| Definition | Ralstonia eutropha JMP134 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007347 |
| Length | 3,806,533 |
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The map label for this gene is gyrA [H]
Identifier: 73542263
GI number: 73542263
Start: 2823178
End: 2825829
Strand: Reverse
Name: gyrA [H]
Synonym: Reut_A2578
Alternate gene names: 73542263
Gene position: 2825829-2823178 (Counterclockwise)
Preceding gene: 73542268
Following gene: 73542262
Centisome position: 74.24
GC content: 61.31
Gene sequence:
>2652_bases ATGGATCCATTCGCAAAAGAAACCCTTCCGGTCTCCCTTGAAGAGGAAATGCGCCGCTCGTATCTGGATTACGCAATGAG CGTGATCGTAGGGCGGGCGCTTCCCGATGTGCGGGATGGCCTGAAGCCGGTTCACAGGCGCGTGCTCTATGCGATGCATG AGCTCAACAACGACTGGAACCGGGCGTACAAGAAATCAGCCCGTATCGTCGGTGATGTGATTGGTAAGTACCATCCGCAC GGCGACACTGCTGTATACGATACGATCGTCCGCATGGCGCAGAATTTCTCGCTGCGCTACATGCTCGTCGACGGGCAGGG GAATTTCGGTTCGGTGGACGGCGATAACGCGGCAGCAATGCGTTATACCGAAATCCGACTTTCGAAAATCGCCCACGAGA TGCTCCACGACATCGACAAGGAAACTGTCGATTTCGATCCGAACTATGACGGTTCGGAAAAAGAGCCCGCTATTCTCCCT GCGCGAATTCCGAATCTGCTTATCAATGGTTCGTCGGGTATTGCGGTCGGCATGGCCACCAATATCCCGCCGCATAACCT TAATGAAATCGTCGATGGCTGTCTTCACCTGCTGCGCAATCCGCAGGCAACGGTGGATGAGCTGATTGAATTGATTCCCG CGCCCGATTTCCCGACCGCCGGCATTATCTACGGTATTCAGGGCGTGCGCGAAGGCTATCGGACCGGACGTGGACGCGTT GTCATGCGCGCGCGCACGCACTTCGAGGACATCGACCGCGGCCAGCGCCAGGCCATCATCGTCGACGAGCTGCCGTACCA GGTGAACAAGCGCACGCTGCTCGAGCGCATTGCCGAGCTGGTCACCGAGAAGAAGGTCGAGGGCATCTCGGACATCCGCG ACGAGTCGGACAAGTCCGGCATGCGCGTGGTGATCGAACTCAAGCGCAACGAGGTTCCCGAGGTCGTCCTCAACAACCTA TATAAGAACACCCAGCTCCAGGACACGTTCGGCATGAACATGGTGGCGCTGGTCGACCGCCAGCCGCGCCTGCTGAACCT GAAGCAGATGCTCGAGTACTTCCTGCAGCACCGCCGGGAAGTTGTGACGCGTCGTACGGTATTCGAGCTGCGCAAGGCGC GCGAGCGTGGCCATGTGCTGGAAGGCCTGGCCGTGGCGCTCGCCAACATCGACGAGTTCATCGCGATCATCAAGGCGGCG CCTACGCCACCTATCGCCAAGCAGGAACTGATGGCGAAGTCGTGGGATTCCGGGCTTGTGCGCGAAATGCTCGCACGTGC CGAAGCCGACACCCCTGGTGGCCGTGCGTCGTACCGCCCGGATGGGTTGCCAGCGATGTTCGGCATGCAGGGCGATGGCC TGTACCGCCTGTCGGATTCCCAGGCGCAGGAAATCCTGCAGATGCGCCTGCAACGCCTCACCGGTCTGGAACAGGACAAG ATCGTCCAGGAATATCGCGATGTGATGGCGATCATCGCGGATTTGCTCGATATCCTGGCACGGCCCGAGCGTATTACCAC CATCATTTCCGACGAACTGACCGCTATCCGCGCGGAATTCGGCGACGAGCGCCGCTCGCAGATCGAGCTGAACGCCACCG AGCTCGACACCGAGGACCTGATCACGCCGCAGGACATGGTGGTCACGCTGTCCCACAGTGGCTATATGAAGAGCCAGCCG ATTTCCGAATACCGTGCCCAGAAGCGCGGCGGACGCGGCAAGCTGGCGACGGCGACCAAGGAAGACGACTGGATCGACAC GCTGTTTGTGGCCAACACCCACGACTACATCCTGTGCTTCTCGAACCGAGGTCGCCTGTACTGGCTCAAGGTCTATGAAG TGCCGCAGGGCTCGCGCAACTCGCGCGGCCGCCCAATCGTCAACATGTTCCCGCTGTCGGACGGCGAGAAGATCAACGTC ATCCTGCCGGTCCGCCAGTTCGACGCCGAGCACTTCATCTTCATGGCCACCGCGCGCGGCACGGTCAAGAAGACGGCGCT GACGGAATTCTCGAACCCTCGCAAGGCCGGCATCATCGCCGTCGACCTCGACGAGGGCGACTATCTGATCGGCGCCGCCG TGACGGACGGGCAGCACGATGTGATGCTGTTCTCGGATGCCGGCAAAGCCGTGCGTTTCGATGAGAACGATGTGCGCCCG ATGGGCCGCCAGGCACGTGGCGTACGCGGCATGAATCTCGACGAGTCGCAAACCGTCATCGCCATGCTCGTAGCGCCGGC AGAGACGGCGGAGCAAACCGAAGCCGGCTCGCCGGGCAGCGTGCTGACCGCGACCGAGAACGGCTACGGCAAGCGTACGC CGATCGCCGAGTACACTCGACACGGTCGTGGGACCAAGGGCATGATTGCGATCCAGACGAGCGAGCGCAACGGCCGTGTG GTGGCTGCTGCACTGGTTTCGCCCGATGACGAGATCATGCTGATCACCACAGGCGGCGTGCTGATCCGCACGCGCGTGGC CGAAATCCGCGAGATGGGCCGCGCGACGCAGGGCGTCACGCTGATCAATGTTGACGAAGGCACTAAGCTCTCGGGCCTGC AGCGCATCGTGGAAACCGATGCCGACAACGGTGCGGGCTCGGAAGAGGCGGAAGAGGCGGATGGTGCCGCCGATGCCGAT GCCAATTCGTAA
Upstream 100 bases:
>100_bases TGGTAGAATGCCATGTTGGCCCGCCGCCGGATGCCCTCGCGCATTGAGCGGAAAACACGGCCCTCCTTTCGCTTAAACCC GCCGCATAAACCACGCCGCA
Downstream 100 bases:
>100_bases GTTGTTGCAACAATAGGACACCGGCCGGAACTCGCCAGATGGCGGTCCGGACTAAAACGGACATATTTACCAGGGAGTCA CAATGCTCAAAACCTATCGA
Product: DNA gyrase subunit A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 883; Mature: 883
Protein sequence:
>883_residues MDPFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPH GDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKIAHEMLHDIDKETVDFDPNYDGSEKEPAILP ARIPNLLINGSSGIAVGMATNIPPHNLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAGIIYGIQGVREGYRTGRGRV VMRARTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGMRVVIELKRNEVPEVVLNNL YKNTQLQDTFGMNMVALVDRQPRLLNLKQMLEYFLQHRREVVTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAA PTPPIAKQELMAKSWDSGLVREMLARAEADTPGGRASYRPDGLPAMFGMQGDGLYRLSDSQAQEILQMRLQRLTGLEQDK IVQEYRDVMAIIADLLDILARPERITTIISDELTAIRAEFGDERRSQIELNATELDTEDLITPQDMVVTLSHSGYMKSQP ISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILCFSNRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLSDGEKINV ILPVRQFDAEHFIFMATARGTVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDVRP MGRQARGVRGMNLDESQTVIAMLVAPAETAEQTEAGSPGSVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGRV VAAALVSPDDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSGLQRIVETDADNGAGSEEAEEADGAADAD ANS
Sequences:
>Translated_883_residues MDPFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPH GDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKIAHEMLHDIDKETVDFDPNYDGSEKEPAILP ARIPNLLINGSSGIAVGMATNIPPHNLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAGIIYGIQGVREGYRTGRGRV VMRARTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGMRVVIELKRNEVPEVVLNNL YKNTQLQDTFGMNMVALVDRQPRLLNLKQMLEYFLQHRREVVTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAA PTPPIAKQELMAKSWDSGLVREMLARAEADTPGGRASYRPDGLPAMFGMQGDGLYRLSDSQAQEILQMRLQRLTGLEQDK IVQEYRDVMAIIADLLDILARPERITTIISDELTAIRAEFGDERRSQIELNATELDTEDLITPQDMVVTLSHSGYMKSQP ISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILCFSNRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLSDGEKINV ILPVRQFDAEHFIFMATARGTVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDVRP MGRQARGVRGMNLDESQTVIAMLVAPAETAEQTEAGSPGSVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGRV VAAALVSPDDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSGLQRIVETDADNGAGSEEAEEADGAADAD ANS >Mature_883_residues MDPFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPH GDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKIAHEMLHDIDKETVDFDPNYDGSEKEPAILP ARIPNLLINGSSGIAVGMATNIPPHNLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAGIIYGIQGVREGYRTGRGRV VMRARTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGMRVVIELKRNEVPEVVLNNL YKNTQLQDTFGMNMVALVDRQPRLLNLKQMLEYFLQHRREVVTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAA PTPPIAKQELMAKSWDSGLVREMLARAEADTPGGRASYRPDGLPAMFGMQGDGLYRLSDSQAQEILQMRLQRLTGLEQDK IVQEYRDVMAIIADLLDILARPERITTIISDELTAIRAEFGDERRSQIELNATELDTEDLITPQDMVVTLSHSGYMKSQP ISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILCFSNRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLSDGEKINV ILPVRQFDAEHFIFMATARGTVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDVRP MGRQARGVRGMNLDESQTVIAMLVAPAETAEQTEAGSPGSVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGRV VAAALVSPDDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSGLQRIVETDADNGAGSEEAEEADGAADAD ANS
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0188
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the topoisomerase gyrA/parC subunit family [H]
Homologues:
Organism=Homo sapiens, GI19913406, Length=319, Percent_Identity=27.8996865203762, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI19913408, Length=319, Percent_Identity=27.8996865203762, Blast_Score=96, Evalue=2e-19, Organism=Escherichia coli, GI1788562, Length=886, Percent_Identity=58.6907449209932, Blast_Score=1045, Evalue=0.0, Organism=Escherichia coli, GI1789396, Length=743, Percent_Identity=34.8586810228802, Blast_Score=386, Evalue=1e-108, Organism=Caenorhabditis elegans, GI17535065, Length=384, Percent_Identity=25.5208333333333, Blast_Score=78, Evalue=2e-14, Organism=Caenorhabditis elegans, GI212645657, Length=352, Percent_Identity=25, Blast_Score=75, Evalue=1e-13, Organism=Caenorhabditis elegans, GI212645845, Length=377, Percent_Identity=24.6684350132626, Blast_Score=75, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6324241, Length=399, Percent_Identity=26.8170426065163, Blast_Score=91, Evalue=6e-19, Organism=Drosophila melanogaster, GI17136538, Length=352, Percent_Identity=25.5681818181818, Blast_Score=88, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020899 - InterPro: IPR005743 - InterPro: IPR006691 - InterPro: IPR002205 - InterPro: IPR013758 - InterPro: IPR013757 - InterPro: IPR013760 [H]
Pfam domain/function: PF03989 DNA_gyraseA_C; PF00521 DNA_topoisoIV [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 98228; Mature: 98228
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDPFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWN CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHH RAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAM HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCEE RYTEIRLSKIAHEMLHDIDKETVDFDPNYDGSEKEPAILPARIPNLLINGSSGIAVGMAT EHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEECCCCEEEEEEC NIPPHNLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAGIIYGIQGVREGYRTGRGRV CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEE VMRARTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSG EEEEHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC MRVVIELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDRQPRLLNLKQMLEYFLQHRRE CEEEEEECCCCCHHHHHHHHHCCCCCCHHHCCCEEEEECCCCCEECHHHHHHHHHHHHHH VVTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSGLV HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHH REMLARAEADTPGGRASYRPDGLPAMFGMQGDGLYRLSDSQAQEILQMRLQRLTGLEQDK HHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCEEEECCHHHHHHHHHHHHHHCCCCHHH IVQEYRDVMAIIADLLDILARPERITTIISDELTAIRAEFGDERRSQIELNATELDTEDL HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHCCCHHHC ITPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILCF CCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCEEEEEEECCCCEEEEE SNRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLSDGEKINVILPVRQFDAEHFIFMATARG CCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEEHHHCCCCEEEEEEECCC TVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDVRP CHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEECCCCEEECCCCCCCC MGRQARGVRGMNLDESQTVIAMLVAPAETAEQTEAGSPGSVLTATENGYGKRTPIAEYTR CCHHHCCCCCCCCCCCCEEEEEEEECCHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHH HGRGTKGMIAIQTSERNGRVVAAALVSPDDEIMLITTGGVLIRTRVAEIREMGRATQGVT CCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCEEEHHHHHHHHHHCCHHCCEE LINVDEGTKLSGLQRIVETDADNGAGSEEAEEADGAADADANS EEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCC >Mature Secondary Structure MDPFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWN CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHH RAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAM HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCEE RYTEIRLSKIAHEMLHDIDKETVDFDPNYDGSEKEPAILPARIPNLLINGSSGIAVGMAT EHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEECCCCEEEEEEC NIPPHNLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAGIIYGIQGVREGYRTGRGRV CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEE VMRARTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSG EEEEHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC MRVVIELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDRQPRLLNLKQMLEYFLQHRRE CEEEEEECCCCCHHHHHHHHHCCCCCCHHHCCCEEEEECCCCCEECHHHHHHHHHHHHHH VVTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSGLV HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHH REMLARAEADTPGGRASYRPDGLPAMFGMQGDGLYRLSDSQAQEILQMRLQRLTGLEQDK HHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCEEEECCHHHHHHHHHHHHHHCCCCHHH IVQEYRDVMAIIADLLDILARPERITTIISDELTAIRAEFGDERRSQIELNATELDTEDL HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHCCCHHHC ITPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILCF CCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCEEEEEEECCCCEEEEE SNRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLSDGEKINVILPVRQFDAEHFIFMATARG CCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEEHHHCCCCEEEEEEECCC TVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDVRP CHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEECCCCEEECCCCCCCC MGRQARGVRGMNLDESQTVIAMLVAPAETAEQTEAGSPGSVLTATENGYGKRTPIAEYTR CCHHHCCCCCCCCCCCCEEEEEEEECCHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHH HGRGTKGMIAIQTSERNGRVVAAALVSPDDEIMLITTGGVLIRTRVAEIREMGRATQGVT CCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCEEEHHHHHHHHHHCCHHCCEE LINVDEGTKLSGLQRIVETDADNGAGSEEAEEADGAADADANS EEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7830580 [H]