| Definition | Ralstonia eutropha JMP134 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_007348 |
| Length | 2,726,152 |
Click here to switch to the map view.
The map label for this gene is ybiO [H]
Identifier: 73537398
GI number: 73537398
Start: 116826
End: 119114
Strand: Reverse
Name: ybiO [H]
Synonym: Reut_B3563
Alternate gene names: 73537398
Gene position: 119114-116826 (Counterclockwise)
Preceding gene: 73537401
Following gene: 73537397
Centisome position: 4.37
GC content: 67.58
Gene sequence:
>2289_bases ATGCGCCCCTTCACCCCTGATGCCCGCTCGCTGCTGCTTGCTGCACTGCTGCTGCCGCTGATCCTGATACTGGTGCCCGG CCGGGCCGTGCATGCCGCGCCGGCAAACCCGCTGGCCGCCGCGATCAGGCAGGCCGATGCCCAGAATGCGCCAGCCAGTG CCCCGCTCGCCCAGTCGCTTGACCAGGTCATCGTCACGCTACAGGACGACACGCAGCGCAAAGCGCTGCTCGAACAACTG CAAGCACTGCGCAGTGGATTGAATGCCTCGGCGTCCGCACCGGTCGCGGCCGCCTCGTCGCCAGGACTGATCGGCGCCGT TGCGCAGGCACTCGATGAAGTCGATACGCATCTTCGCAAGGACCACGGCCCTTGGCACTACTGGCGCTGGCGTTCGCAGT TTGCCGCCGAGGAATGGCGGGACGGCGCGACGCTCCAAGGCACGCGTTCCGGTCTAGTTTCCCTGCGCGAGTTCGCCGCG GTCATCGGCGGCTGGGCGCTGTGCGGCTGGCTCTTGTGGGAAATCGGCCACCGCATCCGCGTGCGCCGCCGCATACGTGC CGAAACCACCGTCGCGCTGGTGCGCAAGCCGCGCGCCGGCTTGCCCGACGTGCCGTCCTGGATGGATGTCGGCATCTATA TGCTGCGGCGCATCGGACCGTGGATAGCCGCGTTCGGGCTCACGGTACTGCTCGCGTATCGTCATTATTCGCAGTCGCCG GCCAGCATGGCCGCCGTGATGGTGGCCCATGCCATCGTGGCCGGCGCCATCGCCAGCGCGGTCTGCCAGGTTATCTTCGC GCTGTTCCGCACCGCACATCGCCGCACGGCGGTACGCCAGTTGCTGGTGCACTCGCCGTGGCTGCTGTTCTGCACCGGCG CGCTGGCCGCACTCGGCAACAGCGCGACAGATCCCCGCATTACGACCACGCTCGGCACCAATCTGAGCGCCTTGATTTCG ACAGGCGCCAACGTGGCAGCCGCGATCCTGATCGGCGTGTTCGCGCTGCGCTTCCGGCGCCAGGTGGGCCAGCTTATCGC GCAGCGTCCGCTCGAATTCCGCCAGTCGCATCCGGCCATGACGGACCTGCTGCGCCTGGCCGGCCAGGCCTGGCATCTGC CCGTGCTCGCCGTGGTCGTGGCATCGGTGATCGGCACCGTGCTGGCCGCCGGCCATGCCGATGTTTTCCTGCGCCGCACG GTGGCCTCGGTGTCGCTGTTCGTTGTCGCGCTGTTGCTGACATTGATCGCAGGCCGGTCCCCGAAGGCGAAGGTGCGTGC GCCGCGCATCCGCGACCGGCGGCGTTCCGCCTATCTGGAGCGCTTCGGCCGCTTCGCCATGGCGCTGGTGCGCGTGGTGA TATGGATCTCCGTGATCGAACTGGGCACGCGCATCTGGGGGACGTCGGTGCTCCATCTGGTCGAAGCCTCGCCCGCGGGC CGGCACATTGCGGAGTCCGTGCTGAGCGTGACCGCCACAGTGCTGCTCGCGTGGCTGGTCTGGCTGCTGATCGACACGGC CATCACGCAGGCGCTGTCGCCTACATACGGCCGGGCCGCGCAGCCCAGCATGCGCGCCAAGACCATCCTGCCGCTGGTGC GCAATGCGTCATTCGTGGCGCTGCTGGTCATCGCGATGATGGTGGTGCTGGCCAATCTCGGGGTCAATGTCACCCCGCTG CTCGCGGGTGCCGGCGTGGTCGGCCTGGCGATCGGGTTCGGCGCTCAGAGCCTGGTCCAGGACCTGATCACGGGGCTGTT CATCGTGATCGAGGACTCCATTGCCATTGGCGACTCCATCGAACTGCCCGACCATGCCGGCGTGGTCGAAGGCATGACCA TCCGGACCGTCAAGCTGCGCGACGGCAAGGGCGCGCTGCACACGCTGCCGTACAGCCAGATCAAGGCTGTGAAGAACCTG TCCCGCGGGTATGGCTATGCGGTCTTCAACATTGGCATCGCCTACCAGAGCGACCTGGACCGCGCGCTGGAACTGATCCG GACCACCGGCGCCCAGATCGCGCACGACCACCGCTACTCCCACAAGCTGTTGTCCGGCCTGGACATCCTGGGCCTGGACC GCTTCGACCCGAGCGGCCCGGTGGTGCTGGCGCAGTTCAAGACCCGCCCGCTGATGCAGGCGGAAATCACGCGCGCGTTC AACGCCCTGCTCAAGCGGCAGTTCGACACCAACGGTATCCGCATGGCGTCGCCCAGCCTGACCATCCAGCTCGACGGCGG AACGGCCGGCGCGGCAAGCGTCGAAGCCGTCATGCCGCGTACTGAATGA
Upstream 100 bases:
>100_bases GAACACAGAACCATCCGCATGCCAACTTGGGGACCGGCAAGGGGCCAATGCGCTACAGTGTCGCGCATGGACGGCCTGCC CATGACGCGGCTCCTGACCC
Downstream 100 bases:
>100_bases GATTCTTAAATCACGCAGAAACGGGTACGTTGTCGCTTTTGAGAAACGCGGCTGTCACTTTGACGTCGAAATTTCTTCAT GACTCGGTATAGCGCATTAA
Product: mechanosensitive ion channel MscS
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 762; Mature: 762
Protein sequence:
>762_residues MRPFTPDARSLLLAALLLPLILILVPGRAVHAAPANPLAAAIRQADAQNAPASAPLAQSLDQVIVTLQDDTQRKALLEQL QALRSGLNASASAPVAAASSPGLIGAVAQALDEVDTHLRKDHGPWHYWRWRSQFAAEEWRDGATLQGTRSGLVSLREFAA VIGGWALCGWLLWEIGHRIRVRRRIRAETTVALVRKPRAGLPDVPSWMDVGIYMLRRIGPWIAAFGLTVLLAYRHYSQSP ASMAAVMVAHAIVAGAIASAVCQVIFALFRTAHRRTAVRQLLVHSPWLLFCTGALAALGNSATDPRITTTLGTNLSALIS TGANVAAAILIGVFALRFRRQVGQLIAQRPLEFRQSHPAMTDLLRLAGQAWHLPVLAVVVASVIGTVLAAGHADVFLRRT VASVSLFVVALLLTLIAGRSPKAKVRAPRIRDRRRSAYLERFGRFAMALVRVVIWISVIELGTRIWGTSVLHLVEASPAG RHIAESVLSVTATVLLAWLVWLLIDTAITQALSPTYGRAAQPSMRAKTILPLVRNASFVALLVIAMMVVLANLGVNVTPL LAGAGVVGLAIGFGAQSLVQDLITGLFIVIEDSIAIGDSIELPDHAGVVEGMTIRTVKLRDGKGALHTLPYSQIKAVKNL SRGYGYAVFNIGIAYQSDLDRALELIRTTGAQIAHDHRYSHKLLSGLDILGLDRFDPSGPVVLAQFKTRPLMQAEITRAF NALLKRQFDTNGIRMASPSLTIQLDGGTAGAASVEAVMPRTE
Sequences:
>Translated_762_residues MRPFTPDARSLLLAALLLPLILILVPGRAVHAAPANPLAAAIRQADAQNAPASAPLAQSLDQVIVTLQDDTQRKALLEQL QALRSGLNASASAPVAAASSPGLIGAVAQALDEVDTHLRKDHGPWHYWRWRSQFAAEEWRDGATLQGTRSGLVSLREFAA VIGGWALCGWLLWEIGHRIRVRRRIRAETTVALVRKPRAGLPDVPSWMDVGIYMLRRIGPWIAAFGLTVLLAYRHYSQSP ASMAAVMVAHAIVAGAIASAVCQVIFALFRTAHRRTAVRQLLVHSPWLLFCTGALAALGNSATDPRITTTLGTNLSALIS TGANVAAAILIGVFALRFRRQVGQLIAQRPLEFRQSHPAMTDLLRLAGQAWHLPVLAVVVASVIGTVLAAGHADVFLRRT VASVSLFVVALLLTLIAGRSPKAKVRAPRIRDRRRSAYLERFGRFAMALVRVVIWISVIELGTRIWGTSVLHLVEASPAG RHIAESVLSVTATVLLAWLVWLLIDTAITQALSPTYGRAAQPSMRAKTILPLVRNASFVALLVIAMMVVLANLGVNVTPL LAGAGVVGLAIGFGAQSLVQDLITGLFIVIEDSIAIGDSIELPDHAGVVEGMTIRTVKLRDGKGALHTLPYSQIKAVKNL SRGYGYAVFNIGIAYQSDLDRALELIRTTGAQIAHDHRYSHKLLSGLDILGLDRFDPSGPVVLAQFKTRPLMQAEITRAF NALLKRQFDTNGIRMASPSLTIQLDGGTAGAASVEAVMPRTE >Mature_762_residues MRPFTPDARSLLLAALLLPLILILVPGRAVHAAPANPLAAAIRQADAQNAPASAPLAQSLDQVIVTLQDDTQRKALLEQL QALRSGLNASASAPVAAASSPGLIGAVAQALDEVDTHLRKDHGPWHYWRWRSQFAAEEWRDGATLQGTRSGLVSLREFAA VIGGWALCGWLLWEIGHRIRVRRRIRAETTVALVRKPRAGLPDVPSWMDVGIYMLRRIGPWIAAFGLTVLLAYRHYSQSP ASMAAVMVAHAIVAGAIASAVCQVIFALFRTAHRRTAVRQLLVHSPWLLFCTGALAALGNSATDPRITTTLGTNLSALIS TGANVAAAILIGVFALRFRRQVGQLIAQRPLEFRQSHPAMTDLLRLAGQAWHLPVLAVVVASVIGTVLAAGHADVFLRRT VASVSLFVVALLLTLIAGRSPKAKVRAPRIRDRRRSAYLERFGRFAMALVRVVIWISVIELGTRIWGTSVLHLVEASPAG RHIAESVLSVTATVLLAWLVWLLIDTAITQALSPTYGRAAQPSMRAKTILPLVRNASFVALLVIAMMVVLANLGVNVTPL LAGAGVVGLAIGFGAQSLVQDLITGLFIVIEDSIAIGDSIELPDHAGVVEGMTIRTVKLRDGKGALHTLPYSQIKAVKNL SRGYGYAVFNIGIAYQSDLDRALELIRTTGAQIAHDHRYSHKLLSGLDILGLDRFDPSGPVVLAQFKTRPLMQAEITRAF NALLKRQFDTNGIRMASPSLTIQLDGGTAGAASVEAVMPRTE
Specific function: Unknown
COG id: COG0668
COG function: function code M; Small-conductance mechanosensitive channel
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mscS (TC 1.A.23) family [H]
Homologues:
Organism=Escherichia coli, GI87081787, Length=451, Percent_Identity=27.9379157427938, Blast_Score=140, Evalue=2e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010920 - InterPro: IPR011066 - InterPro: IPR006685 - InterPro: IPR011014 [H]
Pfam domain/function: PF00924 MS_channel [H]
EC number: NA
Molecular weight: Translated: 81943; Mature: 81943
Theoretical pI: Translated: 11.30; Mature: 11.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPFTPDARSLLLAALLLPLILILVPGRAVHAAPANPLAAAIRQADAQNAPASAPLAQSL CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHCCCCCCCCHHHHHH DQVIVTLQDDTQRKALLEQLQALRSGLNASASAPVAAASSPGLIGAVAQALDEVDTHLRK HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH DHGPWHYWRWRSQFAAEEWRDGATLQGTRSGLVSLREFAAVIGGWALCGWLLWEIGHRIR CCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VRRRIRAETTVALVRKPRAGLPDVPSWMDVGIYMLRRIGPWIAAFGLTVLLAYRHYSQSP HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH ASMAAVMVAHAIVAGAIASAVCQVIFALFRTAHRRTAVRQLLVHSPWLLFCTGALAALGN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC SATDPRITTTLGTNLSALISTGANVAAAILIGVFALRFRRQVGQLIAQRPLEFRQSHPAM CCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHH TDLLRLAGQAWHLPVLAVVVASVIGTVLAAGHADVFLRRTVASVSLFVVALLLTLIAGRS HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC PKAKVRAPRIRDRRRSAYLERFGRFAMALVRVVIWISVIELGTRIWGTSVLHLVEASPAG CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH RHIAESVLSVTATVLLAWLVWLLIDTAITQALSPTYGRAAQPSMRAKTILPLVRNASFVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHH LLVIAMMVVLANLGVNVTPLLAGAGVVGLAIGFGAQSLVQDLITGLFIVIEDSIAIGDSI HHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHEEECCEECCCCC ELPDHAGVVEGMTIRTVKLRDGKGALHTLPYSQIKAVKNLSRGYGYAVFNIGIAYQSDLD CCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECHHHHHHHH RALELIRTTGAQIAHDHRYSHKLLSGLDILGLDRFDPSGPVVLAQFKTRPLMQAEITRAF HHHHHHHHCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCEEEEECCCCCHHHHHHHHHH NALLKRQFDTNGIRMASPSLTIQLDGGTAGAASVEAVMPRTE HHHHHHHCCCCCEEEECCCEEEEECCCCCCCCHHHHHCCCCC >Mature Secondary Structure MRPFTPDARSLLLAALLLPLILILVPGRAVHAAPANPLAAAIRQADAQNAPASAPLAQSL CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHCCCCCCCCHHHHHH DQVIVTLQDDTQRKALLEQLQALRSGLNASASAPVAAASSPGLIGAVAQALDEVDTHLRK HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH DHGPWHYWRWRSQFAAEEWRDGATLQGTRSGLVSLREFAAVIGGWALCGWLLWEIGHRIR CCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VRRRIRAETTVALVRKPRAGLPDVPSWMDVGIYMLRRIGPWIAAFGLTVLLAYRHYSQSP HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH ASMAAVMVAHAIVAGAIASAVCQVIFALFRTAHRRTAVRQLLVHSPWLLFCTGALAALGN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC SATDPRITTTLGTNLSALISTGANVAAAILIGVFALRFRRQVGQLIAQRPLEFRQSHPAM CCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHH TDLLRLAGQAWHLPVLAVVVASVIGTVLAAGHADVFLRRTVASVSLFVVALLLTLIAGRS HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC PKAKVRAPRIRDRRRSAYLERFGRFAMALVRVVIWISVIELGTRIWGTSVLHLVEASPAG CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH RHIAESVLSVTATVLLAWLVWLLIDTAITQALSPTYGRAAQPSMRAKTILPLVRNASFVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHH LLVIAMMVVLANLGVNVTPLLAGAGVVGLAIGFGAQSLVQDLITGLFIVIEDSIAIGDSI HHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHEEECCEECCCCC ELPDHAGVVEGMTIRTVKLRDGKGALHTLPYSQIKAVKNLSRGYGYAVFNIGIAYQSDLD CCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECHHHHHHHH RALELIRTTGAQIAHDHRYSHKLLSGLDILGLDRFDPSGPVVLAQFKTRPLMQAEITRAF HHHHHHHHCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCEEEEECCCCCHHHHHHHHHH NALLKRQFDTNGIRMASPSLTIQLDGGTAGAASVEAVMPRTE HHHHHHHCCCCCEEEECCCEEEEECCCCCCCCHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]