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The map label for this gene is slyD [H]

Identifier: 73540811

GI number: 73540811

Start: 1201573

End: 1202097

Strand: Direct

Name: slyD [H]

Synonym: Reut_A1109

Alternate gene names: 73540811

Gene position: 1201573-1202097 (Clockwise)

Preceding gene: 73540808

Following gene: 73540818

Centisome position: 31.57

GC content: 61.14

Gene sequence:

>525_bases
TTGAAAATCGCTAAGAACACGGTGGTGTCCGTGGTGTACAAGCTGTCGGATGCGCAAGGCAATCTGATCGAGGAATCGGA
TGAGGCCATGGTCTACTTGCACGGCGGCTATGATGGCACGTTCCCCAAGATCGAGGAAGCACTCGACGGCCACGACACTG
GCTTCGAGACTCAGTTGCAGCTGGAACCCGAAGACGCATTTGGCGACTACGACGCCGACCTCGTCAAGGTCGAGCCGCGC
GACCGTTTCCCCGAGCCGCTCGAAGTCGGCATGCAGTTCGAAGGCATGCCGGAGGATGGCGATGAAGAAGACTCCGTCAT
CTACACCGTGACCGATGTGGCCGAAGACAAGGTGGTGCTCGACGGCAACCATCCGCTGGCCGGCATGGCGCTGCGCTTCT
GGCTGAAGGTGTCCGAAGTGCGTGAAGCCACGGCCGAGGAAATCGAACACGGCCACGCGCACGGCGCATCGGGCGTCGAG
GTGGCCGATGAAGATGACGACGACACCCCGCGTACGCTGCACTGA

Upstream 100 bases:

>100_bases
GGCGTCATGCCACCTAGAAGGCCCAGCGGTGCATCCGGATCGACGGGGCCAGGTGGCAGGGCGTGCGCGTATAATGCGGA
ATCGTTCATGGAGTCAAGAA

Downstream 100 bases:

>100_bases
GATCTCGCGAAAGCGATGTCAGCAAAAGAGCCGGTCATGCCGGCTCTTTTGTTTTATGGCGAGCGCCGGCTAATTTCCGA
CTCCATCCTTCAGCACCACG

Product: fkbp-type peptidyl-prolyl cis-trans isomerase (rotamase) protein

Products: NA

Alternate protein names: PPIase; Metallochaperone slyD [H]

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MKIAKNTVVSVVYKLSDAQGNLIEESDEAMVYLHGGYDGTFPKIEEALDGHDTGFETQLQLEPEDAFGDYDADLVKVEPR
DRFPEPLEVGMQFEGMPEDGDEEDSVIYTVTDVAEDKVVLDGNHPLAGMALRFWLKVSEVREATAEEIEHGHAHGASGVE
VADEDDDDTPRTLH

Sequences:

>Translated_174_residues
MKIAKNTVVSVVYKLSDAQGNLIEESDEAMVYLHGGYDGTFPKIEEALDGHDTGFETQLQLEPEDAFGDYDADLVKVEPR
DRFPEPLEVGMQFEGMPEDGDEEDSVIYTVTDVAEDKVVLDGNHPLAGMALRFWLKVSEVREATAEEIEHGHAHGASGVE
VADEDDDDTPRTLH
>Mature_174_residues
MKIAKNTVVSVVYKLSDAQGNLIEESDEAMVYLHGGYDGTFPKIEEALDGHDTGFETQLQLEPEDAFGDYDADLVKVEPR
DRFPEPLEVGMQFEGMPEDGDEEDSVIYTVTDVAEDKVVLDGNHPLAGMALRFWLKVSEVREATAEEIEHGHAHGASGVE
VADEDDDDTPRTLH

Specific function: Also involved in hydrogenase metallocenter assembly, probably by participating in the nickel insertion step. This function in hydrogenase biosynthesis requires chaperone activity and the presence of the metal-binding domain, but not PPIase activity [H]

COG id: COG1047

COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 2

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789748, Length=155, Percent_Identity=40, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001179 [H]

Pfam domain/function: PF00254 FKBP_C [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 19221; Mature: 19221

Theoretical pI: Translated: 3.90; Mature: 3.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIAKNTVVSVVYKLSDAQGNLIEESDEAMVYLHGGYDGTFPKIEEALDGHDTGFETQLQ
CCCCHHHHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCCHHHHHHHCCCCCCCEEEEE
LEPEDAFGDYDADLVKVEPRDRFPEPLEVGMQFEGMPEDGDEEDSVIYTVTDVAEDKVVL
ECCCCCCCCCCCEEEEECCCCCCCCHHHCCEEECCCCCCCCCCCCEEEEEECCCCCEEEE
DGNHPLAGMALRFWLKVSEVREATAEEIEHGHAHGASGVEVADEDDDDTPRTLH
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCC
>Mature Secondary Structure
MKIAKNTVVSVVYKLSDAQGNLIEESDEAMVYLHGGYDGTFPKIEEALDGHDTGFETQLQ
CCCCHHHHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCCHHHHHHHCCCCCCCEEEEE
LEPEDAFGDYDADLVKVEPRDRFPEPLEVGMQFEGMPEDGDEEDSVIYTVTDVAEDKVVL
ECCCCCCCCCCCEEEEECCCCCCCCHHHCCEEECCCCCCCCCCCCEEEEEECCCCCEEEE
DGNHPLAGMALRFWLKVSEVREATAEEIEHGHAHGASGVEVADEDDDDTPRTLH
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]