAQELAAQTEDAALAATFAPLAKQLTDNEKTIVGELSDVQGKPVDIGGY CCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCEECCCE YMPDAEKLSAIMRPSKTLNAALDSVQG ECCCHHHHHHHHCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]