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The map label for this gene is ymdB [C]

Identifier: 73541111

GI number: 73541111

Start: 1533806

End: 1534327

Strand: Reverse

Name: ymdB [C]

Synonym: Reut_A1417

Alternate gene names: 73541111

Gene position: 1534327-1533806 (Counterclockwise)

Preceding gene: 73541112

Following gene: 73541098

Centisome position: 40.31

GC content: 63.03

Gene sequence:

>522_bases
ATGACAGGTGAACACTTGCAGGTTGTGCATGGAGACATCACCCGGATGGAAGTTGATGCCGTCGTCAATGCGGCGAATAG
CGGGCTGCTAGGCGGGGGCGGCGTGGATGGCGCGATCCACGGGGCCGGCGGCCCCGCGATCATGGCGGCCTGCAAGGCCA
TCCGCGACGCACAGGGCGGCTGCCCGACCGGCGAAGCGGTGATCACCACCGGCGGGCTGCTGCCGGCGCCTTACGTGATT
CATGCGGTCGGGCCGGTATGGCATGGCGGTTCGCGGGATGAAGATCAGCAACTGGCAAGCGCGTATCGAAACAGTATTCG
GCTTGCAGCCGAGCATCATCTGCGTACGGTGGCGTTTCCGAATATCAGCACAGGCATCTATGGCTTTCCGCGCGAGCGCG
CGGCGGATATTGCCATTCGGGCCGTGCGTGAGGCGCTGGCCGCGGCGCCGGGGATTGAGCAGGTGACGTTTGTTTGTTTT
GATGAAGAGAATTATCGGCTCTATCGCGAGAGGTTAGCGTGA

Upstream 100 bases:

>100_bases
AGGCCAGCGCGGCGGATTATCGGCGTATGCTTGGAGCGTCCATGTAGGCCTGCCTGGCCCTGGCCGGCCCGGGACATTCA
TCCACTGCGGGAGACAGCGA

Downstream 100 bases:

>100_bases
GTGCGGGCTTCTGGTCGAGTCTGGGTTATCGCCCTTGACCGGCGCCGCTGTTTCGCCGGCGTAGCCGGCGACTTACTTCT
TGTCCGAGCGACAGAAGTCG

Product: Appr-1-p processing

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MTGEHLQVVHGDITRMEVDAVVNAANSGLLGGGGVDGAIHGAGGPAIMAACKAIRDAQGGCPTGEAVITTGGLLPAPYVI
HAVGPVWHGGSRDEDQQLASAYRNSIRLAAEHHLRTVAFPNISTGIYGFPRERAADIAIRAVREALAAAPGIEQVTFVCF
DEENYRLYRERLA

Sequences:

>Translated_173_residues
MTGEHLQVVHGDITRMEVDAVVNAANSGLLGGGGVDGAIHGAGGPAIMAACKAIRDAQGGCPTGEAVITTGGLLPAPYVI
HAVGPVWHGGSRDEDQQLASAYRNSIRLAAEHHLRTVAFPNISTGIYGFPRERAADIAIRAVREALAAAPGIEQVTFVCF
DEENYRLYRERLA
>Mature_172_residues
TGEHLQVVHGDITRMEVDAVVNAANSGLLGGGGVDGAIHGAGGPAIMAACKAIRDAQGGCPTGEAVITTGGLLPAPYVIH
AVGPVWHGGSRDEDQQLASAYRNSIRLAAEHHLRTVAFPNISTGIYGFPRERAADIAIRAVREALAAAPGIEQVTFVCFD
EENYRLYRERLA

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=173, Percent_Identity=49.1329479768786, Blast_Score=164, Evalue=3e-41,
Organism=Homo sapiens, GI13569840, Length=172, Percent_Identity=46.5116279069767, Blast_Score=151, Evalue=2e-37,
Organism=Homo sapiens, GI20336746, Length=173, Percent_Identity=32.9479768786127, Blast_Score=105, Evalue=2e-23,
Organism=Homo sapiens, GI154813199, Length=140, Percent_Identity=39.2857142857143, Blast_Score=99, Evalue=1e-21,
Organism=Homo sapiens, GI93141018, Length=176, Percent_Identity=28.9772727272727, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI93141020, Length=176, Percent_Identity=28.9772727272727, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI4758496, Length=176, Percent_Identity=28.9772727272727, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI207450721, Length=155, Percent_Identity=34.8387096774194, Blast_Score=88, Evalue=4e-18,
Organism=Homo sapiens, GI8923143, Length=155, Percent_Identity=34.8387096774194, Blast_Score=88, Evalue=5e-18,
Organism=Homo sapiens, GI226371718, Length=149, Percent_Identity=36.241610738255, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI226371716, Length=149, Percent_Identity=36.241610738255, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI226371714, Length=149, Percent_Identity=36.241610738255, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI226371712, Length=149, Percent_Identity=36.241610738255, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI226371710, Length=149, Percent_Identity=36.241610738255, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI226371706, Length=149, Percent_Identity=36.241610738255, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI8923920, Length=176, Percent_Identity=27.8409090909091, Blast_Score=86, Evalue=2e-17,
Organism=Escherichia coli, GI1787283, Length=167, Percent_Identity=58.6826347305389, Blast_Score=198, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI17538214, Length=169, Percent_Identity=42.0118343195266, Blast_Score=122, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24586353, Length=137, Percent_Identity=33.5766423357664, Blast_Score=73, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18169; Mature: 18038

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGEHLQVVHGDITRMEVDAVVNAANSGLLGGGGVDGAIHGAGGPAIMAACKAIRDAQGG
CCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCC
CPTGEAVITTGGLLPAPYVIHAVGPVWHGGSRDEDQQLASAYRNSIRLAAEHHLRTVAFP
CCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEEECC
NISTGIYGFPRERAADIAIRAVREALAAAPGIEQVTFVCFDEENYRLYRERLA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCC
>Mature Secondary Structure 
TGEHLQVVHGDITRMEVDAVVNAANSGLLGGGGVDGAIHGAGGPAIMAACKAIRDAQGG
CCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCC
CPTGEAVITTGGLLPAPYVIHAVGPVWHGGSRDEDQQLASAYRNSIRLAAEHHLRTVAFP
CCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEEECC
NISTGIYGFPRERAADIAIRAVREALAAAPGIEQVTFVCFDEENYRLYRERLA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7851418 [H]