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The map label for this gene is ydhO [H]

Identifier: 73541687

GI number: 73541687

Start: 2190227

End: 2190907

Strand: Direct

Name: ydhO [H]

Synonym: Reut_A1999

Alternate gene names: 73541687

Gene position: 2190227-2190907 (Clockwise)

Preceding gene: 73541686

Following gene: 73541696

Centisome position: 57.54

GC content: 68.58

Gene sequence:

>681_bases
ATGCCTTCGCGCCGTTCCCCTGTTCTTCGCGCCATCCGGCTGCGCCTGCCCGCGGTTCCTGCCGGGGCACGGCTGCCGCT
GGTATGTGCCGCCGCGCTGCTGCTCGTGGCGTGCGCCGGCGCGCCGACCCGCCACGCCAGTCTGCCCCGCACCCCGGGCA
AGCCGATGATCGATCCGAGTGCGGGACTGGAAGAAATTTCGATCCAGGCCATGTCGCTGGTCGGCACGCCATACCGCTAC
GGTGGCAATACGCCGGACAGCGGCTTCGACTGCAGTGGCCTGGTGCGATACGTGGTTGCGCGCGCCGCCGACGTCAACCT
GCCGCGCACCACCGAAGCCATGGGCACGCGCGGCTCGGCGCTGGACCGAAGCGAGGTAGCTTCAGGCGACCTCGTCTTCT
TCAATACAACAGGGCGTGCCAATTCCCATGTCGGCATCTACGTCGGCCAGAACCGATTCGTGCACGCGCCGTCCACTGGC
GGCACGGTGCGGCTCGAGGACATGGGCAAGCCATACTGGGCATCGCGATACAACGGCGCGCGCCGCGTGGTGGCGGCCGT
CAACCAGCCGCTGCCGGTTCAGCCCGCCAGTCCTGTCCCGACACCAGTGCCCCCCGCTGCGCCACCTGACCCCGTCCCGG
CTGTCGACGACGATCCGATCGCGGCTTTCGCCAATAAATAG

Upstream 100 bases:

>100_bases
GCCAGACCAAGACCATCAAGATCGGCACCGGCAGCCGCGACGCACAGTTGCGCTGGTAGCGAAAGGATCCGGGTCAAGGC
TGGCGACCGACCCAGCAAGG

Downstream 100 bases:

>100_bases
CGACTTCCAGAACGACAAAAAAGCCAGGCAAGTGCCTGGCTTTTCTTCATACGCGGATATCCACCCAGCCTTACAGGATG
TGGCGGCCAACCCACCACGC

Product: NLP/P60

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MPSRRSPVLRAIRLRLPAVPAGARLPLVCAAALLLVACAGAPTRHASLPRTPGKPMIDPSAGLEEISIQAMSLVGTPYRY
GGNTPDSGFDCSGLVRYVVARAADVNLPRTTEAMGTRGSALDRSEVASGDLVFFNTTGRANSHVGIYVGQNRFVHAPSTG
GTVRLEDMGKPYWASRYNGARRVVAAVNQPLPVQPASPVPTPVPPAAPPDPVPAVDDDPIAAFANK

Sequences:

>Translated_226_residues
MPSRRSPVLRAIRLRLPAVPAGARLPLVCAAALLLVACAGAPTRHASLPRTPGKPMIDPSAGLEEISIQAMSLVGTPYRY
GGNTPDSGFDCSGLVRYVVARAADVNLPRTTEAMGTRGSALDRSEVASGDLVFFNTTGRANSHVGIYVGQNRFVHAPSTG
GTVRLEDMGKPYWASRYNGARRVVAAVNQPLPVQPASPVPTPVPPAAPPDPVPAVDDDPIAAFANK
>Mature_225_residues
PSRRSPVLRAIRLRLPAVPAGARLPLVCAAALLLVACAGAPTRHASLPRTPGKPMIDPSAGLEEISIQAMSLVGTPYRYG
GNTPDSGFDCSGLVRYVVARAADVNLPRTTEAMGTRGSALDRSEVASGDLVFFNTTGRANSHVGIYVGQNRFVHAPSTGG
TVRLEDMGKPYWASRYNGARRVVAAVNQPLPVQPASPVPTPVPPAAPPDPVPAVDDDPIAAFANK

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=117, Percent_Identity=45.2991452991453, Blast_Score=117, Evalue=5e-28,
Organism=Escherichia coli, GI1788501, Length=196, Percent_Identity=35.7142857142857, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1786421, Length=131, Percent_Identity=35.8778625954198, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1788001, Length=124, Percent_Identity=41.9354838709677, Blast_Score=94, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 23621; Mature: 23490

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSRRSPVLRAIRLRLPAVPAGARLPLVCAAALLLVACAGAPTRHASLPRTPGKPMIDPS
CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
AGLEEISIQAMSLVGTPYRYGGNTPDSGFDCSGLVRYVVARAADVNLPRTTEAMGTRGSA
CCHHHHHHHHHHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCC
LDRSEVASGDLVFFNTTGRANSHVGIYVGQNRFVHAPSTGGTVRLEDMGKPYWASRYNGA
CCHHHCCCCCEEEEECCCCCCCEEEEEECCCEEEECCCCCCEEEECCCCCCHHHHHCCCH
RRVVAAVNQPLPVQPASPVPTPVPPAAPPDPVPAVDDDPIAAFANK
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCC
>Mature Secondary Structure 
PSRRSPVLRAIRLRLPAVPAGARLPLVCAAALLLVACAGAPTRHASLPRTPGKPMIDPS
CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
AGLEEISIQAMSLVGTPYRYGGNTPDSGFDCSGLVRYVVARAADVNLPRTTEAMGTRGSA
CCHHHHHHHHHHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCC
LDRSEVASGDLVFFNTTGRANSHVGIYVGQNRFVHAPSTGGTVRLEDMGKPYWASRYNGA
CCHHHCCCCCEEEEECCCCCCCEEEEEECCCEEEECCCCCCEEEECCCCCCHHHHHCCCH
RRVVAAVNQPLPVQPASPVPTPVPPAAPPDPVPAVDDDPIAAFANK
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]