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The map label for this gene is rarD [H]

Identifier: 73543077

GI number: 73543077

Start: 3722772

End: 3723677

Strand: Reverse

Name: rarD [H]

Synonym: Reut_A3395

Alternate gene names: 73543077

Gene position: 3723677-3722772 (Counterclockwise)

Preceding gene: 73543078

Following gene: 73543076

Centisome position: 97.82

GC content: 64.9

Gene sequence:

>906_bases
ATGCAACTCGGCATCCTTTACGCGCTCCTGGCCTACATCATCTGGGGGCTGCTCCCGCTTTACATCAAATCGCTGCCAGG
CATCGCGCCGGCCGAAATCCTGCTGCACCGGATGGTGTGGTCGCTGGCGTTCCTGGCCATCATCCTGGCCAGCCGGCGCC
AGTGGGCATGGCTCGGCAAGGTCGTGACGGACCGGCGCCTGCTGGTGTCGTTTGCCGCCAGCGCCGCGCTGTTGTGCGGC
AACTGGTTTCTTTATATCTGGGCCGTGTCCGCCAACCGCGTGGTCGACGCGAGCCTCGGCTATTTCATCAACCCGCTGTT
CAGTGTGCTGCTCGGCGTGATGTTCCTGCATGAACGCCTGCGGCCGGGACAGTGGCTGTCGATCGTGGTCGCCGCCGCTG
GCGTCGCCTGGCTGACGGTTGCGTCGGGCCAGCTTCCGTGGATTGCGCTGGCACTGGCCGCCACCTTCGGCGGTTACGGT
CTGCTGCGCAAGACGGGCGCGCTTGGCGCGCTGGAAGGGCTGTCGCTCGAGACACTGCTGCTGTTCCCGATCGCCGCCGC
TGCGCTTGGCTACCTGTTTGCAACGGGTCAGGACGGCTTCCGGCACGCAGCACCAGGTACACAATGCCTGCTGTTGATGG
CCGGCCCGGTCACCGCCGTGCCGCTGCTGTTCTTTGCCGCCGGCGCCCGCCGGATTCCGTTGTCGCTGCTTGGATTGCTC
CAGTACACGGGCCCGACGCTGCAACTACTGCTTGGCGTGTGGCTGTGGCACGAACCGTTTCCGCCTCAGAAGCAGCTTGG
CTACGCGCTGATCTGGGTATCGCTGGCCTTGTACGCAGCGGAAGGGCTGTGGATCACGGCGCGGCAGAGGTCGACTTCTA
TCAGCGCGAAAGATGAAGTGGCTTAA

Upstream 100 bases:

>100_bases
GGTTTTTGCTTGGTGCGCCTGGCATGCCGCCGCATTGCGGGCGCCGGCAACAAAACACCCTCGCCGGTAGAATCGCGCGC
AGCATCTACCGGAATTTTCC

Downstream 100 bases:

>100_bases
TAATGAACCCGTGTGATTCATCGTATAGATGAAATTGGCTACGAAATCATTACTGCGTCGGCAGTTTTCATCGACGCCAT
TAATCACACACAAGACAATC

Product: RarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MQLGILYALLAYIIWGLLPLYIKSLPGIAPAEILLHRMVWSLAFLAIILASRRQWAWLGKVVTDRRLLVSFAASAALLCG
NWFLYIWAVSANRVVDASLGYFINPLFSVLLGVMFLHERLRPGQWLSIVVAAAGVAWLTVASGQLPWIALALAATFGGYG
LLRKTGALGALEGLSLETLLLFPIAAAALGYLFATGQDGFRHAAPGTQCLLLMAGPVTAVPLLFFAAGARRIPLSLLGLL
QYTGPTLQLLLGVWLWHEPFPPQKQLGYALIWVSLALYAAEGLWITARQRSTSISAKDEVA

Sequences:

>Translated_301_residues
MQLGILYALLAYIIWGLLPLYIKSLPGIAPAEILLHRMVWSLAFLAIILASRRQWAWLGKVVTDRRLLVSFAASAALLCG
NWFLYIWAVSANRVVDASLGYFINPLFSVLLGVMFLHERLRPGQWLSIVVAAAGVAWLTVASGQLPWIALALAATFGGYG
LLRKTGALGALEGLSLETLLLFPIAAAALGYLFATGQDGFRHAAPGTQCLLLMAGPVTAVPLLFFAAGARRIPLSLLGLL
QYTGPTLQLLLGVWLWHEPFPPQKQLGYALIWVSLALYAAEGLWITARQRSTSISAKDEVA
>Mature_301_residues
MQLGILYALLAYIIWGLLPLYIKSLPGIAPAEILLHRMVWSLAFLAIILASRRQWAWLGKVVTDRRLLVSFAASAALLCG
NWFLYIWAVSANRVVDASLGYFINPLFSVLLGVMFLHERLRPGQWLSIVVAAAGVAWLTVASGQLPWIALALAATFGGYG
LLRKTGALGALEGLSLETLLLFPIAAAALGYLFATGQDGFRHAAPGTQCLLLMAGPVTAVPLLFFAAGARRIPLSLLGLL
QYTGPTLQLLLGVWLWHEPFPPQKQLGYALIWVSLALYAAEGLWITARQRSTSISAKDEVA

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=293, Percent_Identity=43.0034129692833, Blast_Score=220, Evalue=8e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32620; Mature: 32620

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLGILYALLAYIIWGLLPLYIKSLPGIAPAEILLHRMVWSLAFLAIILASRRQWAWLGK
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
VVTDRRLLVSFAASAALLCGNWFLYIWAVSANRVVDASLGYFINPLFSVLLGVMFLHERL
HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHC
RPGQWLSIVVAAAGVAWLTVASGQLPWIALALAATFGGYGLLRKTGALGALEGLSLETLL
CCCHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHCCHHHHHHCCCCHHHCCCCHHHHH
LFPIAAAALGYLFATGQDGFRHAAPGTQCLLLMAGPVTAVPLLFFAAGARRIPLSLLGLL
HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHH
QYTGPTLQLLLGVWLWHEPFPPQKQLGYALIWVSLALYAAEGLWITARQRSTSISAKDEV
HHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
A
C
>Mature Secondary Structure
MQLGILYALLAYIIWGLLPLYIKSLPGIAPAEILLHRMVWSLAFLAIILASRRQWAWLGK
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
VVTDRRLLVSFAASAALLCGNWFLYIWAVSANRVVDASLGYFINPLFSVLLGVMFLHERL
HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHC
RPGQWLSIVVAAAGVAWLTVASGQLPWIALALAATFGGYGLLRKTGALGALEGLSLETLL
CCCHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHCCHHHHHHCCCCHHHCCCCHHHHH
LFPIAAAALGYLFATGQDGFRHAAPGTQCLLLMAGPVTAVPLLFFAAGARRIPLSLLGLL
HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHH
QYTGPTLQLLLGVWLWHEPFPPQKQLGYALIWVSLALYAAEGLWITARQRSTSISAKDEV
HHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1379743; 9278503 [H]