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The map label for this gene is ycbY [C]

Identifier: 73542513

GI number: 73542513

Start: 3100102

End: 3101355

Strand: Reverse

Name: ycbY [C]

Synonym: Reut_A2828

Alternate gene names: 73542513

Gene position: 3101355-3100102 (Counterclockwise)

Preceding gene: 73542514

Following gene: 73542507

Centisome position: 81.47

GC content: 67.78

Gene sequence:

>1254_bases
ATGACCCAAGCTTTCTTTGCTCCCTGCCCGCGCGGCCTCGAGGGTGCGCTCGCCGAAGAACTGCGCGAGATTGCCGCGCG
GCCCGGCATGGCGGCGCTGGCCCCGTTCGAGGTGCATCGCGAGGTGCCGGGCGGTGTCAGTTTTTCGGGCGAGATGGCCG
CTGCCTACGCCGTCAACCTCCATTCGCGCATTGCCAGCCGCGTGCTGATGCGCGTGGCGGCGCGCGGCTACCGGCATGAG
GACGACATCTACTCGCTGGTGCGCAACCAGCGCTGGGAGCAGTGGTTCTCGCCCGACGAGTCGATTCGAGTGGACTTGAC
GGCCACCAAGTCGCCGCTGCGCAGCCTCAACTTCACGGCGCTGCGCATCAAGGATGGCGTCTGCGACGGCATGCGCGACC
GCGTCGGCGCGCGGCCGAGCGTCGATACGGTCAGCCCGGATGTGCGCATCTATGCCCACCTGACCGAGCACGACTGCACG
CTGTATCTCGACACGACCGGCGAGCCGCTGTTCAAGCGCGGATGGCGCATGGAGAAGGGCGAGGCGCCGCTGAAGGAGAA
TCTCGCGGCGGGTATCCTGCGCCTGGCCGGCTGGGTGCGCGGCCAGACCAACCTGCCGTTCTACGACCCGATGTGTGGCA
GCGGCACGTTCCTGATCGAAGCCGCGCAGGTGGCGCTGGATATCGCGCCGGGCGGCAGCCGCAGCTTTGCCTTCGAATGG
CTCAAGGGTGCGGACACCAAGTCCTGGCAGAAGCTGAAGTCGGACGCGCAGCGCGCGCGCATGCTGGCGTCGGCGGAGGG
CCTGCAGATCGCAGGCTCGGACATTTCCACCGACATGCTGGCCATGGCCCACGCTAACTGGGCGCGCGCCGGCTTGCCCG
GCGAAGCGCGTACCAAGCAGGTCGATGCGCGCTTTACGCAGCCGCCGTTCGCTGAACCGGGGCTGTTGATGATGAACCCG
CCGTACGGCGAACGAATCGTGGTGCGCGGCGACCGTCGTCAGCCACAGGCCGAAATGCCGCGCGACGAGGCCGAAGAGGC
CGCCGCCAACCAGTTCGCCAGCGCCTTTGCGACCACCCTCAAGCAGAACTTCGCCGGCTGGCAGGCGTGGGTCTTCACGG
GGGATCTGTCTATGCCGAAGCGGCTGCGCCTGAAAGAGTCGCGTCGCACGCCGCTTTACAACGGCAATATCGAATGCCGC
CTGTTCCGCTTCGATATGGTGCGGGGCGGCAACCGCGGGCCGCAGCCGGGCTGA

Upstream 100 bases:

>100_bases
TTCCTCGACCGCGCACTGGCGGCAGGCTGAACCGTCGGCTAGGCTAATCTGATCTCCCGTCCGCCACGGCGGACGTTTTT
GTTTGCAGGAACCCGAATCC

Downstream 100 bases:

>100_bases
GCGGTCCAATCGGCCCGGGCCGCCCGGGCGGCCGCGGCGTCAGGGGTGCTTGCGGCCGATCAGCGCGTCGGGATTGCGCG
TGAAATCGGCCAGGAAGGCC

Product: putative RNA methylase:THUMP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MTQAFFAPCPRGLEGALAEELREIAARPGMAALAPFEVHREVPGGVSFSGEMAAAYAVNLHSRIASRVLMRVAARGYRHE
DDIYSLVRNQRWEQWFSPDESIRVDLTATKSPLRSLNFTALRIKDGVCDGMRDRVGARPSVDTVSPDVRIYAHLTEHDCT
LYLDTTGEPLFKRGWRMEKGEAPLKENLAAGILRLAGWVRGQTNLPFYDPMCGSGTFLIEAAQVALDIAPGGSRSFAFEW
LKGADTKSWQKLKSDAQRARMLASAEGLQIAGSDISTDMLAMAHANWARAGLPGEARTKQVDARFTQPPFAEPGLLMMNP
PYGERIVVRGDRRQPQAEMPRDEAEEAAANQFASAFATTLKQNFAGWQAWVFTGDLSMPKRLRLKESRRTPLYNGNIECR
LFRFDMVRGGNRGPQPG

Sequences:

>Translated_417_residues
MTQAFFAPCPRGLEGALAEELREIAARPGMAALAPFEVHREVPGGVSFSGEMAAAYAVNLHSRIASRVLMRVAARGYRHE
DDIYSLVRNQRWEQWFSPDESIRVDLTATKSPLRSLNFTALRIKDGVCDGMRDRVGARPSVDTVSPDVRIYAHLTEHDCT
LYLDTTGEPLFKRGWRMEKGEAPLKENLAAGILRLAGWVRGQTNLPFYDPMCGSGTFLIEAAQVALDIAPGGSRSFAFEW
LKGADTKSWQKLKSDAQRARMLASAEGLQIAGSDISTDMLAMAHANWARAGLPGEARTKQVDARFTQPPFAEPGLLMMNP
PYGERIVVRGDRRQPQAEMPRDEAEEAAANQFASAFATTLKQNFAGWQAWVFTGDLSMPKRLRLKESRRTPLYNGNIECR
LFRFDMVRGGNRGPQPG
>Mature_416_residues
TQAFFAPCPRGLEGALAEELREIAARPGMAALAPFEVHREVPGGVSFSGEMAAAYAVNLHSRIASRVLMRVAARGYRHED
DIYSLVRNQRWEQWFSPDESIRVDLTATKSPLRSLNFTALRIKDGVCDGMRDRVGARPSVDTVSPDVRIYAHLTEHDCTL
YLDTTGEPLFKRGWRMEKGEAPLKENLAAGILRLAGWVRGQTNLPFYDPMCGSGTFLIEAAQVALDIAPGGSRSFAFEWL
KGADTKSWQKLKSDAQRARMLASAEGLQIAGSDISTDMLAMAHANWARAGLPGEARTKQVDARFTQPPFAEPGLLMMNPP
YGERIVVRGDRRQPQAEMPRDEAEEAAANQFASAFATTLKQNFAGWQAWVFTGDLSMPKRLRLKESRRTPLYNGNIECRL
FRFDMVRGGNRGPQPG

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=363, Percent_Identity=32.2314049586777, Blast_Score=175, Evalue=5e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 46263; Mature: 46132

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS51165 THUMP ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQAFFAPCPRGLEGALAEELREIAARPGMAALAPFEVHREVPGGVSFSGEMAAAYAVNL
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECHHHHHHCCCCCCCCCCCCHHHHHHHH
HSRIASRVLMRVAARGYRHEDDIYSLVRNQRWEQWFSPDESIRVDLTATKSPLRSLNFTA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHCCEEE
LRIKDGVCDGMRDRVGARPSVDTVSPDVRIYAHLTEHDCTLYLDTTGEPLFKRGWRMEKG
EEECCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCC
EAPLKENLAAGILRLAGWVRGQTNLPFYDPMCGSGTFLIEAAQVALDIAPGGSRSFAFEW
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHH
LKGADTKSWQKLKSDAQRARMLASAEGLQIAGSDISTDMLAMAHANWARAGLPGEARTKQ
HCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCHHHCCCCCCCHHHH
VDARFTQPPFAEPGLLMMNPPYGERIVVRGDRRQPQAEMPRDEAEEAAANQFASAFATTL
HCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCHHCCCHHHHHHHHHHHHHHHHHHHH
KQNFAGWQAWVFTGDLSMPKRLRLKESRRTPLYNGNIECRLFRFDMVRGGNRGPQPG
HHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCCCCCCC
>Mature Secondary Structure 
TQAFFAPCPRGLEGALAEELREIAARPGMAALAPFEVHREVPGGVSFSGEMAAAYAVNL
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECHHHHHHCCCCCCCCCCCCHHHHHHHH
HSRIASRVLMRVAARGYRHEDDIYSLVRNQRWEQWFSPDESIRVDLTATKSPLRSLNFTA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHCCEEE
LRIKDGVCDGMRDRVGARPSVDTVSPDVRIYAHLTEHDCTLYLDTTGEPLFKRGWRMEKG
EEECCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCC
EAPLKENLAAGILRLAGWVRGQTNLPFYDPMCGSGTFLIEAAQVALDIAPGGSRSFAFEW
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHH
LKGADTKSWQKLKSDAQRARMLASAEGLQIAGSDISTDMLAMAHANWARAGLPGEARTKQ
HCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCHHHCCCCCCCHHHH
VDARFTQPPFAEPGLLMMNPPYGERIVVRGDRRQPQAEMPRDEAEEAAANQFASAFATTL
HCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCHHCCCHHHHHHHHHHHHHHHHHHHH
KQNFAGWQAWVFTGDLSMPKRLRLKESRRTPLYNGNIECRLFRFDMVRGGNRGPQPG
HHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]