| Definition | Ralstonia eutropha JMP134 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007347 |
| Length | 3,806,533 |
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The map label for this gene is alaS [H]
Identifier: 73540553
GI number: 73540553
Start: 920856
End: 923480
Strand: Direct
Name: alaS [H]
Synonym: Reut_A0850
Alternate gene names: 73540553
Gene position: 920856-923480 (Clockwise)
Preceding gene: 73540549
Following gene: 73540554
Centisome position: 24.19
GC content: 64.88
Gene sequence:
>2625_bases ATGAAAGTCTCAGACATTCGCAGCAAGTTCCTGCAGTTCTTCGAATCGAAGGGCCATACCGTGGTCCGCTCGTCCAGCCT GGTGCCGGCGAATGACCCGACGCTGCTGTTCACCAACTCCGGCATGGTGCAGTTCAAGGACGTGTTCCTGGGCACCGACA AGCGCCCGTACAGCCGCGCGACTTCGTCGCAGCGTTCGGTGCGCGCCGGCGGCAAGCACAATGACCTGGAGAACGTGGGC TACACCGCCCGCCACCATACGTTCTTCGAGATGCTGGGCAACTTCTCGTTCGGCGACTACTTCAAGCGTGAAGCGATCCA GTACGCGTGGGAACTGCTGACCAAGGTCTACCAGCTCCCGGCCGAGAAGCTGTGGGTGACGGTCTATGCGGAAGACGACG AAGCCTATGACATCTGGGCCAAGGAAGTCGGCGTGCCGACCGAGCGCATCGTGCGCATCGGCGACAACAAGGGTTCGCGC TACGCATCGGACAACTTCTGGCAGATGGCCGACACCGGCCCGTGCGGCCCGTGCTCGGAAATCTTCTTCGACCACGGCCC GGACGTGTGGGGCGGCCCCCCGGGATCGCCCGAGGAAGACGGCGACCGCTACATCGAGATCTGGAACCTCGTGTTCATGC AGTTCAACCGCGACGAGCAGGGCAACATGACGCCGCTGCCCAAGCCATGCGTGGACACCGGCATGGGCCTGGAGCGCATT GCCGCGGTGCTGCAGCACGTGCACAGCAACTACGAGATCGACCTGTTCCAGGCGCTGATCAAGGCCGCCGCGCGTGAAAC GCATATCGACAACCTGAACCAGAACTCGCTGAAGGTCATCGCCGACCATATCCGCGCGTGCTCGTTCCTGATCGTCGACG GCGTGATCCCCGGCAACGAAGGCCGGGGCTACGTGCTGCGCCGTATCGTGCGCCGCGCGATCCGCCATGGCTACAAGCTG GGCCAGAAGACCCCGTTCTTCCACAAGCTCGTGGCTGACCTCGTGGCGCAGATGGGTGAAGCCTATCCGGAACTGGCCGA CGCCCAGGGCCGTGTGACCGAAGTGCTGAAGGCCGAGGAAGAGCGTTTCTTCGAGACCATCGAGAACGGCATGTCGATCC TCGACGCTGCGCTGGCCGACCTGAAGCTCAAGGGCGGCAAGACGCTCGACGGCGAACTGGCGTTCAAGCTGCACGACACC TTCGGCTTCCCGCTGGACCTGACGCAGGACGTCTGCCGCGAGCAGGAAATCGCCGTGGACGAGGCCGCGTTCGACGCCGC CATGAACCGCCAGCGCGAGCAGGCACGTGCCGCCGGCAAGTTCAAGATGGCCGCTGGTCTGGAATACTCGGGCGACAAGA CCGTGTTCCATGGCTACGAAAAGCTGGAGCTGCCGCAGGCAAAGATCATCGCACTGTACGTGGACGGCGCTGCTGTCGAC GCCATGCAGCCGGGCCAGACCGGCGTGATCGTGCTCGACAACACCCCGTTCTACGCGGAATCCGGTGGCCAGGCTGGCGA CCAGGGCGTGCTCAAGGCTGGCAATGCCGTGTTCGCCGTGGCTGACACCACCAAGATCCAGGCCGACGTGTTCGGTCACC AGGGCACGCTGGAAGGCGGCGCGCTGAAGGTCGGCGACACCGTGCAGCCGCAGGTCGATGCACTGCGCCGCGCGCGCACC GTGCGCAACCACTCGGCCACCCACCTGATGCACAAGGCGCTGCGCGAAGTGCTGGGCACCCACGTGCAACAGAAGGGCTC GCTGGTCGATGCCGACAAGACGCGTTTCGACTTCTCGCACAACGCGCCGATGACCGACGAGCAGATCCGTCGCGTCGAAG ACATCGTCAACGCCGAAATTCTGCGCAACGAAGACACGCACGCCGAGATCATGCCGTTCGACGACGCGGTCAAGAGCGGC GCGATGGCACTGTTCGGCGAGAAGTACGCCGATGACGTGCGCGTGCTGTCGATCGGCACCTCGAAGGAACTGTGTGGCGG CACCCACGTGCACCGCACCGGCGACATCGGCCTGTTCAAGATCGTGGTGGAAGGCGGTGTGGCCGCGGGCATCCGCCGCG TGGAAGCGATCACCGGCGACAACGCGCTGCACTACTTGCAGAAGCTCGACGCCAAGCTCAACGAAGCCGCTGCCGCGCTG AAGGCGCAGCCTTCGGAGCTGGTGCCGCGCATCGGCCAGGTGCAGGAGCAGGTACGCGCGCTCGAGAAGGAGTTGGAGCG CCTGAAGAGCAAGCTCGCTTCGTCGCAAGGCGACGAGCTCGCCGAGCAGGCGGTCGACGTGAAGGGCCTCAAGGTGCTGG CCGCCCAACTCGAAGGCGCAGATGTGAAGACGCTGCGCGAGACCATGGACAAGCTCAAGGACAAGCTGCAGAGCGCGGCG ATCGTGCTGGCCGCAGTGGCCGACGGCAAGGTCAGCCTGATCGCCGGCGTGACCGCCGATGCGACCGGCAAGGTCAAGGC TGGCGAGCTGGTCAACTTTGTCGCGCAGCAGGTTGGCGGCAAGGGCGGTGGCCGTCCGGATATGGCTCAGGCTGGCGGTA CCGAGCCGGGCAAGCTGCCGCAGGCGCTGTCGGGTGTGGTGGAGTGGGTGTCGGCGAAGGTTTAA
Upstream 100 bases:
>100_bases CATGCGTTTTTTGAGGCTGGCTTGCCCGTATAATCAACGGTTTGCAAATCCAACACTGATTCGTCGCGCCCTGCCTGCCG CGGGAAGCGTCCGCCATCCC
Downstream 100 bases:
>100_bases AGTTTTTCCGGCTAGGATAAAAGGGCGCCTCGGCGCCCTTTTTCTTTATCATCCAACGTCATGTATTGACCGTGTCCGGA ACCACCATGAGAGCCACAGT
Product: alanyl-tRNA synthetase
Products: NA
Alternate protein names: Alanine--tRNA ligase; AlaRS [H]
Number of amino acids: Translated: 874; Mature: 874
Protein sequence:
>874_residues MKVSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYSRATSSQRSVRAGGKHNDLENVG YTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKVYQLPAEKLWVTVYAEDDEAYDIWAKEVGVPTERIVRIGDNKGSR YASDNFWQMADTGPCGPCSEIFFDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEQGNMTPLPKPCVDTGMGLERI AAVLQHVHSNYEIDLFQALIKAAARETHIDNLNQNSLKVIADHIRACSFLIVDGVIPGNEGRGYVLRRIVRRAIRHGYKL GQKTPFFHKLVADLVAQMGEAYPELADAQGRVTEVLKAEEERFFETIENGMSILDAALADLKLKGGKTLDGELAFKLHDT FGFPLDLTQDVCREQEIAVDEAAFDAAMNRQREQARAAGKFKMAAGLEYSGDKTVFHGYEKLELPQAKIIALYVDGAAVD AMQPGQTGVIVLDNTPFYAESGGQAGDQGVLKAGNAVFAVADTTKIQADVFGHQGTLEGGALKVGDTVQPQVDALRRART VRNHSATHLMHKALREVLGTHVQQKGSLVDADKTRFDFSHNAPMTDEQIRRVEDIVNAEILRNEDTHAEIMPFDDAVKSG AMALFGEKYADDVRVLSIGTSKELCGGTHVHRTGDIGLFKIVVEGGVAAGIRRVEAITGDNALHYLQKLDAKLNEAAAAL KAQPSELVPRIGQVQEQVRALEKELERLKSKLASSQGDELAEQAVDVKGLKVLAAQLEGADVKTLRETMDKLKDKLQSAA IVLAAVADGKVSLIAGVTADATGKVKAGELVNFVAQQVGGKGGGRPDMAQAGGTEPGKLPQALSGVVEWVSAKV
Sequences:
>Translated_874_residues MKVSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYSRATSSQRSVRAGGKHNDLENVG YTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKVYQLPAEKLWVTVYAEDDEAYDIWAKEVGVPTERIVRIGDNKGSR YASDNFWQMADTGPCGPCSEIFFDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEQGNMTPLPKPCVDTGMGLERI AAVLQHVHSNYEIDLFQALIKAAARETHIDNLNQNSLKVIADHIRACSFLIVDGVIPGNEGRGYVLRRIVRRAIRHGYKL GQKTPFFHKLVADLVAQMGEAYPELADAQGRVTEVLKAEEERFFETIENGMSILDAALADLKLKGGKTLDGELAFKLHDT FGFPLDLTQDVCREQEIAVDEAAFDAAMNRQREQARAAGKFKMAAGLEYSGDKTVFHGYEKLELPQAKIIALYVDGAAVD AMQPGQTGVIVLDNTPFYAESGGQAGDQGVLKAGNAVFAVADTTKIQADVFGHQGTLEGGALKVGDTVQPQVDALRRART VRNHSATHLMHKALREVLGTHVQQKGSLVDADKTRFDFSHNAPMTDEQIRRVEDIVNAEILRNEDTHAEIMPFDDAVKSG AMALFGEKYADDVRVLSIGTSKELCGGTHVHRTGDIGLFKIVVEGGVAAGIRRVEAITGDNALHYLQKLDAKLNEAAAAL KAQPSELVPRIGQVQEQVRALEKELERLKSKLASSQGDELAEQAVDVKGLKVLAAQLEGADVKTLRETMDKLKDKLQSAA IVLAAVADGKVSLIAGVTADATGKVKAGELVNFVAQQVGGKGGGRPDMAQAGGTEPGKLPQALSGVVEWVSAKV >Mature_874_residues MKVSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYSRATSSQRSVRAGGKHNDLENVG YTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKVYQLPAEKLWVTVYAEDDEAYDIWAKEVGVPTERIVRIGDNKGSR YASDNFWQMADTGPCGPCSEIFFDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEQGNMTPLPKPCVDTGMGLERI AAVLQHVHSNYEIDLFQALIKAAARETHIDNLNQNSLKVIADHIRACSFLIVDGVIPGNEGRGYVLRRIVRRAIRHGYKL GQKTPFFHKLVADLVAQMGEAYPELADAQGRVTEVLKAEEERFFETIENGMSILDAALADLKLKGGKTLDGELAFKLHDT FGFPLDLTQDVCREQEIAVDEAAFDAAMNRQREQARAAGKFKMAAGLEYSGDKTVFHGYEKLELPQAKIIALYVDGAAVD AMQPGQTGVIVLDNTPFYAESGGQAGDQGVLKAGNAVFAVADTTKIQADVFGHQGTLEGGALKVGDTVQPQVDALRRART VRNHSATHLMHKALREVLGTHVQQKGSLVDADKTRFDFSHNAPMTDEQIRRVEDIVNAEILRNEDTHAEIMPFDDAVKSG AMALFGEKYADDVRVLSIGTSKELCGGTHVHRTGDIGLFKIVVEGGVAAGIRRVEAITGDNALHYLQKLDAKLNEAAAAL KAQPSELVPRIGQVQEQVRALEKELERLKSKLASSQGDELAEQAVDVKGLKVLAAQLEGADVKTLRETMDKLKDKLQSAA IVLAAVADGKVSLIAGVTADATGKVKAGELVNFVAQQVGGKGGGRPDMAQAGGTEPGKLPQALSGVVEWVSAKV
Specific function: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction:alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editin
COG id: COG0013
COG function: function code J; Alanyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI109148542, Length=965, Percent_Identity=37.5129533678756, Blast_Score=517, Evalue=1e-146, Organism=Homo sapiens, GI38569417, Length=762, Percent_Identity=36.745406824147, Blast_Score=448, Evalue=1e-126, Organism=Escherichia coli, GI1789048, Length=880, Percent_Identity=62.9545454545455, Blast_Score=1103, Evalue=0.0, Organism=Caenorhabditis elegans, GI17506981, Length=977, Percent_Identity=36.7451381780962, Blast_Score=543, Evalue=1e-154, Organism=Caenorhabditis elegans, GI17536681, Length=743, Percent_Identity=34.4549125168237, Blast_Score=388, Evalue=1e-108, Organism=Saccharomyces cerevisiae, GI6324911, Length=839, Percent_Identity=39.8092967818832, Blast_Score=556, Evalue=1e-159, Organism=Drosophila melanogaster, GI24582809, Length=979, Percent_Identity=35.7507660878447, Blast_Score=535, Evalue=1e-152, Organism=Drosophila melanogaster, GI45552267, Length=979, Percent_Identity=35.7507660878447, Blast_Score=535, Evalue=1e-152, Organism=Drosophila melanogaster, GI24658214, Length=860, Percent_Identity=30.5813953488372, Blast_Score=343, Evalue=3e-94,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002318 - InterPro: IPR018162 - InterPro: IPR018165 - InterPro: IPR018164 - InterPro: IPR023033 - InterPro: IPR003156 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF02272 DHHA1; PF01411 tRNA-synt_2c; PF07973 tRNA_SAD [H]
EC number: =6.1.1.7 [H]
Molecular weight: Translated: 95418; Mature: 95418
Theoretical pI: Translated: 5.81; Mature: 5.81
Prosite motif: PS00087 SOD_CU_ZN_1 ; PS50860 AA_TRNA_LIGASE_II_ALA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYSRA CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCEEEEHEEECCCCCCCHHH TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKVYQLP CCCHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC AEKLWVTVYAEDDEAYDIWAKEVGVPTERIVRIGDNKGSRYASDNFWQMADTGPCGPCSE CCCEEEEEEECCCCCHHHHHHHHCCCHHHEEEECCCCCCCCCCCCCEEECCCCCCCCHHH IFFDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEQGNMTPLPKPCVDTGMGLERI HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCHHHH AAVLQHVHSNYEIDLFQALIKAAARETHIDNLNQNSLKVIADHIRACSFLIVDGVIPGNE HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEECCCCCCC GRGYVLRRIVRRAIRHGYKLGQKTPFFHKLVADLVAQMGEAYPELADAQGRVTEVLKAEE CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHH ERFFETIENGMSILDAALADLKLKGGKTLDGELAFKLHDTFGFPLDLTQDVCREQEIAVD HHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHH EAAFDAAMNRQREQARAAGKFKMAAGLEYSGDKTVFHGYEKLELPQAKIIALYVDGAAVD HHHHHHHHHHHHHHHHHCCCEEHHCCCCCCCCCCEECCHHHHCCCCEEEEEEEECCCEEC AMQPGQTGVIVLDNTPFYAESGGQAGDQGVLKAGNAVFAVADTTKIQADVFGHQGTLEGG CCCCCCCCEEEECCCCCEECCCCCCCCCCHHCCCCEEEEEECCCEEEHHHCCCCCCCCCC ALKVGDTVQPQVDALRRARTVRNHSATHLMHKALREVLGTHVQQKGSLVDADKTRFDFSH CEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEECCCC NAPMTDEQIRRVEDIVNAEILRNEDTHAEIMPFDDAVKSGAMALFGEKYADDVRVLSIGT CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHCCCHHHHHHHHCCCEEEEEECC SKELCGGTHVHRTGDIGLFKIVVEGGVAAGIRRVEAITGDNALHYLQKLDAKLNEAAAAL CHHHCCCCCEEECCCCEEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH KAQPSELVPRIGQVQEQVRALEKELERLKSKLASSQGDELAEQAVDVKGLKVLAAQLEGA HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHCCC DVKTLRETMDKLKDKLQSAAIVLAAVADGKVSLIAGVTADATGKVKAGELVNFVAQQVGG HHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCC KGGGRPDMAQAGGTEPGKLPQALSGVVEWVSAKV CCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MKVSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYSRA CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCEEEEHEEECCCCCCCHHH TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKVYQLP CCCHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC AEKLWVTVYAEDDEAYDIWAKEVGVPTERIVRIGDNKGSRYASDNFWQMADTGPCGPCSE CCCEEEEEEECCCCCHHHHHHHHCCCHHHEEEECCCCCCCCCCCCCEEECCCCCCCCHHH IFFDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEQGNMTPLPKPCVDTGMGLERI HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCHHHH AAVLQHVHSNYEIDLFQALIKAAARETHIDNLNQNSLKVIADHIRACSFLIVDGVIPGNE HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEECCCCCCC GRGYVLRRIVRRAIRHGYKLGQKTPFFHKLVADLVAQMGEAYPELADAQGRVTEVLKAEE CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHH ERFFETIENGMSILDAALADLKLKGGKTLDGELAFKLHDTFGFPLDLTQDVCREQEIAVD HHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHH EAAFDAAMNRQREQARAAGKFKMAAGLEYSGDKTVFHGYEKLELPQAKIIALYVDGAAVD HHHHHHHHHHHHHHHHHCCCEEHHCCCCCCCCCCEECCHHHHCCCCEEEEEEEECCCEEC AMQPGQTGVIVLDNTPFYAESGGQAGDQGVLKAGNAVFAVADTTKIQADVFGHQGTLEGG CCCCCCCCEEEECCCCCEECCCCCCCCCCHHCCCCEEEEEECCCEEEHHHCCCCCCCCCC ALKVGDTVQPQVDALRRARTVRNHSATHLMHKALREVLGTHVQQKGSLVDADKTRFDFSH CEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEECCCC NAPMTDEQIRRVEDIVNAEILRNEDTHAEIMPFDDAVKSGAMALFGEKYADDVRVLSIGT CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHCCCHHHHHHHHCCCEEEEEECC SKELCGGTHVHRTGDIGLFKIVVEGGVAAGIRRVEAITGDNALHYLQKLDAKLNEAAAAL CHHHCCCCCEEECCCCEEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH KAQPSELVPRIGQVQEQVRALEKELERLKSKLASSQGDELAEQAVDVKGLKVLAAQLEGA HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHCCC DVKTLRETMDKLKDKLQSAAIVLAAVADGKVSLIAGVTADATGKVKAGELVNFVAQQVGG HHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCC KGGGRPDMAQAGGTEPGKLPQALSGVVEWVSAKV CCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA