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The map label for this gene is ltrA [H]

Identifier: 73542742

GI number: 73542742

Start: 3362249

End: 3363151

Strand: Direct

Name: ltrA [H]

Synonym: Reut_A3058

Alternate gene names: 73542742

Gene position: 3362249-3363151 (Clockwise)

Preceding gene: 73542737

Following gene: 73542743

Centisome position: 88.33

GC content: 67.11

Gene sequence:

>903_bases
ATGGACCTGAACCTGATCGAAGCGTTCGTCGACATCGTCGATGCCGGCAACCTGGCCGAGGCCGGCCGGCGGCGTGGTGT
GACGCGCTCCCAGGTGAGCCGCCAGTTGCGCGAACTGGAGCAACAGGCCGGTGCGCAACTGCTGCGGCGGACCACACGCA
GGCTGGAGATGACCGAACCCGGCCAGGCGCTCTACCAGCATGGGCTCCGCATTCTGCAGGAGGTGGCGTCCGCACAGGCC
GAGATCGACAGCCTCGGCAAGACGCTGCGCGGCCATGTGCGCGTCAGTATGCCCACGGGCCTTGGCGATACGTTCATCGC
CCCGCTGCTGCTGCAGTTTGCCCAGCGCTATCCCGGCATCACGTTGCGCGTGTTCTTCGCGAACCGCGTGGTGGACCTGA
TCGCGTCGGAAATCGACGTGGCGCTGCGCGTGACGTCGGCACCGCCGCTCGATCATGTGGCGCGCGAGATCTGTCCGATC
GACTGGCGGCTGTGCGCGTCTCCGGAGTACCTCGAACGCGTGCCGGCGCCACGCGTGCCGGTCGACCTCGCGCGCTGCCA
CTTCCTTTGCCCGCCCTATGGATCGCGCTTCCTGCTGGCGCTCAACCGCAATGGCCAGCGCGAGGAAGTGGAACTCGCGC
CGCACCTGCAATCGGAACACTTCCGCTTCCTGTTGCAGGCGGTGCTGGAAGGCCACGGCATCAGCCTGCTGCCGCGCTAC
ATGGGCTGGGAAGAGATGCGACAGGGCCGCCTGGTGCCTGTGCTGAGCGACTGGAAGCCCGAGGGGCTCGGCAGCAGCCT
CTATGTCATCACCACGCCGAGCCGGCATCCGACCATGGCCACGCGCGCGCTGATTGCGTTCCTGAAGGAGGAAATCGGCA
ACCTGCCGGTGTTCCGGGACTGA

Upstream 100 bases:

>100_bases
TGGCAGCGTTCCACTGTAGCCGCGCAGCCTGGCATCGACAATCCGCCGCACCGGAATCACAATGTTGCGCCTGACGTGAC
AATCCTGCAGGGAATCCCCG

Downstream 100 bases:

>100_bases
ACGGCGGCGCATTGGCACGCCAGAGAAAAGAACCCGGATCGTCCTGGGGGACCGACCCGGGTGGAGGAAACAGACGGCTA
GGCCTCCGCCTGATCGGCAC

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MDLNLIEAFVDIVDAGNLAEAGRRRGVTRSQVSRQLRELEQQAGAQLLRRTTRRLEMTEPGQALYQHGLRILQEVASAQA
EIDSLGKTLRGHVRVSMPTGLGDTFIAPLLLQFAQRYPGITLRVFFANRVVDLIASEIDVALRVTSAPPLDHVAREICPI
DWRLCASPEYLERVPAPRVPVDLARCHFLCPPYGSRFLLALNRNGQREEVELAPHLQSEHFRFLLQAVLEGHGISLLPRY
MGWEEMRQGRLVPVLSDWKPEGLGSSLYVITTPSRHPTMATRALIAFLKEEIGNLPVFRD

Sequences:

>Translated_300_residues
MDLNLIEAFVDIVDAGNLAEAGRRRGVTRSQVSRQLRELEQQAGAQLLRRTTRRLEMTEPGQALYQHGLRILQEVASAQA
EIDSLGKTLRGHVRVSMPTGLGDTFIAPLLLQFAQRYPGITLRVFFANRVVDLIASEIDVALRVTSAPPLDHVAREICPI
DWRLCASPEYLERVPAPRVPVDLARCHFLCPPYGSRFLLALNRNGQREEVELAPHLQSEHFRFLLQAVLEGHGISLLPRY
MGWEEMRQGRLVPVLSDWKPEGLGSSLYVITTPSRHPTMATRALIAFLKEEIGNLPVFRD
>Mature_300_residues
MDLNLIEAFVDIVDAGNLAEAGRRRGVTRSQVSRQLRELEQQAGAQLLRRTTRRLEMTEPGQALYQHGLRILQEVASAQA
EIDSLGKTLRGHVRVSMPTGLGDTFIAPLLLQFAQRYPGITLRVFFANRVVDLIASEIDVALRVTSAPPLDHVAREICPI
DWRLCASPEYLERVPAPRVPVDLARCHFLCPPYGSRFLLALNRNGQREEVELAPHLQSEHFRFLLQAVLEGHGISLLPRY
MGWEEMRQGRLVPVLSDWKPEGLGSSLYVITTPSRHPTMATRALIAFLKEEIGNLPVFRD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=290, Percent_Identity=31.7241379310345, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=25.9649122807018, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI145693193, Length=275, Percent_Identity=29.0909090909091, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=30.2721088435374, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787128, Length=293, Percent_Identity=26.6211604095563, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1787589, Length=265, Percent_Identity=24.9056603773585, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1789639, Length=187, Percent_Identity=26.7379679144385, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1787601, Length=304, Percent_Identity=22.6973684210526, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1789173, Length=260, Percent_Identity=26.5384615384615, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI157672245, Length=140, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788706, Length=178, Percent_Identity=28.6516853932584, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788297, Length=243, Percent_Identity=25.1028806584362, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1790783, Length=259, Percent_Identity=23.5521235521236, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788748, Length=118, Percent_Identity=33.0508474576271, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33753; Mature: 33753

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNLIEAFVDIVDAGNLAEAGRRRGVTRSQVSRQLRELEQQAGAQLLRRTTRRLEMTEP
CCHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GQALYQHGLRILQEVASAQAEIDSLGKTLRGHVRVSMPTGLGDTFIAPLLLQFAQRYPGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCC
TLRVFFANRVVDLIASEIDVALRVTSAPPLDHVAREICPIDWRLCASPEYLERVPAPRVP
EEEHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHCCCCCEECCCCHHHHHCCCCCCC
VDLARCHFLCPPYGSRFLLALNRNGQREEVELAPHLQSEHFRFLLQAVLEGHGISLLPRY
HHHHHHHEECCCCCCEEEEEECCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHH
MGWEEMRQGRLVPVLSDWKPEGLGSSLYVITTPSRHPTMATRALIAFLKEEIGNLPVFRD
CCHHHHHCCCCCEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDLNLIEAFVDIVDAGNLAEAGRRRGVTRSQVSRQLRELEQQAGAQLLRRTTRRLEMTEP
CCHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GQALYQHGLRILQEVASAQAEIDSLGKTLRGHVRVSMPTGLGDTFIAPLLLQFAQRYPGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCC
TLRVFFANRVVDLIASEIDVALRVTSAPPLDHVAREICPIDWRLCASPEYLERVPAPRVP
EEEHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHCCCCCEECCCCHHHHHCCCCCCC
VDLARCHFLCPPYGSRFLLALNRNGQREEVELAPHLQSEHFRFLLQAVLEGHGISLLPRY
HHHHHHHEECCCCCCEEEEEECCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHH
MGWEEMRQGRLVPVLSDWKPEGLGSSLYVITTPSRHPTMATRALIAFLKEEIGNLPVFRD
CCHHHHHCCCCCEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]