Click here to switch to the map view.

The map label for this gene is rnaSA [H]

Identifier: 73542531

GI number: 73542531

Start: 3118442

End: 3118858

Strand: Reverse

Name: rnaSA [H]

Synonym: Reut_A2846

Alternate gene names: 73542531

Gene position: 3118858-3118442 (Counterclockwise)

Preceding gene: 73542532

Following gene: 73542530

Centisome position: 81.93

GC content: 62.59

Gene sequence:

>417_bases
GTGATACAGCAGCGGCAACCGCTGCCCGTGCGCGGCCGGCGCTTGCTGGCGCAGGCGTTGTCAGGCATGGTCCTGGCATT
GGCCTTCATGCAGCCGTCGCTGGCCAGGCAGCAACAGGCCGAGGGACTGGCGGGAACCATTGCCGTGCAGCAACTGCCCA
ATGAGGCACGGCAGACGCTGGAGCGTATCGAGGCCGGCGGCCCGTTTCCCTACGAGAAGGACGGCACGCGATTCGGCAAC
TATGAACGCGCCCTCCCTCAACAACAACGCGGTTACTACCGCGAATATACGGTCAAGAGCCAGAACAGCCGGAACCGGGG
AGCAAAGCGGATCGTTTGCGGGGGCGACCAGCGCGCGGCGAACGACTGCTACTACACAGAAGACCACTACAACAGCTTCA
AACGGATAACCAAATGA

Upstream 100 bases:

>100_bases
GTAAGCCGGCCAGGGTGGCCCGGATACTTGTCTACCCAGCAGGCGGCAGGCTCGATTTCCGGTTCAACCAAGACAGACCA
ACGTGGGTTTCCAGATTCCC

Downstream 100 bases:

>100_bases
TGACTGACATTTTCGGATTGGGCGACGCCCTTGCCGCCCGCGAGGAGCGCGGCGCCGGAGATGGCTGGCAGCGGGCGCAG
CATCAGGCCCAGAACCTTTA

Product: guanine-specific ribonuclease N1 and T1

Products: NA

Alternate protein names: RNase Sa [H]

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MIQQRQPLPVRGRRLLAQALSGMVLALAFMQPSLARQQQAEGLAGTIAVQQLPNEARQTLERIEAGGPFPYEKDGTRFGN
YERALPQQQRGYYREYTVKSQNSRNRGAKRIVCGGDQRAANDCYYTEDHYNSFKRITK

Sequences:

>Translated_138_residues
MIQQRQPLPVRGRRLLAQALSGMVLALAFMQPSLARQQQAEGLAGTIAVQQLPNEARQTLERIEAGGPFPYEKDGTRFGN
YERALPQQQRGYYREYTVKSQNSRNRGAKRIVCGGDQRAANDCYYTEDHYNSFKRITK
>Mature_138_residues
MIQQRQPLPVRGRRLLAQALSGMVLALAFMQPSLARQQQAEGLAGTIAVQQLPNEARQTLERIEAGGPFPYEKDGTRFGN
YERALPQQQRGYYREYTVKSQNSRNRGAKRIVCGGDQRAANDCYYTEDHYNSFKRITK

Specific function: Unknown

COG id: COG4290

COG function: function code F; Guanyl-specific ribonuclease Sa

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonuclease N1/T1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000026
- InterPro:   IPR016191 [H]

Pfam domain/function: PF00545 Ribonuclease [H]

EC number: =3.1.27.3 [H]

Molecular weight: Translated: 15725; Mature: 15725

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQQRQPLPVRGRRLLAQALSGMVLALAFMQPSLARQQQAEGLAGTIAVQQLPNEARQTL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHCCHHHHHHH
ERIEAGGPFPYEKDGTRFGNYERALPQQQRGYYREYTVKSQNSRNRGAKRIVCGGDQRAA
HHHHCCCCCCCCCCCCCCCCHHHHCCHHHCCCHHHHCCCCCCCCCCCCCEEEECCCCCCC
NDCYYTEDHYNSFKRITK
CCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MIQQRQPLPVRGRRLLAQALSGMVLALAFMQPSLARQQQAEGLAGTIAVQQLPNEARQTL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHCCHHHHHHH
ERIEAGGPFPYEKDGTRFGNYERALPQQQRGYYREYTVKSQNSRNRGAKRIVCGGDQRAA
HHHHCCCCCCCCCCCCCCCCHHHHCCHHHCCCHHHHCCCCCCCCCCCCCEEEECCCCCCC
NDCYYTEDHYNSFKRITK
CCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3098582; 3118883; 1654932; 8396032; 9757110; 9819211; 11455593 [H]