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The map label for this gene is ycfD [H]

Identifier: 73540810

GI number: 73540810

Start: 1200353

End: 1201561

Strand: Reverse

Name: ycfD [H]

Synonym: Reut_A1108

Alternate gene names: 73540810

Gene position: 1201561-1200353 (Counterclockwise)

Preceding gene: 73540812

Following gene: 73540809

Centisome position: 31.57

GC content: 61.87

Gene sequence:

>1209_bases
ATGAACGATTCCGCATTATACGCGCACGCCCTGCCACCTGGCCCCGTCGATCCGGATGCACCGCTGGGCCTTCTAGGTGG
CATGACGCCCGCTGCTTTCATGCGCGATATCTGGCAACGGAAACCGCTGTTGATTCGACAGGCATTTCCCGAAATTGTGC
CGCCTGTGTCGCGCGAGGCGCTTTTCGCGCTAGCCGACCGGGACGAAGTCGAGTCGCGCCTGGTGACGCACTTCCGCAAC
AGGTGGAAGCTCGAGAACGGCCCGTTCGCCGCCGACAACCTGCCGACCATCAAGACTAAACAGTGGACCCTGCTGGTGCA
GGGTGTCAACCTCCATGACGCGGCCGCGGCCGACCTGATGGGTCAGTTCCGCTTCGTGCCCGACGCGCGCCTGGACGACC
TGATGATCAGCTACGCAACCGACGGTGGCGGTGTCGGTCCGCACTTCGATTCCTACGACGTGTTTCTGCTGCAGGTTTCG
GGCCGGCGCCGCTGGCGCATCTCGTCGCAGACGAAGCTCGATCTCGTACCGGATATGCCGCTGAAGATCCTGGCCGACTT
CAGCGCCGAAGAGGAATGGGTGCTCGAGCCCGGCGACATGCTCTACCTGCCCCCGCAGTATGCGCACGATGGCATTGCCG
AAGGCGAATGCATGACATGCTCGATCGGCTTCCGCGCGCCTGCGTACCGCGAACTTGCGGGCCATTTCCTTGCGTGGCTG
TCCGAGACTGTCGAAGACAACGAAGACCTCGGCGGTCGTTATGCGGATCCTGGCGAGCGTGCGGCAAAGCATCCCGCGCA
ACTGCCGGCCGGCATGGCGAAGGCTGTCGCGCAGCGCCTCAAGGCCTTGCAATGGAACGGTGCGATGGTGTCGGAATTCG
TGGGTACCTACCTGTCCGAACCGAAGCCAACGGTCGAGTTTGCCCAGGTGCCCGATATCCCGATGCGGCAGTATGCCAAG
CTCGCGCGCGCGCATGGCGTCGTATTGGCACCCGGTTCGATTGCGCTCTATGACAACACGCATTTCTTCCTGAATGGTGA
AGCATACGAGCCTGAGCCGGAACTGGCACAGTGGTTGCGTCGATTGGCCGATTATCGGCAACTTTCCGCAAAGGAAGTGG
AGACATGTGCCGGCCTGCCGGATCTGCTTGATACCTTCCATCACTGGACACTAGAGGGCTGGTTGCAGCTTTCACCGGCG
GCACTGTAA

Upstream 100 bases:

>100_bases
ATGGCCTCATCCGATTCCTCGATCAGATTGCCTTGCGCATCCGACAGCTTGTACACCACGGACACCACCGTGTTCTTAGC
GATTTTCAATTCTTGACTCC

Downstream 100 bases:

>100_bases
TAATGCGTAACATTGCAATTCCGTAAATTTTCACGCTACACAAGCCGGGAAAACGCGGATATAATCGTCGGCTGGCTAGT
ACTGTGTACCACTGCATTTG

Product: cupin region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MNDSALYAHALPPGPVDPDAPLGLLGGMTPAAFMRDIWQRKPLLIRQAFPEIVPPVSREALFALADRDEVESRLVTHFRN
RWKLENGPFAADNLPTIKTKQWTLLVQGVNLHDAAAADLMGQFRFVPDARLDDLMISYATDGGGVGPHFDSYDVFLLQVS
GRRRWRISSQTKLDLVPDMPLKILADFSAEEEWVLEPGDMLYLPPQYAHDGIAEGECMTCSIGFRAPAYRELAGHFLAWL
SETVEDNEDLGGRYADPGERAAKHPAQLPAGMAKAVAQRLKALQWNGAMVSEFVGTYLSEPKPTVEFAQVPDIPMRQYAK
LARAHGVVLAPGSIALYDNTHFFLNGEAYEPEPELAQWLRRLADYRQLSAKEVETCAGLPDLLDTFHHWTLEGWLQLSPA
AL

Sequences:

>Translated_402_residues
MNDSALYAHALPPGPVDPDAPLGLLGGMTPAAFMRDIWQRKPLLIRQAFPEIVPPVSREALFALADRDEVESRLVTHFRN
RWKLENGPFAADNLPTIKTKQWTLLVQGVNLHDAAAADLMGQFRFVPDARLDDLMISYATDGGGVGPHFDSYDVFLLQVS
GRRRWRISSQTKLDLVPDMPLKILADFSAEEEWVLEPGDMLYLPPQYAHDGIAEGECMTCSIGFRAPAYRELAGHFLAWL
SETVEDNEDLGGRYADPGERAAKHPAQLPAGMAKAVAQRLKALQWNGAMVSEFVGTYLSEPKPTVEFAQVPDIPMRQYAK
LARAHGVVLAPGSIALYDNTHFFLNGEAYEPEPELAQWLRRLADYRQLSAKEVETCAGLPDLLDTFHHWTLEGWLQLSPA
AL
>Mature_402_residues
MNDSALYAHALPPGPVDPDAPLGLLGGMTPAAFMRDIWQRKPLLIRQAFPEIVPPVSREALFALADRDEVESRLVTHFRN
RWKLENGPFAADNLPTIKTKQWTLLVQGVNLHDAAAADLMGQFRFVPDARLDDLMISYATDGGGVGPHFDSYDVFLLQVS
GRRRWRISSQTKLDLVPDMPLKILADFSAEEEWVLEPGDMLYLPPQYAHDGIAEGECMTCSIGFRAPAYRELAGHFLAWL
SETVEDNEDLGGRYADPGERAAKHPAQLPAGMAKAVAQRLKALQWNGAMVSEFVGTYLSEPKPTVEFAQVPDIPMRQYAK
LARAHGVVLAPGSIALYDNTHFFLNGEAYEPEPELAQWLRRLADYRQLSAKEVETCAGLPDLLDTFHHWTLEGWLQLSPA
AL

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=319, Percent_Identity=36.0501567398119, Blast_Score=186, Evalue=2e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 44726; Mature: 44726

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDSALYAHALPPGPVDPDAPLGLLGGMTPAAFMRDIWQRKPLLIRQAFPEIVPPVSREA
CCCCCEEEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHH
LFALADRDEVESRLVTHFRNRWKLENGPFAADNLPTIKTKQWTLLVQGVNLHDAAAADLM
HHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHH
GQFRFVPDARLDDLMISYATDGGGVGPHFDSYDVFLLQVSGRRRWRISSQTKLDLVPDMP
HHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEECCCCEEEECCCCC
LKILADFSAEEEWVLEPGDMLYLPPQYAHDGIAEGECMTCSIGFRAPAYRELAGHFLAWL
HHHHCCCCCCCCEEECCCCEEEECCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
SETVEDNEDLGGRYADPGERAAKHPAQLPAGMAKAVAQRLKALQWNGAMVSEFVGTYLSE
HHHHCCCHHCCCCCCCCHHHHHCCCHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
PKPTVEFAQVPDIPMRQYAKLARAHGVVLAPGSIALYDNTHFFLNGEAYEPEPELAQWLR
CCCCEECCCCCCCCHHHHHHHHHHCCEEECCCCEEEEECEEEEECCCCCCCCHHHHHHHH
RLADYRQLSAKEVETCAGLPDLLDTFHHWTLEGWLQLSPAAL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEECCCCCC
>Mature Secondary Structure
MNDSALYAHALPPGPVDPDAPLGLLGGMTPAAFMRDIWQRKPLLIRQAFPEIVPPVSREA
CCCCCEEEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHH
LFALADRDEVESRLVTHFRNRWKLENGPFAADNLPTIKTKQWTLLVQGVNLHDAAAADLM
HHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHH
GQFRFVPDARLDDLMISYATDGGGVGPHFDSYDVFLLQVSGRRRWRISSQTKLDLVPDMP
HHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEECCCCEEEECCCCC
LKILADFSAEEEWVLEPGDMLYLPPQYAHDGIAEGECMTCSIGFRAPAYRELAGHFLAWL
HHHHCCCCCCCCEEECCCCEEEECCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
SETVEDNEDLGGRYADPGERAAKHPAQLPAGMAKAVAQRLKALQWNGAMVSEFVGTYLSE
HHHHCCCHHCCCCCCCCHHHHHCCCHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
PKPTVEFAQVPDIPMRQYAKLARAHGVVLAPGSIALYDNTHFFLNGEAYEPEPELAQWLR
CCCCEECCCCCCCCHHHHHHHHHHCCEEECCCCEEEEECEEEEECCCCCCCCHHHHHHHH
RLADYRQLSAKEVETCAGLPDLLDTFHHWTLEGWLQLSPAAL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]