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The map label for this gene is rnk [H]

Identifier: 73542981

GI number: 73542981

Start: 3607771

End: 3608190

Strand: Reverse

Name: rnk [H]

Synonym: Reut_A3298

Alternate gene names: 73542981

Gene position: 3608190-3607771 (Counterclockwise)

Preceding gene: 73542982

Following gene: 73542980

Centisome position: 94.79

GC content: 69.05

Gene sequence:

>420_bases
ATGACGGCCACCAACCCGAGCGCACCGAACCTCTACCTGACCGAACTTGACGTCACGCGTCTGGAGCGCATTGCCAGCCG
CCCCGGCGCGGGCCCGATGGCCGACATGCTCGATGCGCTGCTCGCACGCGCGGCAATCGTCGCGCCGCAAGACATCCCGA
CCGATGTCGTCACCATGAACTCGCGCCTGGTCTGCGCGCTGCAGGGCGACGCGACGCCGCGCCTGTGGACGCTGGTCTAT
CCCGATGAAGCCGATTTCGATGCAGGCCGCCTGTCGGTGCTGTCGCCGGTCGGCCAGGCGCTGCTCGGCGCGCGCGCGGG
CGAGACCGTAAGCTATCGCCTGCCCGATGGCCGTGAGCAGCACGTCTCGGTGACCGAGATCACCTTCCAGCCCGAGGCCA
GCGGCCAGTACACGCTCTGA

Upstream 100 bases:

>100_bases
ACCTTTCTGATGTCCCCGCATGGCCCGGTGCCGGCATTGCCGCCCCGCGAGCTATGCCGGGCCAAACCTGATCACTACGA
CCCTTGATGGAGGATTAGCC

Downstream 100 bases:

>100_bases
CCCCTGTGCGACGGGCACCGCACGACATACGCGTGCGGGCCCGGACGCTCATGGGCTCATGGGCAGGGCCGCATGCGGGT
GGCGATCCACACGCACCGTT

Product: transcription elongation factor GreA/GreB region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MTATNPSAPNLYLTELDVTRLERIASRPGAGPMADMLDALLARAAIVAPQDIPTDVVTMNSRLVCALQGDATPRLWTLVY
PDEADFDAGRLSVLSPVGQALLGARAGETVSYRLPDGREQHVSVTEITFQPEASGQYTL

Sequences:

>Translated_139_residues
MTATNPSAPNLYLTELDVTRLERIASRPGAGPMADMLDALLARAAIVAPQDIPTDVVTMNSRLVCALQGDATPRLWTLVY
PDEADFDAGRLSVLSPVGQALLGARAGETVSYRLPDGREQHVSVTEITFQPEASGQYTL
>Mature_138_residues
TATNPSAPNLYLTELDVTRLERIASRPGAGPMADMLDALLARAAIVAPQDIPTDVVTMNSRLVCALQGDATPRLWTLVYP
DEADFDAGRLSVLSPVGQALLGARAGETVSYRLPDGREQHVSVTEITFQPEASGQYTL

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=135, Percent_Identity=42.962962962963, Blast_Score=106, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14882; Mature: 14751

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: PS00830 GREAB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATNPSAPNLYLTELDVTRLERIASRPGAGPMADMLDALLARAAIVAPQDIPTDVVTMN
CCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEC
SRLVCALQGDATPRLWTLVYPDEADFDAGRLSVLSPVGQALLGARAGETVSYRLPDGREQ
CEEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
HVSVTEITFQPEASGQYTL
CEEEEEEEECCCCCCCCCC
>Mature Secondary Structure 
TATNPSAPNLYLTELDVTRLERIASRPGAGPMADMLDALLARAAIVAPQDIPTDVVTMN
CCCCCCCCCEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEC
SRLVCALQGDATPRLWTLVYPDEADFDAGRLSVLSPVGQALLGARAGETVSYRLPDGREQ
CEEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
HVSVTEITFQPEASGQYTL
CEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]