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The map label for this gene is ompW [H]

Identifier: 73543060

GI number: 73543060

Start: 3698715

End: 3699440

Strand: Reverse

Name: ompW [H]

Synonym: Reut_A3378

Alternate gene names: 73543060

Gene position: 3699440-3698715 (Counterclockwise)

Preceding gene: 73543061

Following gene: 73543058

Centisome position: 97.19

GC content: 59.5

Gene sequence:

>726_bases
ATGAAATCGAACTATAAGAAGATGCTGGCGGCAGGCGCTGTCATGGCGCTGGCAGGTACGGCACAGGCGCAATCCGCGGG
CAGCAATATCGTGAGCCTGGGCTGGTTCCGCGTGATGCCGAACAGCTCGGCCGATCCGCTGACGGTGGACAGCATCAATG
GCCGTCCGGTCAATATGACCCGGGCAAACACGGGCGCCAGTATCGAGAGTGCCGATACGCTGGGTATCGCCTTCGAGCAT
TACTTCACGGACAACATCTCGGCCGAACTGGTCGCAGGCATTCCGCCCAAGCATGACGTCAAGGGCACCGGCGACTATGG
CCAATATGGCAAGCTGGGCTCGGTCAGGCAGTGGAGCCCGGCGGTGGTGGTGAAGTACCACTTCTTCGATGCCAAGACGA
AATTTCGTCCCTATGTCGGCCTGGGTGTGAACTACACCTGGTTCACGGACGAAACCATCACCAACCAGGACTTCGTCAAC
CACGCCTTCGGTATTCCCGGCGCCAAGATGACCGCCAATGCGGAAAGCTCGTGGAACCCGGTGTTCAACGTGGGCGCGAG
CTACGCCATCACTGACAACTGGTTCGTGGGCCTGTCGGTTTCCTACCTGCCCTTGTCTACCCGTGCCACCCTCACCACCC
AGGCGAACGGGGTGACGATCGTGTCGCACACCAAGATCAAGATCGATCCGGTGGTGACTTTCCTGAGCGTGGGCTACAAG
TTCTGA

Upstream 100 bases:

>100_bases
GGGGAGTCCTTCTACGAATCAGTGTCGTCGATGAAACAGTCCCGCTGCTGCAGGCCGGATAATGCCTCCGGCAGCAACCC
GAATGAGGAGTATGAGGACT

Downstream 100 bases:

>100_bases
TTTCCGTCAGGACGTATCCAGGAACGAAGAACGGGGCGCCTTGTGCGCCCCGTTTTCTTTGCTTCACTGGCAGGTTGCAG
CGCGCTTTACGCCGCCGACT

Product: OmpW

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MKSNYKKMLAAGAVMALAGTAQAQSAGSNIVSLGWFRVMPNSSADPLTVDSINGRPVNMTRANTGASIESADTLGIAFEH
YFTDNISAELVAGIPPKHDVKGTGDYGQYGKLGSVRQWSPAVVVKYHFFDAKTKFRPYVGLGVNYTWFTDETITNQDFVN
HAFGIPGAKMTANAESSWNPVFNVGASYAITDNWFVGLSVSYLPLSTRATLTTQANGVTIVSHTKIKIDPVVTFLSVGYK
F

Sequences:

>Translated_241_residues
MKSNYKKMLAAGAVMALAGTAQAQSAGSNIVSLGWFRVMPNSSADPLTVDSINGRPVNMTRANTGASIESADTLGIAFEH
YFTDNISAELVAGIPPKHDVKGTGDYGQYGKLGSVRQWSPAVVVKYHFFDAKTKFRPYVGLGVNYTWFTDETITNQDFVN
HAFGIPGAKMTANAESSWNPVFNVGASYAITDNWFVGLSVSYLPLSTRATLTTQANGVTIVSHTKIKIDPVVTFLSVGYK
F
>Mature_241_residues
MKSNYKKMLAAGAVMALAGTAQAQSAGSNIVSLGWFRVMPNSSADPLTVDSINGRPVNMTRANTGASIESADTLGIAFEH
YFTDNISAELVAGIPPKHDVKGTGDYGQYGKLGSVRQWSPAVVVKYHFFDAKTKFRPYVGLGVNYTWFTDETITNQDFVN
HAFGIPGAKMTANAESSWNPVFNVGASYAITDNWFVGLSVSYLPLSTRATLTTQANGVTIVSHTKIKIDPVVTFLSVGYK
F

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=239, Percent_Identity=32.2175732217573, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 25980; Mature: 25980

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSNYKKMLAAGAVMALAGTAQAQSAGSNIVSLGWFRVMPNSSADPLTVDSINGRPVNMT
CCCHHHHHHHHHHHEEEECCCHHHHCCCCEEEEEEEEECCCCCCCCEEEECCCCCEEEEE
RANTGASIESADTLGIAFEHYFTDNISAELVAGIPPKHDVKGTGDYGQYGKLGSVRQWSP
ECCCCCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
AVVVKYHFFDAKTKFRPYVGLGVNYTWFTDETITNQDFVNHAFGIPGAKMTANAESSWNP
EEEEEEEEECCCCCCCCEEECCCEEEEECCCCCCCCHHHHHHCCCCCCEEEECCCCCCCC
VFNVGASYAITDNWFVGLSVSYLPLSTRATLTTQANGVTIVSHTKIKIDPVVTFLSVGYK
EEECCCCEEEECCEEEEEEEEEEECCCCEEEEECCCCEEEEEECEEEEHHHHEEECCCCC
F
C
>Mature Secondary Structure
MKSNYKKMLAAGAVMALAGTAQAQSAGSNIVSLGWFRVMPNSSADPLTVDSINGRPVNMT
CCCHHHHHHHHHHHEEEECCCHHHHCCCCEEEEEEEEECCCCCCCCEEEECCCCCEEEEE
RANTGASIESADTLGIAFEHYFTDNISAELVAGIPPKHDVKGTGDYGQYGKLGSVRQWSP
ECCCCCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
AVVVKYHFFDAKTKFRPYVGLGVNYTWFTDETITNQDFVNHAFGIPGAKMTANAESSWNP
EEEEEEEEECCCCCCCCEEECCCEEEEECCCCCCCCHHHHHHCCCCCCEEEECCCCCCCC
VFNVGASYAITDNWFVGLSVSYLPLSTRATLTTQANGVTIVSHTKIKIDPVVTFLSVGYK
EEECCCCEEEECCEEEEEEEEEEECCCCEEEEECCCCEEEEEECEEEEHHHHEEECCCCC
F
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2336399; 10952301 [H]