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The map label for this gene is yeaM [H]

Identifier: 73539758

GI number: 73539758

Start: 67055

End: 67882

Strand: Reverse

Name: yeaM [H]

Synonym: Reut_A0052

Alternate gene names: 73539758

Gene position: 67882-67055 (Counterclockwise)

Preceding gene: 73539762

Following gene: 73539754

Centisome position: 1.78

GC content: 66.3

Gene sequence:

>828_bases
ATGCCTGCCTCCGGCACTCGGAAGCCTGCGCCACCGGAAGTCCGGGTGCTGGGCGACACGTACACGAATCCGCCACGCTA
TGTGCACTTCGACCGTGGCCCCATGCCGGTCACGGCGATGGCGGCGGACTACCAGCCCGGCGATGTCACCGCCCGGCACC
AACATCCGCACGCTCAGCTGATCCATGCCGTGCATGGTGTGATGGTGGTCAGCACCGCCGAAGGACAGTGGATCGTCCCG
CCCACGCGCGGCATGTGGATGCCCGGCGGCACGATGCACTGGATCCGCATGGTGGGACAGGTGCAGATGCGCACCGCCTA
TGTCCGGCCGGATGCCGCGCCCGACCTGCCGGGGCGCTGCACGGTGCTGGGCATCTCGCCGCTGCTGCGGGAATTGATCC
TGGCGGCGATCGAAGTCCCGCTGCCCTACACAGCCGATTCGCGCGATGGCCGCCTCATGCAGCTGCTGCTGGATGAGGTG
GTGCTGGTGCCTACCCTGCCCCTGCACTTGCCGCATCCGGCGGACGGCGGCCTGCGCCAGATCTGCGATGCCATCGTCGC
AGAACCTGATACGCAGTTGACGCTGGCGGACTGGGGTGAGCGTTTAGGCCTGGATCCCAAAACTATCCAGCGCCGCTTTG
CGCGGGAAACCGGGATGACGTTCGGGCAGTGGCGACAGCAGGCGCGGTTGCTGGCGGCGCTGGAGAGGCTTGCAGCCGGC
AGCAAGGTAGTGGATGTGGCGCTGGATCTCGGATACGAGAGCCCGAGTGCGTTTGCGACGATGTTCAAGAGGCAGTTCGG
CGTACCGCCGAGCGCATTTTTTCGTTAA

Upstream 100 bases:

>100_bases
AACCAGGGGGGCGCTCGCCGGGACGGTGTGAGAGGCGATGCTAACTGGCTGAAGCGCGCCTGTCCTGCGAGAATAGGTAT
GCAACCTTGGAGAAAAGGAC

Downstream 100 bases:

>100_bases
GTTTTCGCTAAGAAGACCGGCCACAACAAAAAAAGGGCGTCGCCGTACGCCAGCGCTCGGTTTGCTTTTCTCTCCCCTTG
ATCGGCGCCTCGCGCTGGGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MPASGTRKPAPPEVRVLGDTYTNPPRYVHFDRGPMPVTAMAADYQPGDVTARHQHPHAQLIHAVHGVMVVSTAEGQWIVP
PTRGMWMPGGTMHWIRMVGQVQMRTAYVRPDAAPDLPGRCTVLGISPLLRELILAAIEVPLPYTADSRDGRLMQLLLDEV
VLVPTLPLHLPHPADGGLRQICDAIVAEPDTQLTLADWGERLGLDPKTIQRRFARETGMTFGQWRQQARLLAALERLAAG
SKVVDVALDLGYESPSAFATMFKRQFGVPPSAFFR

Sequences:

>Translated_275_residues
MPASGTRKPAPPEVRVLGDTYTNPPRYVHFDRGPMPVTAMAADYQPGDVTARHQHPHAQLIHAVHGVMVVSTAEGQWIVP
PTRGMWMPGGTMHWIRMVGQVQMRTAYVRPDAAPDLPGRCTVLGISPLLRELILAAIEVPLPYTADSRDGRLMQLLLDEV
VLVPTLPLHLPHPADGGLRQICDAIVAEPDTQLTLADWGERLGLDPKTIQRRFARETGMTFGQWRQQARLLAALERLAAG
SKVVDVALDLGYESPSAFATMFKRQFGVPPSAFFR
>Mature_274_residues
PASGTRKPAPPEVRVLGDTYTNPPRYVHFDRGPMPVTAMAADYQPGDVTARHQHPHAQLIHAVHGVMVVSTAEGQWIVPP
TRGMWMPGGTMHWIRMVGQVQMRTAYVRPDAAPDLPGRCTVLGISPLLRELILAAIEVPLPYTADSRDGRLMQLLLDEVV
LVPTLPLHLPHPADGGLRQICDAIVAEPDTQLTLADWGERLGLDPKTIQRRFARETGMTFGQWRQQARLLAALERLAAGS
KVVDVALDLGYESPSAFATMFKRQFGVPPSAFFR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=222, Percent_Identity=35.1351351351351, Blast_Score=135, Evalue=2e-33,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 30286; Mature: 30154

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPASGTRKPAPPEVRVLGDTYTNPPRYVHFDRGPMPVTAMAADYQPGDVTARHQHPHAQL
CCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCHHHH
IHAVHGVMVVSTAEGQWIVPPTRGMWMPGGTMHWIRMVGQVQMRTAYVRPDAAPDLPGRC
HHHHHCEEEEEECCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCCCCCE
TVLGISPLLRELILAAIEVPLPYTADSRDGRLMQLLLDEVVLVPTLPLHLPHPADGGLRQ
EEEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
ICDAIVAEPDTQLTLADWGERLGLDPKTIQRRFARETGMTFGQWRQQARLLAALERLAAG
HHHHHHCCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
SKVVDVALDLGYESPSAFATMFKRQFGVPPSAFFR
CCEEEHHHHCCCCCHHHHHHHHHHHHCCCHHHHCC
>Mature Secondary Structure 
PASGTRKPAPPEVRVLGDTYTNPPRYVHFDRGPMPVTAMAADYQPGDVTARHQHPHAQL
CCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCHHHH
IHAVHGVMVVSTAEGQWIVPPTRGMWMPGGTMHWIRMVGQVQMRTAYVRPDAAPDLPGRC
HHHHHCEEEEEECCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCCCCCE
TVLGISPLLRELILAAIEVPLPYTADSRDGRLMQLLLDEVVLVPTLPLHLPHPADGGLRQ
EEEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
ICDAIVAEPDTQLTLADWGERLGLDPKTIQRRFARETGMTFGQWRQQARLLAALERLAAG
HHHHHHCCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
SKVVDVALDLGYESPSAFATMFKRQFGVPPSAFFR
CCEEEHHHHCCCCCHHHHHHHHHHHHCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]