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The map label for this gene is ybbN [H]

Identifier: 73540525

GI number: 73540525

Start: 891877

End: 892809

Strand: Reverse

Name: ybbN [H]

Synonym: Reut_A0822

Alternate gene names: 73540525

Gene position: 892809-891877 (Counterclockwise)

Preceding gene: 73540527

Following gene: 73540524

Centisome position: 23.45

GC content: 65.38

Gene sequence:

>933_bases
ATGAAGCCGCCAAGGTTGCAATCGGCGCCTTTGCCCTCACAATCGTTCTATTCCAGAACTCGATGCCTGCCAGACAGGCT
TGCCGCCATGAGCGATGTCACCCTGCAGAATTTCGAACCGGAAGTGATCGAGGCCTCGCGCCAAGCACCGGTGCTCGTCG
ATTTCTGGGCGCCGTGGTGCGGTCCCTGTCGCACGCTGGGCCCGATGCTGGAAAAGCTGGAGGCAGAAGCGAATGGCAAG
TGGAAGCTGACCAAGGTGAACGTCGATGAGAACCCGGAGCTGGCGGCCCACTTCGGCGTGCGCAGCATTCCCCACGTGGT
GGCGTTCGCCGACGGGGAGGCGGTGGACCAGTTCATCGGCGTACTGCCGGAATCGGGCCTGCGCGAATTCCTGTCGCGGC
TGACGCCGAACCCCGCGCAACTGGCGCTGCAGGACGCACAGTCATTGGCCGCGGCTGGGGACCGCCAGGCTGCCGGCGAT
GCGTTTCAGTCGTTGCTGGCGCTGGATCCCGGTTCCGACGCCGCGCGTCTTGCGTACATCAGCTTCCTGCTGGACGGCAA
TGCGCTGGCCGAGGCCGAAGCGGAATTCGGCAGACTGTCCCCGCAAGCCGCGCAGGAAGACGCCTATGCCGCGCTGCGCA
CGCGACTGGAAGCAATGAAGGGCGTGAGTGACCTGCCGGACGAGCAAACCCTGACGAGCCGCATCGCGGCCGACCCGCGT
GACCTGCCGGCCCGGCTTGACCTGGCCCGCCTGCTGATCGCGCGCCAGCAGTACGAACCCGCGCTCGAACAGTTGCTGGC
GATCGTGCGCATGGACCGCGGCTTTGAGGACGATGTTGGCCGCAAGACCATGATTTCGGTGTTCGATATGCTGGGCGACC
ACCCTGACGTGGTGTCGCGCTGGCGCCGTCAGCTCAGCACCTCGCTCAACTGA

Upstream 100 bases:

>100_bases
CTGTGTAAGGGTGTCAATCACTATAACCGAACGATCGTTCTATTTTCAATCGGTGACTTTCCCGAATCGTGCAATGGAAT
AGTGCGCCAAATGGGGGGCA

Downstream 100 bases:

>100_bases
CGCACGGCGGATGCGCACAGGCCATGGCGCGTTAAACTGGCGGGCCTGCTTCCAGCATCCGCCTGATATTCCCGCCATGA
CCGCATCCGTGCGCCTGATC

Product: thioredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MKPPRLQSAPLPSQSFYSRTRCLPDRLAAMSDVTLQNFEPEVIEASRQAPVLVDFWAPWCGPCRTLGPMLEKLEAEANGK
WKLTKVNVDENPELAAHFGVRSIPHVVAFADGEAVDQFIGVLPESGLREFLSRLTPNPAQLALQDAQSLAAAGDRQAAGD
AFQSLLALDPGSDAARLAYISFLLDGNALAEAEAEFGRLSPQAAQEDAYAALRTRLEAMKGVSDLPDEQTLTSRIAADPR
DLPARLDLARLLIARQQYEPALEQLLAIVRMDRGFEDDVGRKTMISVFDMLGDHPDVVSRWRRQLSTSLN

Sequences:

>Translated_310_residues
MKPPRLQSAPLPSQSFYSRTRCLPDRLAAMSDVTLQNFEPEVIEASRQAPVLVDFWAPWCGPCRTLGPMLEKLEAEANGK
WKLTKVNVDENPELAAHFGVRSIPHVVAFADGEAVDQFIGVLPESGLREFLSRLTPNPAQLALQDAQSLAAAGDRQAAGD
AFQSLLALDPGSDAARLAYISFLLDGNALAEAEAEFGRLSPQAAQEDAYAALRTRLEAMKGVSDLPDEQTLTSRIAADPR
DLPARLDLARLLIARQQYEPALEQLLAIVRMDRGFEDDVGRKTMISVFDMLGDHPDVVSRWRRQLSTSLN
>Mature_310_residues
MKPPRLQSAPLPSQSFYSRTRCLPDRLAAMSDVTLQNFEPEVIEASRQAPVLVDFWAPWCGPCRTLGPMLEKLEAEANGK
WKLTKVNVDENPELAAHFGVRSIPHVVAFADGEAVDQFIGVLPESGLREFLSRLTPNPAQLALQDAQSLAAAGDRQAAGD
AFQSLLALDPGSDAARLAYISFLLDGNALAEAEAEFGRLSPQAAQEDAYAALRTRLEAMKGVSDLPDEQTLTSRIAADPR
DLPARLDLARLLIARQQYEPALEQLLAIVRMDRGFEDDVGRKTMISVFDMLGDHPDVVSRWRRQLSTSLN

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=135, Percent_Identity=36.2962962962963, Blast_Score=96, Evalue=3e-20,
Organism=Escherichia coli, GI87081747, Length=265, Percent_Identity=32.0754716981132, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1788936, Length=104, Percent_Identity=39.4230769230769, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87082331, Length=109, Percent_Identity=36.697247706422, Blast_Score=94, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI212646193, Length=105, Percent_Identity=41.9047619047619, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI28573567, Length=105, Percent_Identity=39.0476190476191, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24664269, Length=83, Percent_Identity=37.3493975903614, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI21358065, Length=97, Percent_Identity=36.0824742268041, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24639826, Length=70, Percent_Identity=37.1428571428571, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24639068, Length=120, Percent_Identity=32.5, Blast_Score=69, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 34033; Mature: 34033

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPPRLQSAPLPSQSFYSRTRCLPDRLAAMSDVTLQNFEPEVIEASRQAPVLVDFWAPWC
CCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEECCCCC
GPCRTLGPMLEKLEAEANGKWKLTKVNVDENPELAAHFGVRSIPHVVAFADGEAVDQFIG
CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCHHHCCCEEEECCCHHHHHHHH
VLPESGLREFLSRLTPNPAQLALQDAQSLAAAGDRQAAGDAFQSLLALDPGSDAARLAYI
HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
SFLLDGNALAEAEAEFGRLSPQAAQEDAYAALRTRLEAMKGVSDLPDEQTLTSRIAADPR
HHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
DLPARLDLARLLIARQQYEPALEQLLAIVRMDRGFEDDVGRKTMISVFDMLGDHPDVVSR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
WRRQLSTSLN
HHHHHHHCCC
>Mature Secondary Structure
MKPPRLQSAPLPSQSFYSRTRCLPDRLAAMSDVTLQNFEPEVIEASRQAPVLVDFWAPWC
CCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEECCCCC
GPCRTLGPMLEKLEAEANGKWKLTKVNVDENPELAAHFGVRSIPHVVAFADGEAVDQFIG
CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCHHHCCCEEEECCCHHHHHHHH
VLPESGLREFLSRLTPNPAQLALQDAQSLAAAGDRQAAGDAFQSLLALDPGSDAARLAYI
HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
SFLLDGNALAEAEAEFGRLSPQAAQEDAYAALRTRLEAMKGVSDLPDEQTLTSRIAADPR
HHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
DLPARLDLARLLIARQQYEPALEQLLAIVRMDRGFEDDVGRKTMISVFDMLGDHPDVVSR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
WRRQLSTSLN
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]