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The map label for this gene is yfdE [H]

Identifier: 73540226

GI number: 73540226

Start: 566045

End: 567106

Strand: Direct

Name: yfdE [H]

Synonym: Reut_A0520

Alternate gene names: 73540226

Gene position: 566045-567106 (Clockwise)

Preceding gene: 73540224

Following gene: 73540227

Centisome position: 14.87

GC content: 69.87

Gene sequence:

>1062_bases
ATGAGCGAGCGCGGCAACCTCTTGCCCCTGCGTGGCATCAAGGTAGTGGAATTCGAAGGTATCGGCCCGGGCCCGCTGTG
CGGCGCCATGCTCGCTGGCCTTGGTGCGGAGGTCACGCTGGTGACGCGCCCGGTTGCCCCCGATGCGCGCCGCATCCTGC
GCGGCCAGGATGTGCCGGCCGAGATGGAACTCGAACACGGCAAGGCCGTGGTGCAGCTCAACCTGAAGTCCGCTGAAGGC
GTCGCCGCCGCGCTGGACCTGGTGGCGGGCGCCGACGCGCTGATCGAGGGGCTGCGCCCCGGCGCAATGGAGCGCCTGGG
CCTGGGCCCGGCCGAATGCCATGCGCGCAACCCGCGGCTCGTGTACGGCCGCATGACCGGCTGGGGCCAGACCGGCCCGC
TCGCGCAGAGCGCCGGGCATGACCTCAACTACATCGCGCTGACCGGCCTGCTGTCGATGGCCGCGCGCGACGACGCGCTG
CCGATGGTGCCACCCACTGTGGTCGGTGATGCCACCGGCGCGCTTGGCCTGGCGTTCGGCATCACCAGCGCCATTCTGAA
CGCGCGCTCGAGCGGGCAGGGCTGCGTGGTCGATGCTGCCATCACCGATATCGTCGCCATGCTGGGCTCGCTGGTGCAGG
TGTCGCGTGCGGCCGGAACGCTCGGCGGGCCGCAGCCCAGCGCATTCCATGACTCGCCGTTCTACGACGTCTTTGCCTGT
TCCGATGGCCGCGCGATCACGCTCGGCGCGCTCGAGCCGCAGTTCTATCGTGAACTGCTCGAGCGGCTCGAACTGACCGA
CATCGATCCGGCCGCGCAGTACGACCGCGCCCAATGGCCGGCGGTGAAGGCGCGCATCACGGCCCTCATTGCTTCGAAGC
CCAGCACGCACTGGGAATCGCTGCTCGGCGGCACCGATGTCTGCTTTGCCCGCGTCCTGACACTGGACGAGGCCGCACGC
CATCCGCACAACCAGGCGCGCGGCACCTACCGCCTGTACCAGCAGGGGGATCGCGAAGTAGCGCGCTCCACACCGGCGCC
GCGCTTCACTGCGGCCAAGTAA

Upstream 100 bases:

>100_bases
CCGGCTTGGGCCCGCGACATGGCGCCCGGCCTTTTCATCCCAGAACACAGGGCAATCGCGCCAGGCCTGGCCGCCGCGAT
GCCTGGACGGAGACAGCAAC

Downstream 100 bases:

>100_bases
GCCAGACTGGCGTCGCGCCGGCAGGCGCGGGCAGACCTTCGGATACCATGCGGCATCCATCATCCGGAGATCTGCCATGA
CCACGCCAGTCGATACATCC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MSERGNLLPLRGIKVVEFEGIGPGPLCGAMLAGLGAEVTLVTRPVAPDARRILRGQDVPAEMELEHGKAVVQLNLKSAEG
VAAALDLVAGADALIEGLRPGAMERLGLGPAECHARNPRLVYGRMTGWGQTGPLAQSAGHDLNYIALTGLLSMAARDDAL
PMVPPTVVGDATGALGLAFGITSAILNARSSGQGCVVDAAITDIVAMLGSLVQVSRAAGTLGGPQPSAFHDSPFYDVFAC
SDGRAITLGALEPQFYRELLERLELTDIDPAAQYDRAQWPAVKARITALIASKPSTHWESLLGGTDVCFARVLTLDEAAR
HPHNQARGTYRLYQQGDREVARSTPAPRFTAAK

Sequences:

>Translated_353_residues
MSERGNLLPLRGIKVVEFEGIGPGPLCGAMLAGLGAEVTLVTRPVAPDARRILRGQDVPAEMELEHGKAVVQLNLKSAEG
VAAALDLVAGADALIEGLRPGAMERLGLGPAECHARNPRLVYGRMTGWGQTGPLAQSAGHDLNYIALTGLLSMAARDDAL
PMVPPTVVGDATGALGLAFGITSAILNARSSGQGCVVDAAITDIVAMLGSLVQVSRAAGTLGGPQPSAFHDSPFYDVFAC
SDGRAITLGALEPQFYRELLERLELTDIDPAAQYDRAQWPAVKARITALIASKPSTHWESLLGGTDVCFARVLTLDEAAR
HPHNQARGTYRLYQQGDREVARSTPAPRFTAAK
>Mature_352_residues
SERGNLLPLRGIKVVEFEGIGPGPLCGAMLAGLGAEVTLVTRPVAPDARRILRGQDVPAEMELEHGKAVVQLNLKSAEGV
AAALDLVAGADALIEGLRPGAMERLGLGPAECHARNPRLVYGRMTGWGQTGPLAQSAGHDLNYIALTGLLSMAARDDALP
MVPPTVVGDATGALGLAFGITSAILNARSSGQGCVVDAAITDIVAMLGSLVQVSRAAGTLGGPQPSAFHDSPFYDVFACS
DGRAITLGALEPQFYRELLERLELTDIDPAAQYDRAQWPAVKARITALIASKPSTHWESLLGGTDVCFARVLTLDEAARH
PHNQARGTYRLYQQGDREVARSTPAPRFTAAK

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI266456254, Length=334, Percent_Identity=35.6287425149701, Blast_Score=211, Evalue=6e-55,
Organism=Homo sapiens, GI42794625, Length=334, Percent_Identity=35.6287425149701, Blast_Score=211, Evalue=6e-55,
Organism=Homo sapiens, GI266458393, Length=298, Percent_Identity=34.8993288590604, Blast_Score=163, Evalue=2e-40,
Organism=Homo sapiens, GI266458397, Length=257, Percent_Identity=37.3540856031128, Blast_Score=162, Evalue=6e-40,
Organism=Homo sapiens, GI300863124, Length=341, Percent_Identity=24.633431085044, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI300863128, Length=336, Percent_Identity=24.702380952381, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI42822893, Length=142, Percent_Identity=42.2535211267606, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI266458395, Length=143, Percent_Identity=41.958041958042, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI300863126, Length=157, Percent_Identity=32.484076433121, Blast_Score=92, Evalue=6e-19,
Organism=Escherichia coli, GI87082093, Length=334, Percent_Identity=29.3413173652695, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1788717, Length=205, Percent_Identity=31.7073170731707, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1786222, Length=358, Percent_Identity=25.4189944134078, Blast_Score=74, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI115535051, Length=345, Percent_Identity=32.1739130434783, Blast_Score=184, Evalue=6e-47,
Organism=Caenorhabditis elegans, GI32564160, Length=325, Percent_Identity=31.3846153846154, Blast_Score=176, Evalue=1e-44,
Organism=Drosophila melanogaster, GI24585488, Length=344, Percent_Identity=38.6627906976744, Blast_Score=221, Evalue=6e-58,
Organism=Drosophila melanogaster, GI24648431, Length=367, Percent_Identity=26.7029972752044, Blast_Score=96, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 37128; Mature: 36997

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERGNLLPLRGIKVVEFEGIGPGPLCGAMLAGLGAEVTLVTRPVAPDARRILRGQDVPA
CCCCCCEEEECCEEEEEECCCCCCHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCCC
EMELEHGKAVVQLNLKSAEGVAAALDLVAGADALIEGLRPGAMERLGLGPAECHARNPRL
CEECCCCCEEEEEECCCCCHHHHHHHHHHCHHHHHHCCCCCHHHHHCCCHHHHCCCCCEE
VYGRMTGWGQTGPLAQSAGHDLNYIALTGLLSMAARDDALPMVPPTVVGDATGALGLAFG
EEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
ITSAILNARSSGQGCVVDAAITDIVAMLGSLVQVSRAAGTLGGPQPSAFHDSPFYDVFAC
HHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE
SDGRAITLGALEPQFYRELLERLELTDIDPAAQYDRAQWPAVKARITALIASKPSTHWES
CCCCEEEEECCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCHHHHH
LLGGTDVCFARVLTLDEAARHPHNQARGTYRLYQQGDREVARSTPAPRFTAAK
HHCCHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHCCCHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SERGNLLPLRGIKVVEFEGIGPGPLCGAMLAGLGAEVTLVTRPVAPDARRILRGQDVPA
CCCCCEEEECCEEEEEECCCCCCHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCCC
EMELEHGKAVVQLNLKSAEGVAAALDLVAGADALIEGLRPGAMERLGLGPAECHARNPRL
CEECCCCCEEEEEECCCCCHHHHHHHHHHCHHHHHHCCCCCHHHHHCCCHHHHCCCCCEE
VYGRMTGWGQTGPLAQSAGHDLNYIALTGLLSMAARDDALPMVPPTVVGDATGALGLAFG
EEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
ITSAILNARSSGQGCVVDAAITDIVAMLGSLVQVSRAAGTLGGPQPSAFHDSPFYDVFAC
HHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE
SDGRAITLGALEPQFYRELLERLELTDIDPAAQYDRAQWPAVKARITALIASKPSTHWES
CCCCEEEEECCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCHHHHH
LLGGTDVCFARVLTLDEAARHPHNQARGTYRLYQQGDREVARSTPAPRFTAAK
HHCCHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHCCCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]