| Definition | Ralstonia eutropha JMP134 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007347 |
| Length | 3,806,533 |
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The map label for this gene is 73541995
Identifier: 73541995
GI number: 73541995
Start: 2545721
End: 2548579
Strand: Reverse
Name: 73541995
Synonym: Reut_A2309
Alternate gene names: NA
Gene position: 2548579-2545721 (Counterclockwise)
Preceding gene: 73541996
Following gene: 73541994
Centisome position: 66.95
GC content: 67.68
Gene sequence:
>2859_bases GTGAGTGTGAGCCAACATCGCCGGAAGAATGCGCCAACCGTCCGTCAGCGCTGGTCAACGCTGGCCGTCACGGCTCTCGG GCTGCTGCTTGCGCAGCCAGCTGCGTATGCCGCGGGGTTCGGGCAATTGCGGGTACAGTCGAATCTGGGGCAACCGCTGC AGGCGGAGATCGACATCAGCGGGGTGACTGCCGAAGAGGCAGCGGGATTGAACGTCAAGCTGGCCTCGCCGGCGGCGTAT GCAAGCGCGGGGCTGACGTATCTGCCGGCCGTGAGCAGCTTGCGACTCGATATCGAGCGCCGTCCCAATGGCAGCTACGT GGCCAAGGTCCGGTCCAGCCAGCCGATCAGCGAGCCGTTCGTCGATATTCTGATCGACATGAGCTGGTCCAGCGGCAAGG TGTCGCGGGCCTATACTTTCCTGCTTGACCCCGCCGGGGCCAAGCCTTCCAACCAGACTTTCTCGCCGGCGACGGTCGTG CAGGCCGCCACGCCGGATGCCTCGCCGGCTGCCGCACCGGCGCCGGTGCCATTGCAGGAACCCGCACCGGCTGCCGCCCA GAGCACGCAGCCCGCTGCCCAAGCGCAGGCGCAGGCCGCAAGGCCCGCGAGGCAGCCCGCCAGTCGTCGTAGCCACGCGG CTCAGGCTGTCACCGGGGGCGAGTCACCGGCAAGCGGAGCGTACACGGTCAAGCGCGGGGACACGCTGTCGTCGATCGCC AACGATGCGCTGCTCGATCAGGAGGGCGTATCACTCGATCAGATGTTGGTCGCGCTGTACCGCAATAATCCTAATGCCTT CATCGGCGGCAATATCAACCGCCTGAAATCCGGCACGGTGCTGCAGGTGCCTTCGCGCCAGCAGGCGCAGTCGCTCACGC CCAAGGCCGCTCGCCGCGAGGTGGTGGCCCGTACGCAGGGCTTTGACGCGTACCGCAGCCGGCTGGCTGGTGCTGCCGCG GCGAAGTCGGTCGAGGCGGACAGCGGGCGCCAGCAGTCGGGCAATGTCACGGCGCGCGTGCAGGACCAGGCCGTTCCGGC CGCTGGTCCGCAGAACGAACTCAAGCTGAGCAAGGGCGAGCGCGCGGGCCAGGCCAATGCCACCGCGCAGGCCGAGGAAA ACGTCGCGCGCGACCGGCAACTGAAGGAAGCCGAATCGCGGCTGGCGCAGTTGCAGAAGAACGTTGGCGACATGCAGAAG CTGCTCGAGCTGAAGAACAGCGAGATCGCCAAGCTATCCCAGGCCAACCAGGCCAACCAGGCTAACCAGGCTAACCAGGC TAACCAGGCCGCTGCGGCCGACAAGGGCAGGGCGGAAAAGGCTGCGCCGGCGGAAGCCAAGGCGCCGACCGTGGTCGCGG CCGAACCGCCTAAGACTGATGCACCGGCCCAGGCCGCACCGGCCACACCGACGGCACAAGTCGATGCCGCAAGTGCCGCC CCGGCCCAGGCTGCAGCGGCGGCAACCGCTGCGGTGGCTACTAGTCCGGCTACTCCGGCTGCCTCGGCACCGGTTGCCGG TGCCAGCACTGCACAGGCTGCAGCGCCCGCACCCAAGCGTCCACCGGTCGTGGTCCAGGCCGAGCCGGCGCCGGAGCCGT CGTTCCTCGACGGTCTGCTGGCCAATCCTATGCTGTTGCCCGGTGGTGGCCTGCTGGTGGCGCTGCTTGGCGGCTATGCG ATCTACCGTCGCCGCCAGCAGCAGAAGTCGGCGGATGGCGGAGCCTTCGGTGACTCCATCCTGTCGCAGGAAAGCACCGT GATGGCCGGCGCCAATTCGCTGTTCGGTGCAGCCGGCGGGCAGAGCGTGGACACGTCGCAGCACAGCGTGTTCGGCGCGG ATTTCCGCATCGGCAACAACATGCCGGAAGCCAGCGAGGTCGACCCGATCGCCGAGGCGGAGGTCTATATCGCCTACGGG CGCGACGTGCAGGCGGAAGAGATCCTGCGTGAAGCGCTCGAGAAGGACCCGGAGCAGCAGCCGATCCGGCTCAAGCTCCT GGAGATTTACAGTAATCGTCAGGATGTGGAAGGTTTCCGCGTGATTGCAGAAGAGATGTTCGCCCAGACCGGCGGACAAG GGGCGGAATGGCTCAAGGCCGCGGAAATGGGGCGCGCACTCGATGCGGGCAATGCGTTGTACCTGGCGGTGTCGCCGGAC ACGAGCAGCGGGCCGGAAACGTCCACGCCGGCGTCGGACCAGTGGCGCACGCAGGACCCGTCGCACGATCCGGCCGTGGC GCCGCGCGAACCTTCGCTGGGTGATCTGGCGCTGCCGCTGGATGCCTTCCCGGCACCGGCGGCTGGTGATCCGATCATTG CGCCGGAGTCGGCGTCGCTGGTCTTCAGCGACACCGCCATGCGCGCCGACGCACCGCTGGAGCCTGCAGCGAAGTTCGAC GGTGACCTGGACCTGACGCTGCCGGTCGACGGTGACGACACCCTCGCAGACGTGCCCCGGCTGGACACGCCGACCCGCTC TCGCATGATGGAATTCGACATGTCGGGCCTCTCGCTCGACTTCAATGCCGACGCCGCCACCGAGTCCAGGGACGAAGCCG ATGCGACCACGCAGCTTCCTTCGCCGACCATGATCCGCGACGGCAAACTGCCAGAGCCGATCGATCTGGCCGCCCTGGGC GACACCGGTCCCGACACCACGCCGGGCGTTTCGCCGAGCACGCTGTCGACAGACGGCATGGACGGTGGGCGCGACATGCA GATCAAGCTGGACCTGGCCCGCGCCTATATCGAGATCGGCGACAAGGAAGGGGCGCGCGAGCTGCTGCAGGAAGTCGTGG AGCAGTCGCAGGACGACCTGCAGGCGGAGGCGCGTTCGCTGCTGCTTGAGGTGGTCTGA
Upstream 100 bases:
>100_bases CTTGCGCAATCCGGTGAGAGGCACACTAGAATGCCCGCTGGCCGGAGTGAATGCTTTGGGGTCGGGTTTCTATCGCTACT AAAACATAACGGAGCATAAG
Downstream 100 bases:
>100_bases GTTATCATCGACGATCCGGGCAGGCGGCAGTCATGCCGCGGCCCGAAGTGATGCGCCGGAAGCGTCCCTTCCGGCGCATT TGTTTTTGTCGGCCATCGCA
Product: peptidoglycan-binding LysM
Products: NA
Alternate protein names: Tfp Pilus Assembly Protein FimV-Like Protein; FimV N-Terminal Domain Protein; FimV Protein; Type 4 Pilus Biogenesis; Lysm Domain; Transmembrane Tfp Pilus Assembly FimV Protein; TPR Repeat-Containing Protein; FimV C-Terminal Domain-Containing Protein; Tfp Pilus Assembly Protein FimV; LysM Domain-Containing; Transmembrane Tfp Pilus Assembly Protein FimV; FimV N-Terminal Domain; FimV N-Terminal Domain-Containing Protein; FimV Type IV Pilus Assembly Protein
Number of amino acids: Translated: 952; Mature: 951
Protein sequence:
>952_residues MSVSQHRRKNAPTVRQRWSTLAVTALGLLLAQPAAYAAGFGQLRVQSNLGQPLQAEIDISGVTAEEAAGLNVKLASPAAY ASAGLTYLPAVSSLRLDIERRPNGSYVAKVRSSQPISEPFVDILIDMSWSSGKVSRAYTFLLDPAGAKPSNQTFSPATVV QAATPDASPAAAPAPVPLQEPAPAAAQSTQPAAQAQAQAARPARQPASRRSHAAQAVTGGESPASGAYTVKRGDTLSSIA NDALLDQEGVSLDQMLVALYRNNPNAFIGGNINRLKSGTVLQVPSRQQAQSLTPKAARREVVARTQGFDAYRSRLAGAAA AKSVEADSGRQQSGNVTARVQDQAVPAAGPQNELKLSKGERAGQANATAQAEENVARDRQLKEAESRLAQLQKNVGDMQK LLELKNSEIAKLSQANQANQANQANQANQAAAADKGRAEKAAPAEAKAPTVVAAEPPKTDAPAQAAPATPTAQVDAASAA PAQAAAAATAAVATSPATPAASAPVAGASTAQAAAPAPKRPPVVVQAEPAPEPSFLDGLLANPMLLPGGGLLVALLGGYA IYRRRQQQKSADGGAFGDSILSQESTVMAGANSLFGAAGGQSVDTSQHSVFGADFRIGNNMPEASEVDPIAEAEVYIAYG RDVQAEEILREALEKDPEQQPIRLKLLEIYSNRQDVEGFRVIAEEMFAQTGGQGAEWLKAAEMGRALDAGNALYLAVSPD TSSGPETSTPASDQWRTQDPSHDPAVAPREPSLGDLALPLDAFPAPAAGDPIIAPESASLVFSDTAMRADAPLEPAAKFD GDLDLTLPVDGDDTLADVPRLDTPTRSRMMEFDMSGLSLDFNADAATESRDEADATTQLPSPTMIRDGKLPEPIDLAALG DTGPDTTPGVSPSTLSTDGMDGGRDMQIKLDLARAYIEIGDKEGARELLQEVVEQSQDDLQAEARSLLLEVV
Sequences:
>Translated_952_residues MSVSQHRRKNAPTVRQRWSTLAVTALGLLLAQPAAYAAGFGQLRVQSNLGQPLQAEIDISGVTAEEAAGLNVKLASPAAY ASAGLTYLPAVSSLRLDIERRPNGSYVAKVRSSQPISEPFVDILIDMSWSSGKVSRAYTFLLDPAGAKPSNQTFSPATVV QAATPDASPAAAPAPVPLQEPAPAAAQSTQPAAQAQAQAARPARQPASRRSHAAQAVTGGESPASGAYTVKRGDTLSSIA NDALLDQEGVSLDQMLVALYRNNPNAFIGGNINRLKSGTVLQVPSRQQAQSLTPKAARREVVARTQGFDAYRSRLAGAAA AKSVEADSGRQQSGNVTARVQDQAVPAAGPQNELKLSKGERAGQANATAQAEENVARDRQLKEAESRLAQLQKNVGDMQK LLELKNSEIAKLSQANQANQANQANQANQAAAADKGRAEKAAPAEAKAPTVVAAEPPKTDAPAQAAPATPTAQVDAASAA PAQAAAAATAAVATSPATPAASAPVAGASTAQAAAPAPKRPPVVVQAEPAPEPSFLDGLLANPMLLPGGGLLVALLGGYA IYRRRQQQKSADGGAFGDSILSQESTVMAGANSLFGAAGGQSVDTSQHSVFGADFRIGNNMPEASEVDPIAEAEVYIAYG RDVQAEEILREALEKDPEQQPIRLKLLEIYSNRQDVEGFRVIAEEMFAQTGGQGAEWLKAAEMGRALDAGNALYLAVSPD TSSGPETSTPASDQWRTQDPSHDPAVAPREPSLGDLALPLDAFPAPAAGDPIIAPESASLVFSDTAMRADAPLEPAAKFD GDLDLTLPVDGDDTLADVPRLDTPTRSRMMEFDMSGLSLDFNADAATESRDEADATTQLPSPTMIRDGKLPEPIDLAALG DTGPDTTPGVSPSTLSTDGMDGGRDMQIKLDLARAYIEIGDKEGARELLQEVVEQSQDDLQAEARSLLLEVV >Mature_951_residues SVSQHRRKNAPTVRQRWSTLAVTALGLLLAQPAAYAAGFGQLRVQSNLGQPLQAEIDISGVTAEEAAGLNVKLASPAAYA SAGLTYLPAVSSLRLDIERRPNGSYVAKVRSSQPISEPFVDILIDMSWSSGKVSRAYTFLLDPAGAKPSNQTFSPATVVQ AATPDASPAAAPAPVPLQEPAPAAAQSTQPAAQAQAQAARPARQPASRRSHAAQAVTGGESPASGAYTVKRGDTLSSIAN DALLDQEGVSLDQMLVALYRNNPNAFIGGNINRLKSGTVLQVPSRQQAQSLTPKAARREVVARTQGFDAYRSRLAGAAAA KSVEADSGRQQSGNVTARVQDQAVPAAGPQNELKLSKGERAGQANATAQAEENVARDRQLKEAESRLAQLQKNVGDMQKL LELKNSEIAKLSQANQANQANQANQANQAAAADKGRAEKAAPAEAKAPTVVAAEPPKTDAPAQAAPATPTAQVDAASAAP AQAAAAATAAVATSPATPAASAPVAGASTAQAAAPAPKRPPVVVQAEPAPEPSFLDGLLANPMLLPGGGLLVALLGGYAI YRRRQQQKSADGGAFGDSILSQESTVMAGANSLFGAAGGQSVDTSQHSVFGADFRIGNNMPEASEVDPIAEAEVYIAYGR DVQAEEILREALEKDPEQQPIRLKLLEIYSNRQDVEGFRVIAEEMFAQTGGQGAEWLKAAEMGRALDAGNALYLAVSPDT SSGPETSTPASDQWRTQDPSHDPAVAPREPSLGDLALPLDAFPAPAAGDPIIAPESASLVFSDTAMRADAPLEPAAKFDG DLDLTLPVDGDDTLADVPRLDTPTRSRMMEFDMSGLSLDFNADAATESRDEADATTQLPSPTMIRDGKLPEPIDLAALGD TGPDTTPGVSPSTLSTDGMDGGRDMQIKLDLARAYIEIGDKEGARELLQEVVEQSQDDLQAEARSLLLEVV
Specific function: Unknown
COG id: COG3170
COG function: function code NU; Tfp pilus assembly protein FimV
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 98945; Mature: 98814
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVSQHRRKNAPTVRQRWSTLAVTALGLLLAQPAAYAAGFGQLRVQSNLGQPLQAEIDIS CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCCCCEEEEEEC GVTAEEAAGLNVKLASPAAYASAGLTYLPAVSSLRLDIERRPNGSYVAKVRSSQPISEPF CCCHHHHCCCEEEECCCHHHHHCCCHHHCCCCCEEEEEEECCCCCEEEEECCCCCCCHHH VDILIDMSWSSGKVSRAYTFLLDPAGAKPSNQTFSPATVVQAATPDASPAAAPAPVPLQE EEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHEEEECCCCCCCCCCCCCCCCCC PAPAAAQSTQPAAQAQAQAARPARQPASRRSHAAQAVTGGESPASGAYTVKRGDTLSSIA CCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHH NDALLDQEGVSLDQMLVALYRNNPNAFIGGNINRLKSGTVLQVPSRQQAQSLTPKAARRE HHHHHCCCCCCHHHHHHHHHHCCCCEEECCCHHHHCCCCEEECCCHHHHHHCCHHHHHHH VVARTQGFDAYRSRLAGAAAAKSVEADSGRQQSGNVTARVQDQAVPAAGPQNELKLSKGE HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEECCCC RAGQANATAQAEENVARDRQLKEAESRLAQLQKNVGDMQKLLELKNSEIAKLSQANQANQ CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH ANQANQANQAAAADKGRAEKAAPAEAKAPTVVAAEPPKTDAPAQAAPATPTAQVDAASAA HHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC PAQAAAAATAAVATSPATPAASAPVAGASTAQAAAPAPKRPPVVVQAEPAPEPSFLDGLL CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEECCCCCCHHHHHHHH ANPMLLPGGGLLVALLGGYAIYRRRQQQKSADGGAFGDSILSQESTVMAGANSLFGAAGG CCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEECCHHHHCCCCC QSVDTSQHSVFGADFRIGNNMPEASEVDPIAEAEVYIAYGRDVQAEEILREALEKDPEQQ CCCCCCCCCEEECEEEECCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCC PIRLKLLEIYSNRQDVEGFRVIAEEMFAQTGGQGAEWLKAAEMGRALDAGNALYLAVSPD CCEEEHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECCC TSSGPETSTPASDQWRTQDPSHDPAVAPREPSLGDLALPLDAFPAPAAGDPIIAPESASL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEECCCCCCE VFSDTAMRADAPLEPAAKFDGDLDLTLPVDGDDTLADVPRLDTPTRSRMMEFDMSGLSLD EEECCHHCCCCCCCCHHHCCCCEEEEEECCCCCHHHHCCCCCCCHHHHHHHHCCCCCEEE FNADAATESRDEADATTQLPSPTMIRDGKLPEPIDLAALGDTGPDTTPGVSPSTLSTDGM CCCCCCCCCCCCCCHHHCCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC DGGRDMQIKLDLARAYIEIGDKEGARELLQEVVEQSQDDLQAEARSLLLEVV CCCCEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SVSQHRRKNAPTVRQRWSTLAVTALGLLLAQPAAYAAGFGQLRVQSNLGQPLQAEIDIS CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCCCCEEEEEEC GVTAEEAAGLNVKLASPAAYASAGLTYLPAVSSLRLDIERRPNGSYVAKVRSSQPISEPF CCCHHHHCCCEEEECCCHHHHHCCCHHHCCCCCEEEEEEECCCCCEEEEECCCCCCCHHH VDILIDMSWSSGKVSRAYTFLLDPAGAKPSNQTFSPATVVQAATPDASPAAAPAPVPLQE EEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHEEEECCCCCCCCCCCCCCCCCC PAPAAAQSTQPAAQAQAQAARPARQPASRRSHAAQAVTGGESPASGAYTVKRGDTLSSIA CCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHH NDALLDQEGVSLDQMLVALYRNNPNAFIGGNINRLKSGTVLQVPSRQQAQSLTPKAARRE HHHHHCCCCCCHHHHHHHHHHCCCCEEECCCHHHHCCCCEEECCCHHHHHHCCHHHHHHH VVARTQGFDAYRSRLAGAAAAKSVEADSGRQQSGNVTARVQDQAVPAAGPQNELKLSKGE HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEECCCC RAGQANATAQAEENVARDRQLKEAESRLAQLQKNVGDMQKLLELKNSEIAKLSQANQANQ CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH ANQANQANQAAAADKGRAEKAAPAEAKAPTVVAAEPPKTDAPAQAAPATPTAQVDAASAA HHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC PAQAAAAATAAVATSPATPAASAPVAGASTAQAAAPAPKRPPVVVQAEPAPEPSFLDGLL CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEECCCCCCHHHHHHHH ANPMLLPGGGLLVALLGGYAIYRRRQQQKSADGGAFGDSILSQESTVMAGANSLFGAAGG CCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEECCHHHHCCCCC QSVDTSQHSVFGADFRIGNNMPEASEVDPIAEAEVYIAYGRDVQAEEILREALEKDPEQQ CCCCCCCCCEEECEEEECCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCC PIRLKLLEIYSNRQDVEGFRVIAEEMFAQTGGQGAEWLKAAEMGRALDAGNALYLAVSPD CCEEEHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECCC TSSGPETSTPASDQWRTQDPSHDPAVAPREPSLGDLALPLDAFPAPAAGDPIIAPESASL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEECCCCCCE VFSDTAMRADAPLEPAAKFDGDLDLTLPVDGDDTLADVPRLDTPTRSRMMEFDMSGLSLD EEECCHHCCCCCCCCHHHCCCCEEEEEECCCCCHHHHCCCCCCCHHHHHHHHCCCCCEEE FNADAATESRDEADATTQLPSPTMIRDGKLPEPIDLAALGDTGPDTTPGVSPSTLSTDGM CCCCCCCCCCCCCCHHHCCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC DGGRDMQIKLDLARAYIEIGDKEGARELLQEVVEQSQDDLQAEARSLLLEVV CCCCEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA