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The map label for this gene is soxR [H]

Identifier: 73540546

GI number: 73540546

Start: 912590

End: 913474

Strand: Direct

Name: soxR [H]

Synonym: Reut_A0843

Alternate gene names: 73540546

Gene position: 912590-913474 (Clockwise)

Preceding gene: 73540537

Following gene: 73540549

Centisome position: 23.97

GC content: 68.14

Gene sequence:

>885_bases
ATGAGCACAATCCGATTCTTACGAACCCTTGTCGCCGTGGCCGAGCACGGATCGTTTGCGGCGGCCGCCGGCCACGTGGC
GCTGACGCAGGCAGCGGTGAGCCTGCAGATGCGTTCGCTCGAAACCGAACTGCGCCGCGAATTGTTCGATCGCAACGGCC
GTGTCGCGGTGCTGAACGCCGATGGCCGGGAGTTGCTGCCGCAGGCGCGCCGTCTGCTGGCGTTGTATGACGAAATGCGC
CTGCCTGCCGCGCAGCCTGAAGCGATGGCGGGCGCTGTCGCCGTGGGTGCGGTGGTGTCTGTCATGGGCGGCCTGTCACA
CGTCGTGGCCCGCATGAAGCGCGCGTATCCCGCATTGGAGGTGCGGCTGGTCGGCGCAAAGTCGATCGAACTCGCGGCGA
TGGTGGAGTCGGGCGACCTAGATGCCGCCATCCTGGTCGAGGGCACCACACGCTTGCCAGGCACGCTGCGCTGGACGACC
CTCTACCAGGAACCCCTGGTGGCCATCGCGGCCCAGGGCAGTGCCGGGCAGGACGTCCGCGAAGCGCTGGCGTGCAATCC
CTACCTGCGCTTCGATCGCAGCCAGCGTACGGGCGTGCTGGTGGAGCGCGCGCTGCGGCGCGCGCATCTGCGTGTCAACG
AGTTCCTGGAGCTGAATTCGATTGAGGCGCTCGTCGAGCTCGTGCGGCAGGAGGTCGGCGTGACCGTGGTGCCATTGCTG
CCACGCGCGCGCTGGCGCGATGATGCGGCGTTGCGCATCCTGCCGTTGCACGTCAATGGCGAGCCGGTGATGCGGACCAT
CGGCATGCTCGAGCGGCGCGATCACGGCAGGGGCCATGTGACCGGCGCCATCCGGACGGCCTGCGCGGAGTTGTTTGGCG
GCTGA

Upstream 100 bases:

>100_bases
AAAGCTAATATTTCTTTTCCTTGACATAAGTTTTTCTTGTGGATCGCGCGGCTTTTCGTCAGCGCGTTGCAAAGCCATTC
ACGCGTCGACCGGTGTCCCA

Downstream 100 bases:

>100_bases
GCGTCCATGCTCGGCAACGACGGGGCAAGAAAGAAAAAAGGGGCGTCTTGCGACGCCCCCAGTCTTGCTTTCGTTGCCGG
CCAGCGGCCGGCGGTCTTGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MSTIRFLRTLVAVAEHGSFAAAAGHVALTQAAVSLQMRSLETELRRELFDRNGRVAVLNADGRELLPQARRLLALYDEMR
LPAAQPEAMAGAVAVGAVVSVMGGLSHVVARMKRAYPALEVRLVGAKSIELAAMVESGDLDAAILVEGTTRLPGTLRWTT
LYQEPLVAIAAQGSAGQDVREALACNPYLRFDRSQRTGVLVERALRRAHLRVNEFLELNSIEALVELVRQEVGVTVVPLL
PRARWRDDAALRILPLHVNGEPVMRTIGMLERRDHGRGHVTGAIRTACAELFGG

Sequences:

>Translated_294_residues
MSTIRFLRTLVAVAEHGSFAAAAGHVALTQAAVSLQMRSLETELRRELFDRNGRVAVLNADGRELLPQARRLLALYDEMR
LPAAQPEAMAGAVAVGAVVSVMGGLSHVVARMKRAYPALEVRLVGAKSIELAAMVESGDLDAAILVEGTTRLPGTLRWTT
LYQEPLVAIAAQGSAGQDVREALACNPYLRFDRSQRTGVLVERALRRAHLRVNEFLELNSIEALVELVRQEVGVTVVPLL
PRARWRDDAALRILPLHVNGEPVMRTIGMLERRDHGRGHVTGAIRTACAELFGG
>Mature_293_residues
STIRFLRTLVAVAEHGSFAAAAGHVALTQAAVSLQMRSLETELRRELFDRNGRVAVLNADGRELLPQARRLLALYDEMRL
PAAQPEAMAGAVAVGAVVSVMGGLSHVVARMKRAYPALEVRLVGAKSIELAAMVESGDLDAAILVEGTTRLPGTLRWTTL
YQEPLVAIAAQGSAGQDVREALACNPYLRFDRSQRTGVLVERALRRAHLRVNEFLELNSIEALVELVRQEVGVTVVPLLP
RARWRDDAALRILPLHVNGEPVMRTIGMLERRDHGRGHVTGAIRTACAELFGG

Specific function: Transcriptional repressor of soxA gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=290, Percent_Identity=30.3448275862069, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI145693105, Length=277, Percent_Identity=24.9097472924188, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787879, Length=247, Percent_Identity=28.3400809716599, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788626, Length=163, Percent_Identity=34.3558282208589, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788481, Length=292, Percent_Identity=29.1095890410959, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082132, Length=265, Percent_Identity=24.9056603773585, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31985; Mature: 31853

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTIRFLRTLVAVAEHGSFAAAAGHVALTQAAVSLQMRSLETELRRELFDRNGRVAVLNA
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
DGRELLPQARRLLALYDEMRLPAAQPEAMAGAVAVGAVVSVMGGLSHVVARMKRAYPALE
CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
VRLVGAKSIELAAMVESGDLDAAILVEGTTRLPGTLRWTTLYQEPLVAIAAQGSAGQDVR
EEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEHHCCCEEEEECCCCCHHHH
EALACNPYLRFDRSQRTGVLVERALRRAHLRVNEFLELNSIEALVELVRQEVGVTVVPLL
HHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECC
PRARWRDDAALRILPLHVNGEPVMRTIGMLERRDHGRGHVTGAIRTACAELFGG
CCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
STIRFLRTLVAVAEHGSFAAAAGHVALTQAAVSLQMRSLETELRRELFDRNGRVAVLNA
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
DGRELLPQARRLLALYDEMRLPAAQPEAMAGAVAVGAVVSVMGGLSHVVARMKRAYPALE
CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
VRLVGAKSIELAAMVESGDLDAAILVEGTTRLPGTLRWTTLYQEPLVAIAAQGSAGQDVR
EEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEHHCCCEEEEECCCCCHHHH
EALACNPYLRFDRSQRTGVLVERALRRAHLRVNEFLELNSIEALVELVRQEVGVTVVPLL
HHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECC
PRARWRDDAALRILPLHVNGEPVMRTIGMLERRDHGRGHVTGAIRTACAELFGG
CCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA