| Definition | Ralstonia eutropha JMP134 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007347 |
| Length | 3,806,533 |
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The map label for this gene is flu [H]
Identifier: 73541667
GI number: 73541667
Start: 2165575
End: 2168418
Strand: Direct
Name: flu [H]
Synonym: Reut_A1979
Alternate gene names: 73541667
Gene position: 2165575-2168418 (Clockwise)
Preceding gene: 73541647
Following gene: 73541683
Centisome position: 56.89
GC content: 66.67
Gene sequence:
>2844_bases ATGCTCGCGAGATCTTCCCTGGCGTTGCTTATCTTCGGTGCCATGCCCGGAGTCCCCGAGGCCGAAGCGGCCGAATGTTC GCCATGGCAAGGCGGCAAGGCCGTTGCCAATGCGTGCGAGCTGACGCTTGCCGGTGGCACCATCGATACCGGCCGGGGCG ATTACCAGGCTGCGGTGACTGCGCAAGACGGCGGCATCGTGACGGCCACCGGCCCGCTCAAGCTGTTCACCGCCGGCAAC GACGCAACGGGCATCTTCGCGCAAAGCCAAGGCAAGATCACGCTCACCGTGCCCGGCAATTCCGTGATGACAAGCGGCAA GAATTCCTACGGCGTGCAGAGCTTCGGCTCGCAATACATCACCGCGCAAGCCACGATCGTGACCTCGGGCGAGCAATCGC ACGCGGCGTTCGAAGACTTCGGCGGCGCCATCCGGCTGACGGACTCTGACCTCACGACCAGCGGCGCGCGCGCGGCAGGC GCGGCGATTCAGGGCGGCGGCGTCATCGACCTGGAAGGCACCACCACCATCACCACGCGCGGCGATTCGGCGCCGGGCCT GTTTGCGACCGATGCGGGTTCACGCGGAATTCTCGGCGTGAACGGCGCTGGCAACTTCACGATCCGCACCAACGGCGCCG ACGCCCCGGCCGCCATCGCTCGCAACGGCGGCGTGCTGAACCTGCGTGGCAACAGTGCCATTACGACAGCGGGCCGCGGC AGCCATGGCCTGTATGTGTACGCCGATGGCTCCAGCCTGACGGCGCAGAACGCGCAGGTCCGCACCGAAGGCCCATCCGC CCTTGGCGCGCTCGCGACGCAGCACGGCGCCATCACGCTGGCCGATAGCACCATCACCACGACTGGCCCAGGCAGCCACG GATTGGCCGTCCATGAGGGCGCCAGCATTGTCGCGCGCAATGTGACAGTCAACACGTCGGGTCAGCAGGCCCATGGGGCC GAGCTCGCCAACGGCGCACGGCTCGACCTGTACAACGTGACCCTACGCAGCACCGGCAGCGGCGCTGGCCTCTACAGCCA TGCTGCCGACGCCAATGCACCTGTTACCGTGCTGATCGACGGCGGCCTTGTCGATACGGCGCAATCAGCCGCCCAGGTAG CGGGCAGCGATATGGATCTGACCGTGCGGAACGGGGCCATCCTGCGCGCCGGCACAGGACGCGTGGCCGAAGTCATGTCG ATGAACGGCCAGGCGGCACGACTCACCCTGGCAGCCGACCGCGCCACGCTGAACGGTGACATCGTTGCCGATGCCGCCGG CGGCAACATTGCAGATGTCACGTTGACCAACAGAACAGTGCTGACAGGGGCCGTCACCGGCGCACGCACGCTTGGCGTAC AGCAAAGCCAGTGGACCGTCACTGCCGACAGCACCGTCAGCACGCTGACCAACAGCGGGGCCATCGTCTTCGGTGATGGC TTTCACCTGCTCGCCACGCGTAGCTACACCGGCCAGTCCGGCAATCTGACGCTCAATACCCGACTGGGCATCGACGAATC ACCGTCCGATCGCCTGCAGGTCGCAGACATGGCATCCGGCACCACGGCGCTGCGCATACGCAATGCCGGTGGCCCCGGCG CCACCACGACCGGCAACGGCATACTCGTCATCGACGCCCACGCCAGTGAACCGCATGCCTTTGCGCTGGCCGGCCCCGTG GTCGCAGGCCCGTACGAGTACACGCTGCAGCGCGGCAGCACCGACGCGAGCGCGCCGCAGAGCTGGTACCTGCGCTCGAC ACTCGACTGTCCGGGCGCGGGAGCGCCGTCCCCGCCCTGCCCTGCGCCGAAGCCATCGCCCGCACCTCCTGGTCCTGTAC CGCCGATTCCCAACTACCGGCCTGAAGTCTCGCTCTATACCGCCATCGCACCGCTGGCGCTTCAGTACGGCCGCTCGCTG ATGGACACGCTGCATGAACGCATGGGCGAGCAGGCCGTGCTGCGCAACCGCAGCGACCTTTCAGGCGAGCCGGTGCCCAG CGCTGGCTGGGGCCGCGTCATCGGCATGCAGGGCAATCGCGATGGCGGCCAGCGTGGCATCTACGGCAAGACACCGAGCT ACGACTATCGCTTCGCCGGCATGCAAATCGGCGCAGACCTGCTGCGCCACACGCATGACGACGGACGCCGCGACCACGCC GGCGTCTATGGCGCCATCGGCTACGCGGGCATGGATGTCGATCACTTCACCGGCGTGCGTGCCGGCACCAACCGCTTCGA CGGCTACACGGTCGGCAGCTACTGGACCCACTACGGCCTGCAGGACTGGTACTTGGACGGCGTGATTCAGGGCACCTGGT ACAACGTGCGCGCAAGCTCGAACCGCGGCCTGCCCGAACTGACCACCCATGGCGTCGGGCTTGCCTCATCCATCGAAGCA GGCTATCCGTTTGCCTTGGGCCAGGGCTGGGTGCTGGAACCGCAATCGCAACTGCTGTACCAGTGGGTGAAGCTCGACGA CTCGTCGGATGCGGGCGCCACCGTGCACTTCGACAACGTCCGCTCGCTGGCGGGCCGTGTCGGCGCACGAATCGCCAGAA CATGGCAAGACGACGAAGCTGTCCAGCCGCGCCAGTTCACCGTGTGGGCACGTGTATCGGCGTGGTATGAATTTCTTGGC GATCCGCGCACGGCGTTTTCCACTGCATCGGGGTTCATCCCGTTCCAGGCAGATCTGTCGGGCGGCTGGAGCGAACTCAA GGCCGGTTTCAGCGCAGAGTTCCGGCGCAACCTGTTCGCCTACGCCAGTGCCGGATACCAGCGCGGATTCGATGGCACGC GGCAGGCCTGGGACGGCAAGCTTGGCGTGCGGTTCAACTGGTAA
Upstream 100 bases:
>100_bases ACACTTTATCGGGCGCTCAAAAAACTGCAATTGCGTACGCCCTTTGCTGCCGTTAGTGTCCCTTTCGGTTTTCATAACGT GCCGCCCGGCGCGCCCGCTT
Downstream 100 bases:
>100_bases GCCCGGGACAACAAAAAACCCGCCGCATCACTGCGGCGGGTTTTTGGCAAGCACATGAAGGCGACATTGCTGTCAGGCTT CGCGCTTACTGGGCAACTCC
Product: Outer membrane autotransporter barrel
Products: NA
Alternate protein names: AG43; Fluffing protein [H]
Number of amino acids: Translated: 947; Mature: 947
Protein sequence:
>947_residues MLARSSLALLIFGAMPGVPEAEAAECSPWQGGKAVANACELTLAGGTIDTGRGDYQAAVTAQDGGIVTATGPLKLFTAGN DATGIFAQSQGKITLTVPGNSVMTSGKNSYGVQSFGSQYITAQATIVTSGEQSHAAFEDFGGAIRLTDSDLTTSGARAAG AAIQGGGVIDLEGTTTITTRGDSAPGLFATDAGSRGILGVNGAGNFTIRTNGADAPAAIARNGGVLNLRGNSAITTAGRG SHGLYVYADGSSLTAQNAQVRTEGPSALGALATQHGAITLADSTITTTGPGSHGLAVHEGASIVARNVTVNTSGQQAHGA ELANGARLDLYNVTLRSTGSGAGLYSHAADANAPVTVLIDGGLVDTAQSAAQVAGSDMDLTVRNGAILRAGTGRVAEVMS MNGQAARLTLAADRATLNGDIVADAAGGNIADVTLTNRTVLTGAVTGARTLGVQQSQWTVTADSTVSTLTNSGAIVFGDG FHLLATRSYTGQSGNLTLNTRLGIDESPSDRLQVADMASGTTALRIRNAGGPGATTTGNGILVIDAHASEPHAFALAGPV VAGPYEYTLQRGSTDASAPQSWYLRSTLDCPGAGAPSPPCPAPKPSPAPPGPVPPIPNYRPEVSLYTAIAPLALQYGRSL MDTLHERMGEQAVLRNRSDLSGEPVPSAGWGRVIGMQGNRDGGQRGIYGKTPSYDYRFAGMQIGADLLRHTHDDGRRDHA GVYGAIGYAGMDVDHFTGVRAGTNRFDGYTVGSYWTHYGLQDWYLDGVIQGTWYNVRASSNRGLPELTTHGVGLASSIEA GYPFALGQGWVLEPQSQLLYQWVKLDDSSDAGATVHFDNVRSLAGRVGARIARTWQDDEAVQPRQFTVWARVSAWYEFLG DPRTAFSTASGFIPFQADLSGGWSELKAGFSAEFRRNLFAYASAGYQRGFDGTRQAWDGKLGVRFNW
Sequences:
>Translated_947_residues MLARSSLALLIFGAMPGVPEAEAAECSPWQGGKAVANACELTLAGGTIDTGRGDYQAAVTAQDGGIVTATGPLKLFTAGN DATGIFAQSQGKITLTVPGNSVMTSGKNSYGVQSFGSQYITAQATIVTSGEQSHAAFEDFGGAIRLTDSDLTTSGARAAG AAIQGGGVIDLEGTTTITTRGDSAPGLFATDAGSRGILGVNGAGNFTIRTNGADAPAAIARNGGVLNLRGNSAITTAGRG SHGLYVYADGSSLTAQNAQVRTEGPSALGALATQHGAITLADSTITTTGPGSHGLAVHEGASIVARNVTVNTSGQQAHGA ELANGARLDLYNVTLRSTGSGAGLYSHAADANAPVTVLIDGGLVDTAQSAAQVAGSDMDLTVRNGAILRAGTGRVAEVMS MNGQAARLTLAADRATLNGDIVADAAGGNIADVTLTNRTVLTGAVTGARTLGVQQSQWTVTADSTVSTLTNSGAIVFGDG FHLLATRSYTGQSGNLTLNTRLGIDESPSDRLQVADMASGTTALRIRNAGGPGATTTGNGILVIDAHASEPHAFALAGPV VAGPYEYTLQRGSTDASAPQSWYLRSTLDCPGAGAPSPPCPAPKPSPAPPGPVPPIPNYRPEVSLYTAIAPLALQYGRSL MDTLHERMGEQAVLRNRSDLSGEPVPSAGWGRVIGMQGNRDGGQRGIYGKTPSYDYRFAGMQIGADLLRHTHDDGRRDHA GVYGAIGYAGMDVDHFTGVRAGTNRFDGYTVGSYWTHYGLQDWYLDGVIQGTWYNVRASSNRGLPELTTHGVGLASSIEA GYPFALGQGWVLEPQSQLLYQWVKLDDSSDAGATVHFDNVRSLAGRVGARIARTWQDDEAVQPRQFTVWARVSAWYEFLG DPRTAFSTASGFIPFQADLSGGWSELKAGFSAEFRRNLFAYASAGYQRGFDGTRQAWDGKLGVRFNW >Mature_947_residues MLARSSLALLIFGAMPGVPEAEAAECSPWQGGKAVANACELTLAGGTIDTGRGDYQAAVTAQDGGIVTATGPLKLFTAGN DATGIFAQSQGKITLTVPGNSVMTSGKNSYGVQSFGSQYITAQATIVTSGEQSHAAFEDFGGAIRLTDSDLTTSGARAAG AAIQGGGVIDLEGTTTITTRGDSAPGLFATDAGSRGILGVNGAGNFTIRTNGADAPAAIARNGGVLNLRGNSAITTAGRG SHGLYVYADGSSLTAQNAQVRTEGPSALGALATQHGAITLADSTITTTGPGSHGLAVHEGASIVARNVTVNTSGQQAHGA ELANGARLDLYNVTLRSTGSGAGLYSHAADANAPVTVLIDGGLVDTAQSAAQVAGSDMDLTVRNGAILRAGTGRVAEVMS MNGQAARLTLAADRATLNGDIVADAAGGNIADVTLTNRTVLTGAVTGARTLGVQQSQWTVTADSTVSTLTNSGAIVFGDG FHLLATRSYTGQSGNLTLNTRLGIDESPSDRLQVADMASGTTALRIRNAGGPGATTTGNGILVIDAHASEPHAFALAGPV VAGPYEYTLQRGSTDASAPQSWYLRSTLDCPGAGAPSPPCPAPKPSPAPPGPVPPIPNYRPEVSLYTAIAPLALQYGRSL MDTLHERMGEQAVLRNRSDLSGEPVPSAGWGRVIGMQGNRDGGQRGIYGKTPSYDYRFAGMQIGADLLRHTHDDGRRDHA GVYGAIGYAGMDVDHFTGVRAGTNRFDGYTVGSYWTHYGLQDWYLDGVIQGTWYNVRASSNRGLPELTTHGVGLASSIEA GYPFALGQGWVLEPQSQLLYQWVKLDDSSDAGATVHFDNVRSLAGRVGARIARTWQDDEAVQPRQFTVWARVSAWYEFLG DPRTAFSTASGFIPFQADLSGGWSELKAGFSAEFRRNLFAYASAGYQRGFDGTRQAWDGKLGVRFNW
Specific function: Controls colony form variation and autoaggregation. May function as an adhesin [H]
COG id: COG3468
COG function: function code MU; Type V secretory pathway, adhesin AidA
Gene ontology:
Cell location: Antigen 43 beta chain:Cell outer membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]
Homologues:
Organism=Escherichia coli, GI48994897, Length=812, Percent_Identity=26.7241379310345, Blast_Score=140, Evalue=3e-34, Organism=Escherichia coli, GI1787452, Length=847, Percent_Identity=24.5572609208973, Blast_Score=76, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005546 - InterPro: IPR006315 - InterPro: IPR012332 - InterPro: IPR011050 [H]
Pfam domain/function: PF03797 Autotransporter [H]
EC number: NA
Molecular weight: Translated: 97979; Mature: 97979
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLARSSLALLIFGAMPGVPEAEAAECSPWQGGKAVANACELTLAGGTIDTGRGDYQAAVT CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCEEEEEEECCEEECCCCCEEEEEE AQDGGIVTATGPLKLFTAGNDATGIFAQSQGKITLTVPGNSVMTSGKNSYGVQSFGSQYI ECCCCEEEECCCEEEEECCCCCCEEEEECCCEEEEEECCCCEEECCCCCCCHHHHCCEEE TAQATIVTSGEQSHAAFEDFGGAIRLTDSDLTTSGARAAGAAIQGGGVIDLEGTTTITTR EEEEEEEECCCCCHHHHHHCCCEEEEECCCCCCCCCHHCCCEECCCCEEEECCCEEEEEC GDSAPGLFATDAGSRGILGVNGAGNFTIRTNGADAPAAIARNGGVLNLRGNSAITTAGRG CCCCCCEEEECCCCCCEEEECCCCCEEEEECCCCCCHHHCCCCCEEEECCCCEEEECCCC SHGLYVYADGSSLTAQNAQVRTEGPSALGALATQHGAITLADSTITTTGPGSHGLAVHEG CCCEEEEECCCCEEECCCEEEECCCHHHHHHHHCCCEEEEECCEEEECCCCCCCEEEECC ASIVARNVTVNTSGQQAHGAELANGARLDLYNVTLRSTGSGAGLYSHAADANAPVTVLID CEEEEEEEEEECCCCCCCCHHHCCCCEEEEEEEEEECCCCCCCEEECCCCCCCCEEEEEC GGLVDTAQSAAQVAGSDMDLTVRNGAILRAGTGRVAEVMSMNGQAARLTLAADRATLNGD CCCCHHHHHHHHHCCCCCEEEEECCEEEEECCCCHHHHHHCCCCEEEEEEEECCEECCCC IVADAAGGNIADVTLTNRTVLTGAVTGARTLGVQQSQWTVTADSTVSTLTNSGAIVFGDG EEEECCCCCEEEEEEECCEEEEEECCCHHHCCCCCCEEEEEECCHHHHHCCCCEEEEECC FHLLATRSYTGQSGNLTLNTRLGIDESPSDRLQVADMASGTTALRIRNAGGPGATTTGNG EEEEEEEECCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCE ILVIDAHASEPHAFALAGPVVAGPYEYTLQRGSTDASAPQSWYLRSTLDCPGAGAPSPPC EEEEECCCCCCCEEEEECCEEECCHHEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCC PAPKPSPAPPGPVPPIPNYRPEVSLYTAIAPLALQYGRSLMDTLHERMGEQAVLRNRSDL CCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC SGEPVPSAGWGRVIGMQGNRDGGQRGIYGKTPSYDYRFAGMQIGADLLRHTHDDGRRDHA CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCCCCCCCC GVYGAIGYAGMDVDHFTGVRAGTNRFDGYTVGSYWTHYGLQDWYLDGVIQGTWYNVRASS CEEEEEEECCCCHHHHCCCCCCCCCCCCEEECCHHHHCCCCCEEECEEEECEEEEEEECC NRGLPELTTHGVGLASSIEAGYPFALGQGWVLEPQSQLLYQWVKLDDSSDAGATVHFDNV CCCCCCHHHCCCCCHHCCCCCCCEEECCCCEECCHHHHHHHHHCCCCCCCCCCEEEEHHH RSLAGRVGARIARTWQDDEAVQPRQFTVWARVSAWYEFLGDPRTAFSTASGFIPFQADLS HHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHCCCHHHHHHCCCCEEEEECCC GGWSELKAGFSAEFRRNLFAYASAGYQRGFDGTRQAWDGKLGVRFNW CCHHHHHCCCCHHHHHHHHHHHHCCHHCCCCCCHHHCCCCEEEEECC >Mature Secondary Structure MLARSSLALLIFGAMPGVPEAEAAECSPWQGGKAVANACELTLAGGTIDTGRGDYQAAVT CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCEEEEEEECCEEECCCCCEEEEEE AQDGGIVTATGPLKLFTAGNDATGIFAQSQGKITLTVPGNSVMTSGKNSYGVQSFGSQYI ECCCCEEEECCCEEEEECCCCCCEEEEECCCEEEEEECCCCEEECCCCCCCHHHHCCEEE TAQATIVTSGEQSHAAFEDFGGAIRLTDSDLTTSGARAAGAAIQGGGVIDLEGTTTITTR EEEEEEEECCCCCHHHHHHCCCEEEEECCCCCCCCCHHCCCEECCCCEEEECCCEEEEEC GDSAPGLFATDAGSRGILGVNGAGNFTIRTNGADAPAAIARNGGVLNLRGNSAITTAGRG CCCCCCEEEECCCCCCEEEECCCCCEEEEECCCCCCHHHCCCCCEEEECCCCEEEECCCC SHGLYVYADGSSLTAQNAQVRTEGPSALGALATQHGAITLADSTITTTGPGSHGLAVHEG CCCEEEEECCCCEEECCCEEEECCCHHHHHHHHCCCEEEEECCEEEECCCCCCCEEEECC ASIVARNVTVNTSGQQAHGAELANGARLDLYNVTLRSTGSGAGLYSHAADANAPVTVLID CEEEEEEEEEECCCCCCCCHHHCCCCEEEEEEEEEECCCCCCCEEECCCCCCCCEEEEEC GGLVDTAQSAAQVAGSDMDLTVRNGAILRAGTGRVAEVMSMNGQAARLTLAADRATLNGD CCCCHHHHHHHHHCCCCCEEEEECCEEEEECCCCHHHHHHCCCCEEEEEEEECCEECCCC IVADAAGGNIADVTLTNRTVLTGAVTGARTLGVQQSQWTVTADSTVSTLTNSGAIVFGDG EEEECCCCCEEEEEEECCEEEEEECCCHHHCCCCCCEEEEEECCHHHHHCCCCEEEEECC FHLLATRSYTGQSGNLTLNTRLGIDESPSDRLQVADMASGTTALRIRNAGGPGATTTGNG EEEEEEEECCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCE ILVIDAHASEPHAFALAGPVVAGPYEYTLQRGSTDASAPQSWYLRSTLDCPGAGAPSPPC EEEEECCCCCCCEEEEECCEEECCHHEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCC PAPKPSPAPPGPVPPIPNYRPEVSLYTAIAPLALQYGRSLMDTLHERMGEQAVLRNRSDL CCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC SGEPVPSAGWGRVIGMQGNRDGGQRGIYGKTPSYDYRFAGMQIGADLLRHTHDDGRRDHA CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCCCCCCCC GVYGAIGYAGMDVDHFTGVRAGTNRFDGYTVGSYWTHYGLQDWYLDGVIQGTWYNVRASS CEEEEEEECCCCHHHHCCCCCCCCCCCCEEECCHHHHCCCCCEEECEEEECEEEEEEECC NRGLPELTTHGVGLASSIEAGYPFALGQGWVLEPQSQLLYQWVKLDDSSDAGATVHFDNV CCCCCCHHHCCCCCHHCCCCCCCEEECCCCEECCHHHHHHHHHCCCCCCCCCCEEEEHHH RSLAGRVGARIARTWQDDEAVQPRQFTVWARVSAWYEFLGDPRTAFSTASGFIPFQADLS HHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHCCCHHHHHHCCCCEEEEECCC GGWSELKAGFSAEFRRNLFAYASAGYQRGFDGTRQAWDGKLGVRFNW CCHHHHHCCCCHHHHHHHHHHHHCCHHCCCCCCHHHCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503; 2661530; 9298646; 9103983 [H]