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The map label for this gene is yfdE [H]

Identifier: 73537395

GI number: 73537395

Start: 112955

End: 114178

Strand: Reverse

Name: yfdE [H]

Synonym: Reut_B3560

Alternate gene names: 73537395

Gene position: 114178-112955 (Counterclockwise)

Preceding gene: 73537397

Following gene: 73537394

Centisome position: 4.19

GC content: 68.14

Gene sequence:

>1224_bases
ATGCTGCCCTTAGCAGGCATCCGCGTGATCGACCTTTCCACGGTCGTGATGGGCCCCTACGCGAGCCAGTGGCTGGCCGA
CCTTGGTGCCGAGGTCATCAAGGTCGAGCCGCCCGAAGGCGACTCCACCCGGCGTACCGGCCCGGCCGCCGAAGCCGGCA
TGGCCGCCATCTTCCTCGGCGTGAACCGCAGCAAGAAGAGCATCGTGCTCGACCTGAAGCAGCCCGCCGCGCAGGAAGCG
CTGGACCGCCTGCTGTCCGGCGCGGACGTGCTGATGCACAGCATGCGCCCGCAGAAGCTGGCCGCGCTGGGCCTGGCTCC
GGCCAATGTGAAGGCACGCCATCCGCAACTGGTCTACGTGAGTCTGCTGGGCTTTGCCGAGGAAGGCCCGTACGGCGGAC
GCCCTGCCTACGACGACATCATCCAGGGACTTGCCGGCAACGCCGCGCTGATGGCGGCGCAGACCGGCAGCAGCCGCTAT
TTCCCGACCATTGCCGCCGACAAGACCAGCGGACTGGTGGCAGCTCTGTCAATATGCGCGGCACTGGCCGGCCGTGCGCG
CGGCGACGGACAGGGCACGATGGTCGAGGTGCCGATGTTCGAATCGATGGTCGCGTTCAACCTGGTCGAGCACTTCTATG
GCCGGCATTTCGAGCCGCCGCGTGGGGGCACCGGTTATCCGCGCGTGCTGGCGCCGCTGCGCCGCCCATACCAGAGCGCC
GACGGCCATGTCTGCATGATGCCGTACACCGATGCCCACTGGCGCGACTTCTTCCGCGCCGCCGGCCGCCCCGAACTGGC
CGCCGATGCGCGCTTCACCGATATCTCCGCGCGCACCGCGAACATCGAGACGCTGTACGAGATCACGGGCGAAATCGTGG
GCGGGCACAGTACCGCGCATTGGCTGGAGCTATGCGAATCCCTGCAGATTCCGGTGGCACGGATCAACGAACTCGACGAC
CTGCCCGACGATCCGCACCTTCGCGCGACCGGCTTTTTCGAGCCGGTTGAAGACGCCGCGATGGGCACGCTGCGCTTTCC
CGGTGCGCCGGTGCGCTTCGACGGCACGCGCGCGCCGATCGGCGTGCCGCCGCGCCTCGGCGAGCACAGCGCGGAGCTGC
TGGCGCAGGCCGGCCTGACACAGCAGGACATTGACGGGCTATATGCCACGGGCGCCGCCCGCGGTACTTCCGGCAGCAAG
AACGACACCAAGGAGACAGCATGA

Upstream 100 bases:

>100_bases
CGATATCCAGTGAATATCAGTTTCTAAAAAACTAATATTAGACCAGACATGTCCCGGTGATCTACGCTGTGCTCCACAGT
AAAGATCCGGAGACAGACGC

Downstream 100 bases:

>100_bases
CGAAAAGCGACCTGCCGCGGCTCGGCCAGGGCTTCTACTGGCAGGACCTGAAGGAAGGCCAGGCCTTCCGGACTTTCCGC
CGCACCGTCACCGAGACCGA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MLPLAGIRVIDLSTVVMGPYASQWLADLGAEVIKVEPPEGDSTRRTGPAAEAGMAAIFLGVNRSKKSIVLDLKQPAAQEA
LDRLLSGADVLMHSMRPQKLAALGLAPANVKARHPQLVYVSLLGFAEEGPYGGRPAYDDIIQGLAGNAALMAAQTGSSRY
FPTIAADKTSGLVAALSICAALAGRARGDGQGTMVEVPMFESMVAFNLVEHFYGRHFEPPRGGTGYPRVLAPLRRPYQSA
DGHVCMMPYTDAHWRDFFRAAGRPELAADARFTDISARTANIETLYEITGEIVGGHSTAHWLELCESLQIPVARINELDD
LPDDPHLRATGFFEPVEDAAMGTLRFPGAPVRFDGTRAPIGVPPRLGEHSAELLAQAGLTQQDIDGLYATGAARGTSGSK
NDTKETA

Sequences:

>Translated_407_residues
MLPLAGIRVIDLSTVVMGPYASQWLADLGAEVIKVEPPEGDSTRRTGPAAEAGMAAIFLGVNRSKKSIVLDLKQPAAQEA
LDRLLSGADVLMHSMRPQKLAALGLAPANVKARHPQLVYVSLLGFAEEGPYGGRPAYDDIIQGLAGNAALMAAQTGSSRY
FPTIAADKTSGLVAALSICAALAGRARGDGQGTMVEVPMFESMVAFNLVEHFYGRHFEPPRGGTGYPRVLAPLRRPYQSA
DGHVCMMPYTDAHWRDFFRAAGRPELAADARFTDISARTANIETLYEITGEIVGGHSTAHWLELCESLQIPVARINELDD
LPDDPHLRATGFFEPVEDAAMGTLRFPGAPVRFDGTRAPIGVPPRLGEHSAELLAQAGLTQQDIDGLYATGAARGTSGSK
NDTKETA
>Mature_407_residues
MLPLAGIRVIDLSTVVMGPYASQWLADLGAEVIKVEPPEGDSTRRTGPAAEAGMAAIFLGVNRSKKSIVLDLKQPAAQEA
LDRLLSGADVLMHSMRPQKLAALGLAPANVKARHPQLVYVSLLGFAEEGPYGGRPAYDDIIQGLAGNAALMAAQTGSSRY
FPTIAADKTSGLVAALSICAALAGRARGDGQGTMVEVPMFESMVAFNLVEHFYGRHFEPPRGGTGYPRVLAPLRRPYQSA
DGHVCMMPYTDAHWRDFFRAAGRPELAADARFTDISARTANIETLYEITGEIVGGHSTAHWLELCESLQIPVARINELDD
LPDDPHLRATGFFEPVEDAAMGTLRFPGAPVRFDGTRAPIGVPPRLGEHSAELLAQAGLTQQDIDGLYATGAARGTSGSK
NDTKETA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=382, Percent_Identity=28.2722513089005, Blast_Score=170, Evalue=3e-42,
Organism=Homo sapiens, GI300863124, Length=408, Percent_Identity=26.9607843137255, Blast_Score=157, Evalue=2e-38,
Organism=Homo sapiens, GI300863126, Length=380, Percent_Identity=26.8421052631579, Blast_Score=145, Evalue=7e-35,
Organism=Homo sapiens, GI13376042, Length=408, Percent_Identity=24.5098039215686, Blast_Score=123, Evalue=4e-28,
Organism=Homo sapiens, GI266456254, Length=394, Percent_Identity=25.3807106598985, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI42794625, Length=391, Percent_Identity=25.3196930946292, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI266458397, Length=251, Percent_Identity=31.0756972111554, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI266458393, Length=251, Percent_Identity=31.0756972111554, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI266458395, Length=147, Percent_Identity=32.6530612244898, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI42822893, Length=147, Percent_Identity=32.6530612244898, Blast_Score=77, Evalue=4e-14,
Organism=Escherichia coli, GI87082093, Length=370, Percent_Identity=29.4594594594595, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1788717, Length=411, Percent_Identity=25.7907542579075, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1786222, Length=408, Percent_Identity=24.5098039215686, Blast_Score=86, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=244, Percent_Identity=24.5901639344262, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI115535051, Length=245, Percent_Identity=24.8979591836735, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24648431, Length=382, Percent_Identity=31.9371727748691, Blast_Score=186, Evalue=3e-47,
Organism=Drosophila melanogaster, GI24585488, Length=201, Percent_Identity=30.3482587064677, Blast_Score=95, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43385; Mature: 43385

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPLAGIRVIDLSTVVMGPYASQWLADLGAEVIKVEPPEGDSTRRTGPAAEAGMAAIFLG
CCCCCCEEEEEEHHHEECCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHCCEEEEEE
VNRSKKSIVLDLKQPAAQEALDRLLSGADVLMHSMRPQKLAALGLAPANVKARHPQLVYV
CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEEEE
SLLGFAEEGPYGGRPAYDDIIQGLAGNAALMAAQTGSSRYFPTIAADKTSGLVAALSICA
EEEHHHCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCEEECCCCCHHHHHHHHHH
ALAGRARGDGQGTMVEVPMFESMVAFNLVEHFYGRHFEPPRGGTGYPRVLAPLRRPYQSA
HHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHCC
DGHVCMMPYTDAHWRDFFRAAGRPELAADARFTDISARTANIETLYEITGEIVGGHSTAH
CCCEEEECCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCHHH
WLELCESLQIPVARINELDDLPDDPHLRATGFFEPVEDAAMGTLRFPGAPVRFDGTRAPI
HHHHHHHCCCCHHHHHHHHCCCCCCCEEECCCCCCHHHHHCCEEECCCCCEEECCCCCCC
GVPPRLGEHSAELLAQAGLTQQDIDGLYATGAARGTSGSKNDTKETA
CCCCCCCHHHHHHHHHHCCCHHHHCCCEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLPLAGIRVIDLSTVVMGPYASQWLADLGAEVIKVEPPEGDSTRRTGPAAEAGMAAIFLG
CCCCCCEEEEEEHHHEECCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHCCEEEEEE
VNRSKKSIVLDLKQPAAQEALDRLLSGADVLMHSMRPQKLAALGLAPANVKARHPQLVYV
CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEEEE
SLLGFAEEGPYGGRPAYDDIIQGLAGNAALMAAQTGSSRYFPTIAADKTSGLVAALSICA
EEEHHHCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCEEECCCCCHHHHHHHHHH
ALAGRARGDGQGTMVEVPMFESMVAFNLVEHFYGRHFEPPRGGTGYPRVLAPLRRPYQSA
HHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHCC
DGHVCMMPYTDAHWRDFFRAAGRPELAADARFTDISARTANIETLYEITGEIVGGHSTAH
CCCEEEECCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCHHH
WLELCESLQIPVARINELDDLPDDPHLRATGFFEPVEDAAMGTLRFPGAPVRFDGTRAPI
HHHHHHHCCCCHHHHHHHHCCCCCCCEEECCCCCCHHHHHCCEEECCCCCEEECCCCCCC
GVPPRLGEHSAELLAQAGLTQQDIDGLYATGAARGTSGSKNDTKETA
CCCCCCCHHHHHHHHHHCCCHHHHCCCEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]