| Definition | Ralstonia eutropha JMP134 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007347 |
| Length | 3,806,533 |
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The map label for this gene is speE [C]
Identifier: 73542336
GI number: 73542336
Start: 2907794
End: 2910091
Strand: Reverse
Name: speE [C]
Synonym: Reut_A2651
Alternate gene names: 73542336
Gene position: 2910091-2907794 (Counterclockwise)
Preceding gene: 73542337
Following gene: 73542323
Centisome position: 76.45
GC content: 60.05
Gene sequence:
>2298_bases ATGGAAACGAGAAACCCAATCGCAACCGCATTGCCGGCGGCAATACCGGTTCGAGATGGCAGCAAACTGCCCACGGATAC CACTGCGCTGCGTTGGAAGCACACTCTCTGCATCCTGTTTTTCTTTTCCGGATTTCCGGCGCTTATTTACCAGCTGATAT GGCAACGGGCTCTGTTTCGGATTCTCGGGGTCAATATCGAGTCGGTGACTATCGTCGTCACGGCCTTCATGCTTGGGCTT GGGCTTGGCAGCCTTGCGGGCGGATTGCTGTCGAAACGACGCGGCCTTTCCCTGCTTCCGCTGCTGGCAGCCATCGAGTT TCTCTCGGGAGCTTTCGGCCTCGTTTCGCTGGATGTATTCGACCGGGTTGGCACCTTTGCGCTGGGTCTGCCGTTAAGCG CGACAGCGGCAGTGGCGCTGGCGCTGGTGCTGGCACCGACGCTGCTCATGGGCGCAACGCTGCCGGTCCTGGTCGGTCAT CTGGCTCGACGCTCCGGTAACGTAGGCAGTTCCGTTGGCTTGCTCTACTACGTCAATACATTGGGGGCTGGCGTTGCTTG CCTGATCTGTACGGTATTGCTGTTCCCTTTTCTCGGCATGCAGGCTGCGGTGTACGTGGCGGTTGCCATCAACGCAACCG TAGCAGTCGTGGCGTTGGTGGTGCACTGGCGCGACCACGGTGAAGGCGATACGGGCGCAGCACAATCGCAGGTTCAATCG GCCACTACACCAGCACTGCGCTTTGGCGCGGTGCTGGCCCTGGCTTGTGCTGGCGGAGCGATTTCGCTCTCCTATGAGAT CTTCTTCTTCCGCACAGTGTCTTATGCCTCCGGGAGCGGGGCCTCGGCTTTCGCAGCGACCTTGGCAGCATTCTTGATCG GCATCGCCTCGGGATCGCGCCAGGCGGGGGAGTGGTGCGGCGGGGCGCTGGAACACGGTATGCGGCAGTTGGCCGGCTCG CTGTTAAAGGCCAATCTGGTGGGCTTGCTGTTTCTGCCGCTGCTGGCGCATTTCCCCGTGCCCGGTAGCGCGCAGCTTGG CGTCTCGCTGCTGGTGGTGTTCGTGGTGGCCCGCAGTTGGGGGGCGCTGCTACCTTGCCTGGCTCATTGGGGCGTGTCTC CCGATGGCCATGCCGGTATGCGCATTGCACTACTCTATCTCGCCAACATAGTCGGCTCGGTCACGGGCAGCATCCTTACC GGCTTTGTCCTGATGGAGCATCTCGGACTGGTCAGCATTTCCATGGTGCTGGTAGGGGCTGGTGTCGGATGTTCCTTGTT GCTGAACGTATTGCTGCCTCTGCCACCGAAGGCGAAGCGCTGGCATGTCGGCTGCGCCGGCGCTATGGGCGTGTTGATCG TAGCGGCGCTCCCTGCGCTTAGTATCGGCGTGCTGGAAGCGCTGTTATGGAAGGGTTCACCCGAGGCCAAGGGGCCGTTC ACCCATGTGATCGAGAACCGCAGTGGCATCATCACAGTGGATAGGGAAGGTACTGTGTATGGCGGCGGTATGTATGATGG CCGTTTCAACGTCGATCTGCGGCACGACACCAATGGCATCTTGCGTCCCTATGCGCTGAACCTGTTCCATCGCCACCCAC GCGACGTGCTGATGATCGGACTGTCATCCGGCTCGTGGGCACAGGTGATTGCCAACAATCCGGAAGTGCGATCGCTCACG ATTGTGGAGATTAATCCCGGCTACGTCGAGTTAGTAGCAGGTTCGGCGGAAGTTGCGTCTGTACTGCGCAACCCCAAGGT GACTCTCATTACCGACGACGGGCGCCGCTGGTTGCGCTTGAACCGCGAACGGCGCTTTGACGCTATCGTCTCCAATACGA CTTGGCATTTCAGGGCAAACGCAACCAATCTGCTGTCTGCCGAATTCCTTCAACTGGCCGATGCCCACTTAAAGCCAGGG GGCGTCCTTTACTACAACACCACCGATTCGGATCGGGTTCAGCGTACGGCTTGCCTGGCATTCCCCTACGGGGCGCGTTT CAGCAATCATATGGTCGTGTCGCGTGCACCGCTGGCCTGGGACTTCGAACATTTCCGCCATACGCTGGAAGCCTATCGTA TCAATGGCCAGCCGGTCCTCGACGTGCGTGCCGGCCAGGACCGCCTTGTTGCAGATGCCTTGATGGCCGAGTGGGAATCC TCGCTGCACCGTGGCAGTTCTCGACAAGAGGATGCCATGGAAACCTGTCCGCGCATCCTGGCCCGTACCGTTGGGCTGAA GCAGGTTACCGATGACAACATGGGTACGGAATGGCGCCACTTGATGCGTCTCGATTGA
Upstream 100 bases:
>100_bases GCACATTGGGTGGCGGGGCGGCTGACGAGGAGTGTTTCAGGATCTATTCGAACCACTAACGCGCTACCGACAAGAATAAT GATCGGCTCGAGGGGAATCC
Downstream 100 bases:
>100_bases GTCGTGCTGCTTCGTCGGCTTTTGCCCGCCGTATGCGGCAAAATCGGCGCAAGAGAATCGCCGTGCCAGTTCGGCGCAGG CGCCTATCGTTAGCCGCGGT
Product: putative spermidine synthase
Products: 5-Methylthioadenosine; H+; Spermidine [C]
Alternate protein names: Integral Membrane Protein; Inner Membrane Protein; Spermine Synthase
Number of amino acids: Translated: 765; Mature: 765
Protein sequence:
>765_residues METRNPIATALPAAIPVRDGSKLPTDTTALRWKHTLCILFFFSGFPALIYQLIWQRALFRILGVNIESVTIVVTAFMLGL GLGSLAGGLLSKRRGLSLLPLLAAIEFLSGAFGLVSLDVFDRVGTFALGLPLSATAAVALALVLAPTLLMGATLPVLVGH LARRSGNVGSSVGLLYYVNTLGAGVACLICTVLLFPFLGMQAAVYVAVAINATVAVVALVVHWRDHGEGDTGAAQSQVQS ATTPALRFGAVLALACAGGAISLSYEIFFFRTVSYASGSGASAFAATLAAFLIGIASGSRQAGEWCGGALEHGMRQLAGS LLKANLVGLLFLPLLAHFPVPGSAQLGVSLLVVFVVARSWGALLPCLAHWGVSPDGHAGMRIALLYLANIVGSVTGSILT GFVLMEHLGLVSISMVLVGAGVGCSLLLNVLLPLPPKAKRWHVGCAGAMGVLIVAALPALSIGVLEALLWKGSPEAKGPF THVIENRSGIITVDREGTVYGGGMYDGRFNVDLRHDTNGILRPYALNLFHRHPRDVLMIGLSSGSWAQVIANNPEVRSLT IVEINPGYVELVAGSAEVASVLRNPKVTLITDDGRRWLRLNRERRFDAIVSNTTWHFRANATNLLSAEFLQLADAHLKPG GVLYYNTTDSDRVQRTACLAFPYGARFSNHMVVSRAPLAWDFEHFRHTLEAYRINGQPVLDVRAGQDRLVADALMAEWES SLHRGSSRQEDAMETCPRILARTVGLKQVTDDNMGTEWRHLMRLD
Sequences:
>Translated_765_residues METRNPIATALPAAIPVRDGSKLPTDTTALRWKHTLCILFFFSGFPALIYQLIWQRALFRILGVNIESVTIVVTAFMLGL GLGSLAGGLLSKRRGLSLLPLLAAIEFLSGAFGLVSLDVFDRVGTFALGLPLSATAAVALALVLAPTLLMGATLPVLVGH LARRSGNVGSSVGLLYYVNTLGAGVACLICTVLLFPFLGMQAAVYVAVAINATVAVVALVVHWRDHGEGDTGAAQSQVQS ATTPALRFGAVLALACAGGAISLSYEIFFFRTVSYASGSGASAFAATLAAFLIGIASGSRQAGEWCGGALEHGMRQLAGS LLKANLVGLLFLPLLAHFPVPGSAQLGVSLLVVFVVARSWGALLPCLAHWGVSPDGHAGMRIALLYLANIVGSVTGSILT GFVLMEHLGLVSISMVLVGAGVGCSLLLNVLLPLPPKAKRWHVGCAGAMGVLIVAALPALSIGVLEALLWKGSPEAKGPF THVIENRSGIITVDREGTVYGGGMYDGRFNVDLRHDTNGILRPYALNLFHRHPRDVLMIGLSSGSWAQVIANNPEVRSLT IVEINPGYVELVAGSAEVASVLRNPKVTLITDDGRRWLRLNRERRFDAIVSNTTWHFRANATNLLSAEFLQLADAHLKPG GVLYYNTTDSDRVQRTACLAFPYGARFSNHMVVSRAPLAWDFEHFRHTLEAYRINGQPVLDVRAGQDRLVADALMAEWES SLHRGSSRQEDAMETCPRILARTVGLKQVTDDNMGTEWRHLMRLD >Mature_765_residues METRNPIATALPAAIPVRDGSKLPTDTTALRWKHTLCILFFFSGFPALIYQLIWQRALFRILGVNIESVTIVVTAFMLGL GLGSLAGGLLSKRRGLSLLPLLAAIEFLSGAFGLVSLDVFDRVGTFALGLPLSATAAVALALVLAPTLLMGATLPVLVGH LARRSGNVGSSVGLLYYVNTLGAGVACLICTVLLFPFLGMQAAVYVAVAINATVAVVALVVHWRDHGEGDTGAAQSQVQS ATTPALRFGAVLALACAGGAISLSYEIFFFRTVSYASGSGASAFAATLAAFLIGIASGSRQAGEWCGGALEHGMRQLAGS LLKANLVGLLFLPLLAHFPVPGSAQLGVSLLVVFVVARSWGALLPCLAHWGVSPDGHAGMRIALLYLANIVGSVTGSILT GFVLMEHLGLVSISMVLVGAGVGCSLLLNVLLPLPPKAKRWHVGCAGAMGVLIVAALPALSIGVLEALLWKGSPEAKGPF THVIENRSGIITVDREGTVYGGGMYDGRFNVDLRHDTNGILRPYALNLFHRHPRDVLMIGLSSGSWAQVIANNPEVRSLT IVEINPGYVELVAGSAEVASVLRNPKVTLITDDGRRWLRLNRERRFDAIVSNTTWHFRANATNLLSAEFLQLADAHLKPG GVLYYNTTDSDRVQRTACLAFPYGARFSNHMVVSRAPLAWDFEHFRHTLEAYRINGQPVLDVRAGQDRLVADALMAEWES SLHRGSSRQEDAMETCPRILARTVGLKQVTDDNMGTEWRHLMRLD
Specific function: Spermidine biosynthesis from arginine; third (last) step. [C]
COG id: COG0421
COG function: function code E; Spermidine synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.5.1.16 [C]
Molecular weight: Translated: 81650; Mature: 81650
Theoretical pI: Translated: 8.80; Mature: 8.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METRNPIATALPAAIPVRDGSKLPTDTTALRWKHTLCILFFFSGFPALIYQLIWQRALFR CCCCCCHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH ILGVNIESVTIVVTAFMLGLGLGSLAGGLLSKRRGLSLLPLLAAIEFLSGAFGLVSLDVF HHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHEEHHHH DRVGTFALGLPLSATAAVALALVLAPTLLMGATLPVLVGHLARRSGNVGSSVGLLYYVNT HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH LGAGVACLICTVLLFPFLGMQAAVYVAVAINATVAVVALVVHWRDHGEGDTGAAQSQVQS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH ATTPALRFGAVLALACAGGAISLSYEIFFFRTVSYASGSGASAFAATLAAFLIGIASGSR HCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC QAGEWCGGALEHGMRQLAGSLLKANLVGLLFLPLLAHFPVPGSAQLGVSLLVVFVVARSW CHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH GALLPCLAHWGVSPDGHAGMRIALLYLANIVGSVTGSILTGFVLMEHLGLVSISMVLVGA HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GVGCSLLLNVLLPLPPKAKRWHVGCAGAMGVLIVAALPALSIGVLEALLWKGSPEAKGPF CCCHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH THVIENRSGIITVDREGTVYGGGMYDGRFNVDLRHDTNGILRPYALNLFHRHPRDVLMIG HHHHCCCCCEEEECCCCEEEECCEECCEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEEE LSSGSWAQVIANNPEVRSLTIVEINPGYVELVAGSAEVASVLRNPKVTLITDDGRRWLRL ECCCCEEHEECCCCCEEEEEEEEECCCEEEEEECCHHHHHHHCCCCEEEEECCCHHHHHH NRERRFDAIVSNTTWHFRANATNLLSAEFLQLADAHLKPGGVLYYNTTDSDRVQRTACLA CHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHEE FPYGARFSNHMVVSRAPLAWDFEHFRHTLEAYRINGQPVLDVRAGQDRLVADALMAEWES CCCCCCCCCCEEEECCCCCCCHHHHHHHHHHEEECCCEEEEEECCCCHHHHHHHHHHHHH SLHRGSSRQEDAMETCPRILARTVGLKQVTDDNMGTEWRHLMRLD HHHCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHCCC >Mature Secondary Structure METRNPIATALPAAIPVRDGSKLPTDTTALRWKHTLCILFFFSGFPALIYQLIWQRALFR CCCCCCHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH ILGVNIESVTIVVTAFMLGLGLGSLAGGLLSKRRGLSLLPLLAAIEFLSGAFGLVSLDVF HHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHEEHHHH DRVGTFALGLPLSATAAVALALVLAPTLLMGATLPVLVGHLARRSGNVGSSVGLLYYVNT HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH LGAGVACLICTVLLFPFLGMQAAVYVAVAINATVAVVALVVHWRDHGEGDTGAAQSQVQS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH ATTPALRFGAVLALACAGGAISLSYEIFFFRTVSYASGSGASAFAATLAAFLIGIASGSR HCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC QAGEWCGGALEHGMRQLAGSLLKANLVGLLFLPLLAHFPVPGSAQLGVSLLVVFVVARSW CHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH GALLPCLAHWGVSPDGHAGMRIALLYLANIVGSVTGSILTGFVLMEHLGLVSISMVLVGA HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GVGCSLLLNVLLPLPPKAKRWHVGCAGAMGVLIVAALPALSIGVLEALLWKGSPEAKGPF CCCHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH THVIENRSGIITVDREGTVYGGGMYDGRFNVDLRHDTNGILRPYALNLFHRHPRDVLMIG HHHHCCCCCEEEECCCCEEEECCEECCEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEEE LSSGSWAQVIANNPEVRSLTIVEINPGYVELVAGSAEVASVLRNPKVTLITDDGRRWLRL ECCCCEEHEECCCCCEEEEEEEEECCCEEEEEECCHHHHHHHCCCCEEEEECCCHHHHHH NRERRFDAIVSNTTWHFRANATNLLSAEFLQLADAHLKPGGVLYYNTTDSDRVQRTACLA CHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHEE FPYGARFSNHMVVSRAPLAWDFEHFRHTLEAYRINGQPVLDVRAGQDRLVADALMAEWES CCCCCCCCCCEEEECCCCCCCHHHHHHHHHHEEECCCEEEEEECCCCHHHHHHHHHHHHH SLHRGSSRQEDAMETCPRILARTVGLKQVTDDNMGTEWRHLMRLD HHHCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): 0.0022 {S-adenosyl-3-methylthio-1-propylamine}} 0.09 {1,4-diaminobutane}} 0.012 {1,4-diaminobutane}} [C]
Substrates: S-Adenosylmethioninamine; Putrescine [C]
Specific reaction: S-Adenosylmethioninamine + Putrescine --> 5-Methylthioadenosine + H+ + Spermidine [C]
General reaction: Aminopropyl group transfer [C]
Inhibitor: 5'-Ethyl thioadenosine; 5'-Methyl thioadenosine; Dicyclohexyl amine; carbonyl binding reagents, [C]
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA